Cla97C02G034250 (gene) Watermelon (97103) v2

Overview
NameCla97C02G034250
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionPhotosystem II CP47 reaction center protein
LocationCla97Chr02 : 8406006 .. 8407430 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAGTGTTCACAAGAGCAAGACGGTTCAATGTCTTACAATGTTAAAGCAGCCAGCATTCTTGTCGGAAGGATTTTTTAGGAGGCCCGGACACCTACCGAACATCCCTGAAGGATGGAACAACATGATGAAGAAGCCACAAAGAAAGAAGAGGGAAGGTATGGAGGAAAATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCCTTTCCTGCTAGGATTGGAAATCCTGTATTTTACATATCCATACGAGACAGATGCCACTAAACAAGTAAAGGACAACGGACAACCTGTACGAATATAACCTACATGTCCAATTGAACTATGAGCTAGAGGTCTTTTGACTTTCGTTTGGGCACTAACTGAAGAAGACAAAAGCTCTTTTTTCTGCAACACTGCCTCTGTTTGAGAAGCCCTATCCATTGTGTTTCCTGCTGATCTTATTCAGACCCCAAGTGATTCCCATGCGCATTCATCATAGTTAGAAGCTCCAGCTCCGTATCAAGGTCACGGTCGATATCGTCACTATCATCAATATCGCCACTATCATCAATATCGTCACTATCATCAATAAGAAAACCCTCAGGGCCATGAAATAGGGATTAAGTGGAACAGAATTGACTGGGTGATAGAGTCGTGAAAACACCAGTTTCTTCCATATTTTGGACCTTAGCTCCATGGAACAATATACTACTGCTTTCGTATGTTCTCCGTTCCTTGTGTGGATAAGACTTATGTTATAGAGTATATAACTTCGATCATAGGGATCGATTTCTAGTCGCATAGCTTCATAATAATTCTGTAAAGCTTCCGCATAATTTCCTTCGGATTGAGCCGACATCCGTTACTGTCGTTCGTTATTCCATTCAAAGAATCTCCGTTCCAGAACCGTACGTGAGATTTTCATCTCATATGGCTCCCCCTTTATGTGATGCGCATAATGAGATGAGAATAATACATGCAATAAAAAAAGATTGAAATACTCTCATTTATAGCTCCCTTTATGATTTGAAGCTATGCATGAGTGGATCTCTTCTCTTGATGAGGAAGGATCCCAAGATTGGCTGCTTTGTCCTATTCAAATATGATAACTCAATGGAGTCAGTTATAGTGATCCTGCTACTGTGAAAAAATATGCTAGACGTGCTCAATTGGGTGAAATTTTTGAATTAGATCGTGCTACTTTGAAATCCGATGGGGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACTTTTGGGCATGCTTCGTTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTCTTTGCTGGGATTGACCCAGATTTGGACGCTCAAGTAGAATTTGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAAAGAGTCTAG

mRNA sequence

ATGATCAGTGTTCACAAGAGCAAGACGGTTCAATGTCTTACAATGTTAAAGCAGCCAGCATTCTTGTCGGAAGGATTTTTTAGGAGGCCCGGACACCTACCGAACATCCCTGAAGGATGGAACAACATGATGAAGAAGCCACAAAGAAAGAAGAGGGAAGATCGTGCTACTTTGAAATCCGATGGGGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACTTTTGGGCATGCTTCGTTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTCTTTGCTGGGATTGACCCAGATTTGGACGCTCAAGTAGAATTTGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAAAGAGTCTAG

Coding sequence (CDS)

ATGATCAGTGTTCACAAGAGCAAGACGGTTCAATGTCTTACAATGTTAAAGCAGCCAGCATTCTTGTCGGAAGGATTTTTTAGGAGGCCCGGACACCTACCGAACATCCCTGAAGGATGGAACAACATGATGAAGAAGCCACAAAGAAAGAAGAGGGAAGATCGTGCTACTTTGAAATCCGATGGGGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACTTTTGGGCATGCTTCGTTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTCTTTGCTGGGATTGACCCAGATTTGGACGCTCAAGTAGAATTTGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAAAGAGTCTAG

