Cla97C02G035890 (gene) Watermelon (97103) v2

Overview
NameCla97C02G035890
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionacanthoscurrin-1-like
LocationCla97Chr02 : 13956418 .. 13957327 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCAAAAGGTTTTGTATTTGTGTGTCTTCTTCTTGTGTCTGCTTTGGTTGTTTCGTGGGCTAAAGAATCCCACACACAGCCTACTCAAGATGCGCAACAAGGTATTTACTAACTTTTTAATTAATTTTGTATACTACATATAAATTGTAATCATAAAATTACTTTTTCTTTCTCGTACATTTTTTATTTTTTATTTTTTTATTGCGGGTGGTATATGCACAAATAATTAGAGCAATACAAATAATACAAATAATTCCGGCAATATTTAGATGCATACTACTTTAATAAATCAAAAGTATTTTAAAAAGATAAGAATCGTATACATTATGGTAAATTATGAATGCACAAAATAGATCCATGCTTAGAATGCTTCTAACTAATAATTCGTGGCAAAAACTTTCATGTTCCTATATTGTATGACGATATGATAGAAATGTTGGTTTTAATACTGATTATCACTTTTTATATGTCCTTTCTACCCTATTTGATATTCTTCGCTACCAGTGAATCTAGCCCATGACGTAGAAGAGGCTAAACATAGACATGGCGGCGGCAGCGGCGGGGGTAGTTATGGAGGAGGCGGCGGAGGGTCTAGTGGAGGAGGATCTAGCGGTGGTGGGTCTGGCAGCGGAGGGTCTGGTGGCGAAGGTTCTGGCGGAGGTGGGCATGGCGGAGGTGGATCTGGTGGTGGTGGCCAAGGCAGTGGAGGATCAGGCGGAGGCGGTCACGGTGGTGGTGGCCAAGGCGGTGGAGGATCTGGCGGAGGCGGTCAAGGAGGCGGAGGGTCTGGCGGAGGAGGTGGATATGGAGGAGGAGGAGGAGGGTACAAATACAGGAAGGATTCAAGTGGCGAACACGAAGGAGGAAAGGACAGCAGTGGAGGACTAGGACGCGGCGGAAAGTGA

mRNA sequence

ATGAAGTCAAAAGGTTTTGTATTTGTGTGTCTTCTTCTTGTGTCTGCTTTGGTTGTTTCGTGGGCTAAAGAATCCCACACACAGCCTACTCAAGATGCGCAACAAGTGAATCTAGCCCATGACGTAGAAGAGGCTAAACATAGACATGGCGGCGGCAGCGGCGGGGGTAGTTATGGAGGAGGCGGCGGAGGGTCTAGTGGAGGAGGATCTAGCGGTGGTGGGTCTGGCAGCGGAGGGTCTGGTGGCGAAGGTTCTGGCGGAGGTGGGCATGGCGGAGGTGGATCTGGTGGTGGTGGCCAAGGCAGTGGAGGATCAGGCGGAGGCGGTCACGGTGGTGGTGGCCAAGGCGGTGGAGGATCTGGCGGAGGCGGTCAAGGAGGCGGAGGGTCTGGCGGAGGAGGTGGATATGGAGGAGGAGGAGGAGGGTACAAATACAGGAAGGATTCAAGTGGCGAACACGAAGGAGGAAAGGACAGCAGTGGAGGACTAGGACGCGGCGGAAAGTGA

Coding sequence (CDS)

ATGAAGTCAAAAGGTTTTGTATTTGTGTGTCTTCTTCTTGTGTCTGCTTTGGTTGTTTCGTGGGCTAAAGAATCCCACACACAGCCTACTCAAGATGCGCAACAAGTGAATCTAGCCCATGACGTAGAAGAGGCTAAACATAGACATGGCGGCGGCAGCGGCGGGGGTAGTTATGGAGGAGGCGGCGGAGGGTCTAGTGGAGGAGGATCTAGCGGTGGTGGGTCTGGCAGCGGAGGGTCTGGTGGCGAAGGTTCTGGCGGAGGTGGGCATGGCGGAGGTGGATCTGGTGGTGGTGGCCAAGGCAGTGGAGGATCAGGCGGAGGCGGTCACGGTGGTGGTGGCCAAGGCGGTGGAGGATCTGGCGGAGGCGGTCAAGGAGGCGGAGGGTCTGGCGGAGGAGGTGGATATGGAGGAGGAGGAGGAGGGTACAAATACAGGAAGGATTCAAGTGGCGAACACGAAGGAGGAAAGGACAGCAGTGGAGGACTAGGACGCGGCGGAAAGTGA

