Cla97C02G034110 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G034110
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Pathogenesis-related family protein
Location	Cla97Chr02 : 7933268 .. 7933524 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAACCAGAACCCTATCCTACATTGCCCCCATCTTCGCCGAAAGCTACCCAACTACACTGCTGCCCACAATGCAATCCGCGCGAAAGTTAGTGTCCTGTCCCTCCATTAATAACCACTCTGGCTGCTTATGCTCAGAACTATGCCAACACGAAGATCACTACTTGTAAAATGGAGCACTCTAGAGGACCTTATGGCGAGAACCTAACGAAGGGGTACAAAATGATGACAGCAGAGACAACAATGAGTCTCTAA

mRNA sequence

ATGGCTAACCAGAACCCTATCCTACATTGCCCCCATCTTCGCCGAAAGCTACCCAACTACACTGCTGCCCACAATGCAATCCGCGCGAAAAACTATGCCAACACGAAGATCACTACTTGTAAAATGGAGCACTCTAGAGGACCTTATGGCGAGAACCTAACGAAGGGGTACAAAATGATGACAGCAGAGACAACAATGAGTCTCTAA

Coding sequence (CDS)

ATGGCTAACCAGAACCCTATCCTACATTGCCCCCATCTTCGCCGAAAGCTACCCAACTACACTGCTGCCCACAATGCAATCCGCGCGAAAAACTATGCCAACACGAAGATCACTACTTGTAAAATGGAGCACTCTAGAGGACCTTATGGCGAGAACCTAACGAAGGGGTACAAAATGATGACAGCAGAGACAACAATGAGTCTCTAA

Protein sequence

MANQNPILHCPHLRRKLPNYTAAHNAIRAKNYANTKITTCKMEHSRGPYGENLTKGYKMMTAETTMSL

Homology

[Close]

BLAST of Cla97C02G034110 vs. NCBI nr
Match: XP_008455069.1 (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 3.3e-09
Identity = 40/76 (52.63%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 11 PHLRRKLP-NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGEN 69
          P L +  P NY  AHNAIR                 A+NYANTKI TC+MEHS GPYGEN
Sbjct: 24 PILAKSYPKNYVDAHNAIRAEVGVDPLHWNSTLAAYAQNYANTKIATCQMEHSGGPYGEN 83

[Close]

BLAST of Cla97C02G034110 vs. NCBI nr
Match: XP_004137080.2 (PREDICTED: pathogenesis-related protein 1A-like [Cucumis sativus] >KGN43826.1 hypothetical protein Csa_7G070232 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 9.6e-09
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 19  NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGENLTKGYKMMT 69
           NY  AHNA+R                 A+NYANTKI TC+MEHS GPYGENL +G ++MT
Sbjct: 39  NYIDAHNAVRAAVGVEPLHWNSTLADYAQNYANTKIATCQMEHSGGPYGENLAEGNEVMT 98

[Close]

BLAST of Cla97C02G034110 vs. NCBI nr
Match: XP_022927709.1 (pathogenesis-related protein 1A-like [Cucurbita moschata])

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-06
Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 19  NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGENLTKGYKMMT 69
           +Y  AHNAIR                 A+NYA TKI +C+M HS GPYGENL +GY+ MT
Sbjct: 43  DYVDAHNAIRAEVGVEPLQWNETLATYAQNYAETKIASCEMVHSGGPYGENLAEGYEEMT 102

[Close]

BLAST of Cla97C02G034110 vs. NCBI nr
Match: XP_022988978.1 (basic form of pathogenesis-related protein 1-like [Cucurbita maxima])

HSP 1 Score: 59.3 bits (142), Expect = 5.8e-06
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 19 NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGENLTKGYKMMT 69
          ++  AHNAIR                 A+ YA +KITTC+MEHS GPYGENL  GY+ +T
Sbjct: 33 DFVDAHNAIRAEVGVEPLKWNETLATYAQKYAESKITTCEMEHSGGPYGENLAVGYEGIT 92

[Close]