Protein sequence

MISVHKSKTVQCLTMLKQPAFLSEGFFRRPGHLPNIPEGWNNMMKKPQRKKREDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Homology
[Close]
BLAST of Cla97C02G034250 vs. NCBI nr
Match: ABU85613.1 (photosystem II CP47 chlorophyll apoprotein, partial (chloroplast) [Scaevola aemula])

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 54  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 113
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 492

Query: 114 GAFQKLGDPTTKRV 128
           GAFQKLGDPTTKRV
Sbjct: 493 GAFQKLGDPTTKRV 506

[Close]
BLAST of Cla97C02G034250 vs. NCBI nr
Match: ADM63359.1 (photosystem II cp47 protein, partial (chloroplast) [Scaevola auriculata])

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 54  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 113
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF
Sbjct: 423 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 482

Query: 114 GAFQKLGDPTTKRV 128
           GAFQKLGDPTTKRV
Sbjct: 483 GAFQKLGDPTTKRV 496

[Close]
BLAST of Cla97C02G034250 vs. NCBI nr
Match: AXR94541.1 (photosystem II CP47 chlorophyll apoprotein (chloroplast) [Hodgsonia macrocarpa] >AXR94627.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Hodgsonia macrocarpa] >AXR94711.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Hodgsonia macrocarpa] >AXR94796.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Hodgsonia macrocarpa])

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 54  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 113
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 492

Query: 114 GAFQKLGDPTTKRV 128
           GAFQKLGDPTTKRV
Sbjct: 493 GAFQKLGDPTTKRV 506

[Close]
BLAST of Cla97C02G034250 vs. NCBI nr
Match: YP_009317412.1 (photosystem II 47 kDa protein (chloroplast) [Coccinia grandis] >YP_009326015.1 photosystem II 47 kDa protein (chloroplast) [Citrullus lanatus] >YP_009348057.1 photosystem II 47 kDa protein (plastid) [Citrullus mucosospermus] >YP_009420820.1 photosystem II 47 kDa protein (chloroplast) [Citrullus colocynthis] >YP_009431583.1 photosystem II 47 kDa protein (chloroplast) [Citrullus amarus] >YP_009431668.1 photosystem II 47 kDa protein (chloroplast) [Citrullus rehmii] >YP_009447476.1 photosystem II 47 kDa protein (chloroplast) [Cucurbita maxima] >YP_009447561.1 photosystem II 47 kDa protein (chloroplast) [Cucurbita moschata] >YP_009456172.1 photosystem II 47 kDa protein (chloroplast) [Lagenaria siceraria] >YP_009505106.1 photosystem II 47 kDa protein (chloroplast) [Cucurbita pepo] >AHM88687.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM88919.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM88977.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89036.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89095.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89154.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89213.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89272.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89332.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89391.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89450.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89509.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89569.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89628.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89687.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89746.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89805.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89864.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89923.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89982.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90041.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90100.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90159.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90218.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90277.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90336.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90395.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90454.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90513.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90572.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90631.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90690.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90749.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90808.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90867.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90926.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90985.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM91044.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM91277.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >ALO21734.1 PsbB (plastid) [Cucurbita argyrosperma] >ALO21777.1 PsbB (plastid) [Cucurbita argyrosperma var. palmeri] >ALO21951.1 PsbB (plastid) [Cucurbita cordata] >ALO21984.1 PsbB (plastid) [Cucurbita digitata] >ALO22039.1 PsbB (plastid) [Cucurbita ecuadorensis] >ALO22131.1 PsbB (plastid) [Cucurbita ficifolia] >ALO22240.1 PsbB (plastid) [Cucurbita lundelliana] >ALO22341.1 PsbB (plastid) [Cucurbita maxima subsp. andreana] >ALO22363.1 PsbB (plastid) [Cucurbita moschata] >ALO22460.1 PsbB (plastid) [Cucurbita okeechobeensis] >ALO22533.1 PsbB (plastid) [Cucurbita okeechobeensis subsp. martinezii] >ALO22583.1 PsbB (plastid) [Cucurbita pepo subsp. fraterna] >ALO22664.1 PsbB (plastid) [Cucurbita pepo subsp. ovifera] >ALO22701.1 PsbB (plastid) [Cucurbita pepo var. ozarkana] >ALO22751.1 PsbB (plastid) [Cucurbita pepo subsp. pepo] >ALO22801.1 PsbB (plastid) [Cucurbita pepo var. texana] >ALO22876.1 PsbB (plastid) [Cucurbita pedatifolia] >AOX48727.1 photosystem II 47 kDa protein (chloroplast) [Coccinia grandis] >AOX48812.1 photosystem II 47 kDa protein (chloroplast) [Coccinia grandis] >APD52506.1 photosystem II 47 kDa protein (chloroplast) [Citrullus lanatus] >APW82488.1 photosystem II 47 kDa protein (plastid) [Citrullus lanatus subsp. vulgaris] >APW82573.1 photosystem II 47 kDa protein (plastid) [Citrullus lanatus subsp. vulgaris] >APW82658.1 photosystem II 47 kDa protein (plastid) [Citrullus lanatus subsp. vulgaris] >APW82743.1 photosystem II 47 kDa protein (plastid) [Citrullus mucosospermus] >APW82828.1 photosystem II 47 kDa protein (plastid) [Citrullus mucosospermus] >APW82913.1 photosystem II 47 kDa protein (plastid) [Citrullus lanatus subsp. vulgaris] >APW82998.1 photosystem II 47 kDa protein (plastid) [Citrullus lanatus subsp. vulgaris] >APW83083.1 photosystem II 47 kDa protein (plastid) [Citrullus lanatus subsp. vulgaris] >APW83168.1 photosystem II 47 kDa protein (plastid) [Citrullus lanatus subsp. vulgaris] >APW83253.1 photosystem II 47 kDa protein (plastid) [Citrullus lanatus subsp. vulgaris] >APW83338.1 photosystem II 47 kDa protein (plastid) [Citrullus mucosospermus] >ASP44455.1 photosystem II 47 kDa protein (chloroplast) [Citrullus colocynthis] >ASY96151.1 photosystem II 47 kDa protein (chloroplast) [Citrullus amarus] >ASY96236.1 photosystem II 47 kDa protein (chloroplast) [Citrullus rehmii] >ATY69866.1 photosystem II 47 kDa protein (chloroplast) [Cucurbita maxima] >ATY69951.1 photosystem II 47 kDa protein (chloroplast) [Cucurbita moschata] >AUJ21937.1 photosystem II 47 kDa protein (chloroplast) [Lagenaria siceraria] >AWX90343.1 photosystem II 47 kDa protein (chloroplast) [Cucurbita pepo])