Protein sequence

MKSKGFVFVCLLLVSALVVSWAKESHTQPTQDAQQVNLAHDVEEAKHRHGGGSGGGSYGGGGGGSSGGGSSGGGSGSGGSGGEGSGGGGHGGGGSGGGGQGSGGSGGGGHGGGGQGGGGSGGGGQGGGGSGGGGGYGGGGGGYKYRKDSSGEHEGGKDSSGGLGRGGK
Homology
[Close]
BLAST of Cla97C02G035890 vs. NCBI nr
Match: XP_011650210.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 5.8e-15
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1   MKSKGFVFVCLLLVSALVVSWAKESHTQPTQDAQQVNLAHDVEEAKHRHGGG 53
           MKSKGFVFVCLLLVSALVVSWA ESHT+ TQD QQVNLAHD+EE K+ HGGG
Sbjct: 54  MKSKGFVFVCLLLVSALVVSWAIESHTESTQDEQQVNLAHDLEEPKYTHGGG 105

[Close]
BLAST of Cla97C02G035890 vs. NCBI nr
Match: XP_016901857.1 (PREDICTED: acanthoscurrin-1-like [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0 

Query: 1  MKSKGFVFVCLLLVSALVVSWAKESHTQPTQDAQQVNLAHDVEEAKHRHGGG 53
          MKSKGF+FVCLLLVSAL VSWA ES TQP Q+ QQV  AHDVEEAKH+ G G
Sbjct: 1  MKSKGFLFVCLLLVSALAVSWAVESRTQPIQNDQQV--AHDVEEAKHKGGSG 50

[Close]
BLAST of Cla97C02G035890 vs. NCBI nr
Match: XP_011650209.1 (PREDICTED: glycine-rich protein DOT1-like [Cucumis sativus] >KGN63186.1 hypothetical protein Csa_2G407830 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 5.7e-10
Identity = 40/52 (76.92%), Postives = 41/52 (78.85%), Query Frame = 0 

Query: 1  MKSKGFVFVCLLLVSALVVSWAKESHTQPTQDAQQVNLAHDVEEAKHRHGGG 53
          MKSKGF+F CLLLVSAL VSWA ES TQP Q  QQV  AHDVEEAKHR G G
Sbjct: 1  MKSKGFLFGCLLLVSALAVSWAVESRTQPIQHDQQV--AHDVEEAKHRSGSG 50

[Close]
BLAST of Cla97C02G035890 vs. NCBI nr
Match: XP_022140564.1 (acanthoscurrin-2-like isoform X1 [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 9.4e-05
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 1  MKSKGFVFVCLLLVSALVVSWAKESHTQPTQDAQQVNLAHDVEEAKH 48
          MKSKGF+F+CLLL+SALV+SWA ESHT  T+D ++VN      E KH
Sbjct: 1  MKSKGFLFLCLLLLSALVISWAIESHT--TKDEKEVNYVGHEAEDKH 45

[Close]
BLAST of Cla97C02G035890 vs. NCBI nr
Match: XP_022140565.1 (acanthoscurrin-2-like isoform X2 [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 9.4e-05
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 1  MKSKGFVFVCLLLVSALVVSWAKESHTQPTQDAQQVNLAHDVEEAKH 48
          MKSKGF+F+CLLL+SALV+SWA ESHT  T+D ++VN      E KH
Sbjct: 1  MKSKGFLFLCLLLLSALVISWAIESHT--TKDEKEVNYVGHEAEDKH 45