BLAST of Cla97C02G034110 vs. NCBI nr
Match: XP_008455070.1 (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 2.9e-05
Identity = 31/75 (41.33%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 11 PHLRRKLP-NYTAAHNAIRAK-----------------NYANTKITTCKMEHSRGPYGEN 68
          P + +  P  +  AHNAIRAK                 NYA T++ TC+MEHS GPYGEN
Sbjct: 25 PTIAKSSPQEFVDAHNAIRAKYGVGPVTWNKTLASYAENYAKTRVATCEMEHSMGPYGEN 84

[Close]

BLAST of Cla97C02G034110 vs. TrEMBL
Match: tr|A0A1S3C0S3|A0A1S3C0S3_CUCME (basic form of pathogenesis-related protein 1-like OS=Cucumis melo OX=3656 GN=LOC103495334 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-09
Identity = 40/76 (52.63%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 11 PHLRRKLP-NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGEN 69
          P L +  P NY  AHNAIR                 A+NYANTKI TC+MEHS GPYGEN
Sbjct: 24 PILAKSYPKNYVDAHNAIRAEVGVDPLHWNSTLAAYAQNYANTKIATCQMEHSGGPYGEN 83

[Close]

BLAST of Cla97C02G034110 vs. TrEMBL
Match: tr|A0A0A0K7N5|A0A0A0K7N5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070232 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.4e-09
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 19  NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGENLTKGYKMMT 69
           NY  AHNA+R                 A+NYANTKI TC+MEHS GPYGENL +G ++MT
Sbjct: 39  NYIDAHNAVRAAVGVEPLHWNSTLADYAQNYANTKIATCQMEHSGGPYGENLAEGNEVMT 98

[Close]

BLAST of Cla97C02G034110 vs. TrEMBL
Match: tr|A0A1S3C197|A0A1S3C197_CUCME (basic form of pathogenesis-related protein 1-like OS=Cucumis melo OX=3656 GN=LOC103495335 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-05
Identity = 31/75 (41.33%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 11 PHLRRKLP-NYTAAHNAIRAK-----------------NYANTKITTCKMEHSRGPYGEN 68
          P + +  P  +  AHNAIRAK                 NYA T++ TC+MEHS GPYGEN
Sbjct: 25 PTIAKSSPQEFVDAHNAIRAKYGVGPVTWNKTLASYAENYAKTRVATCEMEHSMGPYGEN 84

[Close]

BLAST of Cla97C02G034110 vs. TrEMBL
Match: tr|A0A2P5C2B7|A0A2P5C2B7_PARAD (Cysteine-rich secretory protein, allergen V5/Tpx-1-related OS=Parasponia andersonii OX=3476 GN=PanWU01x14_190720 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-05
Identity = 29/62 (46.77%), Postives = 36/62 (58.06%), Query Frame = 0


Query: 19 NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGENLTKGYKMMT 64
          ++ A HNAIR                 A+NYAN+KI  C+MEHS GPYGENL +GY  M+
Sbjct: 38 DFVATHNAIRAEVGVGPLSWNKTLATYARNYANSKIENCEMEHSGGPYGENLAEGYGHMS 97

[Close]

BLAST of Cla97C02G034110 vs. TrEMBL
Match: tr|A0A2P5AAT5|A0A2P5AAT5_9ROSA (Cysteine-rich secretory protein, allergen V5/Tpx-1-related OS=Trema orientalis OX=63057 GN=TorRG33x02_354600 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.3e-05
Identity = 29/62 (46.77%), Postives = 36/62 (58.06%), Query Frame = 0


Query: 19 NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGENLTKGYKMMT 64
          ++ A HNAIR                 A+NYAN+KI  C+MEHS GPYGENL +GY  M+
Sbjct: 37 DFVATHNAIRAEVGVGPLSWNKTLAAYARNYANSKIGNCEMEHSGGPYGENLAEGYGHMS 96

[Close]

BLAST of Cla97C02G034110 vs. TAIR10
Match: AT2G14580.1 (basic pathogenesis-related protein 1)

HSP 1 Score: 40.4 bits (93), Expect = 5.1e-04
Identity = 18/30 (60.00%), Postives = 21/30 (70.00%), Query Frame = 0


Query: 26 AIRAKNYANTKITTCKMEHSRGPYGENLTK 56
          A  A+NYAN     C++ HSRGPYGENL K
Sbjct: 56 AAYARNYANQLKGDCRLVHSRGPYGENLAK 85