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 54  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 113
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 492

Query: 114 GAFQKLGDPTTKRV 128
           GAFQKLGDPTTKRV
Sbjct: 493 GAFQKLGDPTTKRV 506

[Close]
BLAST of Cla97C02G034250 vs. NCBI nr
Match: AKZ30707.1 (photosystem II 47 kDa protein (chloroplast) [Scaevola tomentosa] >AKZ30841.1 photosystem II 47 kDa protein (chloroplast) [Diaspasis filifolia] >AKZ30968.1 photosystem II 47 kDa protein (chloroplast) [Scaevola phlebopetala])

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 54  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 113
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 492

Query: 114 GAFQKLGDPTTKRV 128
           GAFQKLGDPTTKRV
Sbjct: 493 GAFQKLGDPTTKRV 506

[Close]
BLAST of Cla97C02G034250 vs. TrEMBL
Match: tr|X2F2N4|X2F2N4_LAGSI (Photosystem II CP47 reaction center protein OS=Lagenaria siceraria OX=3668 GN=psbB PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.7e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 54  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 113
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 492

Query: 114 GAFQKLGDPTTKRV 128
           GAFQKLGDPTTKRV
Sbjct: 493 GAFQKLGDPTTKRV 506

[Close]
BLAST of Cla97C02G034250 vs. TrEMBL
Match: tr|A0A286NFP0|A0A286NFP0_CUCME (Photosystem II CP47 reaction center protein OS=Cucumis melo var. flexuosus OX=1120798 GN=psbB PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.7e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 54  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 113
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 492