[Close]
BLAST of Cla97C02G035890 vs. TrEMBL
Match: tr|A0A1S4E0T9|A0A1S4E0T9_CUCME (acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103496044 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 9.9e-11
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0 

Query: 1  MKSKGFVFVCLLLVSALVVSWAKESHTQPTQDAQQVNLAHDVEEAKHRHGGG 53
          MKSKGF+FVCLLLVSAL VSWA ES TQP Q+ QQV  AHDVEEAKH+ G G
Sbjct: 1  MKSKGFLFVCLLLVSALAVSWAVESRTQPIQNDQQV--AHDVEEAKHKGGSG 50

[Close]
BLAST of Cla97C02G035890 vs. TrEMBL
Match: tr|A0A0A0LT28|A0A0A0LT28_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G407830 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.7e-10
Identity = 40/52 (76.92%), Postives = 41/52 (78.85%), Query Frame = 0 

Query: 1  MKSKGFVFVCLLLVSALVVSWAKESHTQPTQDAQQVNLAHDVEEAKHRHGGG 53
          MKSKGF+F CLLLVSAL VSWA ES TQP Q  QQV  AHDVEEAKHR G G
Sbjct: 1  MKSKGFLFGCLLLVSALAVSWAVESRTQPIQHDQQV--AHDVEEAKHRSGSG 50

The following BLAST results are available for this feature:
BLAST of Cla97C02G035890 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011650210.15.8e-1584.62PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis sativus][more]
XP_016901857.11.5e-1076.92PREDICTED: acanthoscurrin-1-like [Cucumis melo][more]
XP_011650209.15.7e-1076.92PREDICTED: glycine-rich protein DOT1-like [Cucumis sativus] >KGN63186.1 hypothet... [more]
XP_022140564.19.4e-0561.70acanthoscurrin-2-like isoform X1 [Momordica charantia][more]
XP_022140565.19.4e-0561.70acanthoscurrin-2-like isoform X2 [Momordica charantia][more]
BLAST of Cla97C02G035890 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E0T9|A0A1S4E0T9_CUCME9.9e-1176.92acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103496044 PE=4 SV=1[more]
tr|A0A0A0LT28|A0A0A0LT28_CUCSA3.7e-1076.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G407830 PE=4 SV=1[more]
BLAST of Cla97C02G035890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C02G035890 vs. TAIR10
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010800GRP
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G035890.1Cla97C02G035890.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010800Glycine rich proteinPFAMPF07172GRPcoord: 1..94
e-value: 8.6E-9
score: 35.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..168

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C02G035890Cla003714Watermelon (97103) v1wmwmbB318
Cla97C02G035890ClCG02G009560Watermelon (Charleston Gray)wcgwmbB138
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G035890Watermelon (97103) v2wmbwmbB091
Cla97C02G035890Silver-seed gourdcarwmbB0363
Cla97C02G035890Silver-seed gourdcarwmbB0845
Cla97C02G035890Cucumber (Gy14) v2cgybwmbB111
Cla97C02G035890Cucumber (Gy14) v1cgywmbB098
Cla97C02G035890Cucurbita maxima (Rimu)cmawmbB631
Cla97C02G035890Cucurbita moschata (Rifu)cmowmbB511
Cla97C02G035890Cucurbita moschata (Rifu)cmowmbB560
Cla97C02G035890Cucurbita moschata (Rifu)cmowmbB604
Cla97C02G035890Wild cucumber (PI 183967)cpiwmbB118
Cla97C02G035890Cucumber (Chinese Long) v3cucwmbB122
Cla97C02G035890Cucumber (Chinese Long) v2cuwmbB116
Cla97C02G035890Bottle gourd (USVL1VR-Ls)lsiwmbB046
Cla97C02G035890Melon (DHL92) v3.6.1medwmbB103
Cla97C02G035890Melon (DHL92) v3.5.1mewmbB111
Cla97C02G035890Watermelon (Charleston Gray)wcgwmbB148
Cla97C02G035890Watermelon (97103) v1wmwmbB333
Cla97C02G035890Wax gourdwgowmbB256
Cla97C02G035890Wax gourdwgowmbB355