The following BLAST results are available for this feature:

BLAST of Cla97C02G034110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455069.1	3.3e-09	52.63	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo]	[more]
XP_004137080.2	9.6e-09	53.73	PREDICTED: pathogenesis-related protein 1A-like [Cucumis sativus] >KGN43826.1 hy...	[more]
XP_022927709.1	4.5e-06	47.76	pathogenesis-related protein 1A-like [Cucurbita moschata]	[more]
XP_022988978.1	5.8e-06	47.76	basic form of pathogenesis-related protein 1-like [Cucurbita maxima]	[more]
XP_008455070.1	2.9e-05	41.33	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo]	[more]

BLAST of Cla97C02G034110 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0S3\|A0A1S3C0S3_CUCME	2.2e-09	52.63	basic form of pathogenesis-related protein 1-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A0A0K7N5\|A0A0A0K7N5_CUCSA	6.4e-09	53.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070232 PE=3 SV=1	[more]
tr\|A0A1S3C197\|A0A1S3C197_CUCME	1.9e-05	41.33	basic form of pathogenesis-related protein 1-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A2P5C2B7\|A0A2P5C2B7_PARAD	3.3e-05	46.77	Cysteine-rich secretory protein, allergen V5/Tpx-1-related OS=Parasponia anderso...	[more]
tr\|A0A2P5AAT5\|A0A2P5AAT5_9ROSA	4.3e-05	46.77	Cysteine-rich secretory protein, allergen V5/Tpx-1-related OS=Trema orientalis O...	[more]

BLAST of Cla97C02G034110 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G034110 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14580.1	5.1e-04	60.00	basic pathogenesis-related protein 1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR035940	CAP_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005615	extracellular space

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G034110.1	Cla97C02G034110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035940	CAP superfamily	SUPERFAMILY	SSF55797	PR-1-like	coord: 21..65

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G034110	Bhi05G000850	Wax gourd	wgowmbB253

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G034110	Cucumber (Chinese Long) v3	cucwmbB550
Cla97C02G034110	Cucumber (Chinese Long) v2	cuwmbB530
Cla97C02G034110	Bottle gourd (USVL1VR-Ls)	lsiwmbB226
Cla97C02G034110	Bottle gourd (USVL1VR-Ls)	lsiwmbB229
Cla97C02G034110	Melon (DHL92) v3.6.1	medwmbB166
Cla97C02G034110	Melon (DHL92) v3.6.1	medwmbB469
Cla97C02G034110	Melon (DHL92) v3.5.1	mewmbB180
Cla97C02G034110	Melon (DHL92) v3.5.1	mewmbB476
Cla97C02G034110	Watermelon (Charleston Gray)	wcgwmbB044
Cla97C02G034110	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G034110	Watermelon (97103) v1	wmwmbB063
Cla97C02G034110	Watermelon (97103) v1	wmwmbB317
Cla97C02G034110	Watermelon (97103) v1	wmwmbB322
Cla97C02G034110	Wax gourd	wgowmbB033
Cla97C02G034110	Watermelon (97103) v2	wmbwmbB048
Cla97C02G034110	Silver-seed gourd	carwmbB0394
Cla97C02G034110	Silver-seed gourd	carwmbB0477
Cla97C02G034110	Silver-seed gourd	carwmbB0766
Cla97C02G034110	Cucumber (Gy14) v2	cgybwmbB503
Cla97C02G034110	Cucumber (Gy14) v1	cgywmbB395
Cla97C02G034110	Cucurbita maxima (Rimu)	cmawmbB104
Cla97C02G034110	Cucurbita maxima (Rimu)	cmawmbB531
Cla97C02G034110	Cucurbita maxima (Rimu)	cmawmbB744
Cla97C02G034110	Cucurbita moschata (Rifu)	cmowmbB088
Cla97C02G034110	Cucurbita moschata (Rifu)	cmowmbB512
Cla97C02G034110	Cucurbita moschata (Rifu)	cmowmbB717
Cla97C02G034110	Wild cucumber (PI 183967)	cpiwmbB554