Query: 114 GAFQKLGDPTTKRV 128
           GAFQKLGDPTTKRV
Sbjct: 493 GAFQKLGDPTTKRV 506

[Close]
BLAST of Cla97C02G034250 vs. TrEMBL
Match: tr|A0A249RXQ2|A0A249RXQ2_CUCME (Photosystem II CP47 reaction center protein OS=Cucumis melo subsp. agrestis OX=217619 GN=psbB PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.7e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 54  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 113
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 492

Query: 114 GAFQKLGDPTTKRV 128
           GAFQKLGDPTTKRV
Sbjct: 493 GAFQKLGDPTTKRV 506

[Close]
BLAST of Cla97C02G034250 vs. TrEMBL
Match: tr|A0A0S2IFN4|A0A0S2IFN4_CUCMO (Photosystem II CP47 reaction center protein OS=Cucurbita moschata OX=3662 GN=psbB PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.7e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 54  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 113
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 492

Query: 114 GAFQKLGDPTTKRV 128
           GAFQKLGDPTTKRV
Sbjct: 493 GAFQKLGDPTTKRV 506

[Close]
BLAST of Cla97C02G034250 vs. TrEMBL
Match: tr|A0A1P8LDA4|A0A1P8LDA4_CITLA (Photosystem II CP47 reaction center protein OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=psbB PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.7e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 54  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 113
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 492

Query: 114 GAFQKLGDPTTKRV 128
           GAFQKLGDPTTKRV
Sbjct: 493 GAFQKLGDPTTKRV 506

[Close]
BLAST of Cla97C02G034250 vs. Swiss-Prot
Match: sp|A4QJE1|PSBB_AETCO (Photosystem II CP47 reaction center protein OS=Aethionema cordifolium OX=434059 GN=psbB PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-37
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 54  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 113
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 492

Query: 114 GAFQKLGDPTTKR 127
           GAFQKLGDPTTKR
Sbjct: 493 GAFQKLGDPTTKR 505

[Close]
BLAST of Cla97C02G034250 vs. Swiss-Prot
Match: sp|A4QJM5|PSBB_AETGR (Photosystem II CP47 reaction center protein OS=Aethionema grandiflorum OX=72657 GN=psbB PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-37
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 54  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 113
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 492

Query: 114 GAFQKLGDPTTKR 127
           GAFQKLGDPTTKR
Sbjct: 493 GAFQKLGDPTTKR 505

[Close]
BLAST of Cla97C02G034250 vs. Swiss-Prot
Match: sp|A4QK44|PSBB_ARAHI (Photosystem II CP47 reaction center protein OS=Arabis hirsuta OX=78191 GN=psbB PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-37
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 54  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 113
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 492

Query: 114 GAFQKLGDPTTKR 127
           GAFQKLGDPTTKR
Sbjct: 493 GAFQKLGDPTTKR 505

[Close]
BLAST of Cla97C02G034250 vs. Swiss-Prot
Match: sp|P56777|PSBB_ARATH (Photosystem II CP47 reaction center protein OS=Arabidopsis thaliana OX=3702 GN=psbB PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-37
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 54  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 113
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 492

Query: 114 GAFQKLGDPTTKR 127
           GAFQKLGDPTTKR
Sbjct: 493 GAFQKLGDPTTKR 505

[Close]
BLAST of Cla97C02G034250 vs. Swiss-Prot
Match: sp|Q7FNS4|PSBB_ATRBE (Photosystem II CP47 reaction center protein OS=Atropa belladonna OX=33113 GN=psbB PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-37
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 54  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 113
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 492

Query: 114 GAFQKLGDPTTKR 127
           GAFQKLGDPTTKR
Sbjct: 493 GAFQKLGDPTTKR 505

[Close]
BLAST of Cla97C02G034250 vs. TAIR10
Match: ATCG00680.1 (photosystem II reaction center protein B)

HSP 1 Score: 157.1 bits (396), Expect = 7.0e-39
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 54  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 113
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 492

Query: 114 GAFQKLGDPTTKR 127
           GAFQKLGDPTTKR
Sbjct: 493 GAFQKLGDPTTKR 505

The following BLAST results are available for this feature:
BLAST of Cla97C02G034250 vs. NCBI nr
Match NameE-valueIdentityDescription
ABU85613.11.3e-35100.00photosystem II CP47 chlorophyll apoprotein, partial (chloroplast) [Scaevola aemu... [more]
ADM63359.11.3e-35100.00photosystem II cp47 protein, partial (chloroplast) [Scaevola auriculata][more]
AXR94541.11.3e-35100.00photosystem II CP47 chlorophyll apoprotein (chloroplast) [Hodgsonia macrocarpa] ... [more]
YP_009317412.11.3e-35100.00photosystem II 47 kDa protein (chloroplast) [Coccinia grandis] >YP_009326015.1 p... [more]
AKZ30707.11.3e-35100.00photosystem II 47 kDa protein (chloroplast) [Scaevola tomentosa] >AKZ30841.1 pho... [more]
BLAST of Cla97C02G034250 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|X2F2N4|X2F2N4_LAGSI8.7e-36100.00Photosystem II CP47 reaction center protein OS=Lagenaria siceraria OX=3668 GN=ps... [more]
tr|A0A286NFP0|A0A286NFP0_CUCME8.7e-36100.00Photosystem II CP47 reaction center protein OS=Cucumis melo var. flexuosus OX=11... [more]
tr|A0A249RXQ2|A0A249RXQ2_CUCME8.7e-36100.00Photosystem II CP47 reaction center protein OS=Cucumis melo subsp. agrestis OX=2... [more]
tr|A0A0S2IFN4|A0A0S2IFN4_CUCMO8.7e-36100.00Photosystem II CP47 reaction center protein OS=Cucurbita moschata OX=3662 GN=psb... [more]
tr|A0A1P8LDA4|A0A1P8LDA4_CITLA8.7e-36100.00Photosystem II CP47 reaction center protein OS=Citrullus lanatus subsp. vulgaris... [more]
BLAST of Cla97C02G034250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|A4QJE1|PSBB_AETCO1.3e-37100.00Photosystem II CP47 reaction center protein OS=Aethionema cordifolium OX=434059 ... [more]
sp|A4QJM5|PSBB_AETGR1.3e-37100.00Photosystem II CP47 reaction center protein OS=Aethionema grandiflorum OX=72657 ... [more]
sp|A4QK44|PSBB_ARAHI1.3e-37100.00Photosystem II CP47 reaction center protein OS=Arabis hirsuta OX=78191 GN=psbB P... [more]
sp|P56777|PSBB_ARATH1.3e-37100.00Photosystem II CP47 reaction center protein OS=Arabidopsis thaliana OX=3702 GN=p... [more]
sp|Q7FNS4|PSBB_ATRBE1.3e-37100.00Photosystem II CP47 reaction center protein OS=Atropa belladonna OX=33113 GN=psb... [more]
BLAST of Cla97C02G034250 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00680.17.0e-39100.00photosystem II reaction center protein B[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
GO:0009522photosystem I
GO:0016021integral component of membrane
GO:0016020membrane
GO:0009521photosystem
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO:0009767photosynthetic electron transport chain
GO:0019684photosynthesis, light reaction
Vocabulary: Molecular Function
TermDefinition
GO:0016168chlorophyll binding
Vocabulary: INTERPRO
TermDefinition
IPR036408PSI_PsaA/B_sf
IPR000932PS_antenna-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0009521 photosystem
cellular_component GO:0009523 photosystem II
cellular_component GO:0009536 plastid
cellular_component GO:0009579 thylakoid
cellular_component GO:0042651 thylakoid membrane
cellular_component GO:0009522 photosystem I
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G034250.1Cla97C02G034250.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 52..121
e-value: 8.3E-30
score: 103.8
IPR000932Photosystem antenna protein-likePANTHERPTHR33180FAMILY NOT NAMEDcoord: 54..126
NoneNo IPR availablePANTHERPTHR33180:SF5PHOTOSYSTEM II CP47 REACTION CENTER PROTEINcoord: 54..126
IPR036408Photosystem I PsaA/PsaB superfamilySUPERFAMILYSSF81558Photosystem I subunits PsaA/PsaBcoord: 53..127

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G034250Watermelon (Charleston Gray)wcgwmbB138
Cla97C02G034250Watermelon (97103) v1wmwmbB317
Cla97C02G034250Watermelon (97103) v1wmwmbB326