Cla97C02G033830 (gene) Watermelon (97103) v2

Overview
NameCla97C02G033830
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Description30S ribosomal protein S2, chloroplastic
LocationCla97Chr02 : 7415934 .. 7417855 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGAAGCAAGAGTTCGTCTTGGTCATGGTACTAGAAAATGGAATCCTAGAATGACATCTTATATCTCTGCAAAACGTATATTCATATTATAAATCTTACTAGAACTGTTCGTTTTTTTTTTTTTTATCAGAAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGCAAACAATTCTTAATTGTTGGTACAAAAAATAAAGTAGTGGATTCAGTAGCTCGTGCTGCAACAAGGGCTCAGTGTCATTATGTTAATAAAAAATGGCTTGGGGGATGTTAACAAATTGATCTACTATAGAAATGAGACTATTGGGATTAGTGCCTTAAATCTCGTGGGTCTCGTAGTTTGTATATTGTAAATGATAGTTTATTTATTTAATAAAATAAGAAGTATTTTATTTCACATTTAGATCGCATTAACTCAATCTAATAAACCAAGATCCAAAGTTATTTAATGTAACTTGAATAGTATGTGGTTGACACACAAGTAGATTGTATTCAAGTAATAACTTAAAAGGTATGCAACATATGGATAAGATTGGGTGTGTTATCCTAATAACATTGTGGATACAACCCACTTTGTAATTGTTACAAGAGTTACAATCGATTTGATCCAAATCCTTCATGTGGAGACATGTGAGTGGGGTATCATGTACAAAGAGTTTGTATAAGATCGGACTTTATAACACCTTTAATTGAAGAGACTAACATTTCATAGGATGATCATAGATAACTCAGTCTCAATCCTGAGTGAGTATGGACTCCTATCTATGAGGACAATCCTTTGATTTGTATGAGAGTGACTCGAGTTGCCGACTTAATATGCCTACCACTTTGAGAATTTATCTGAGTAGGGAGCTGAGAACATAACAATACAAGATGGAGTTGACTCTTTTCCGCATTCAGGGAAAGTAGATAAATTGCTCCATTAAGTACTAACCCCGTGTCTTGAACATGGAGCCCTCCCTCCCATTGGCTCGAGAGGGATTTTTTTATGGTAGGACCATAAACAGTTTGTTCATTAGAAGATCAATGAGACTTAAGGAGAAATAAGTAATTACATGGGTAAAACAGTAATTTTGACCCGGCTGTAATTATGAGCAATTTGTGAAGAATCGACTTATTGATGACTGGTTATATCCATGGACACAAAAATACATCTATAGTGCAAAAAGTGCAACTGTGAGTTTTTAGTGGAGTGACCCATAGTTAATGAATATTGATCTACTACAGAAACGAGACTTCATAAGTTCAAGGACTTGAGAACAGAACAAAAGACGGGCCCCAGGTAGGTGCTTTGTTTGTGAGCTGGAAATTTAAAGATTAGTGATCCCACTGTTTTTAATGTTGGAGTGCTTAAAGGCGTAGCATGTGTTGTCGGAATTTCTTTTCAAGAAAGAACTACGATACGAGTAATTCTATAAGGGGCAAGAATCATGAAATGCTCTTTTTTTTCCAGGACGGGCCCTTGTTGGCTCAGATGCACCAATAACTACTGCCTACTGGAAAAGATTACCTATTAGACGAGTAATTCTATGAGCAAGAATAATGAAATGCTCTTTTTTTCGAGGGTGGGTCCTTATTGGCTCAGTTGCACAAATAACTGGTGTTTGGAAAAGATTACCTATTAGATTAGTGGATTCGATGTAACTCATGACCTCAGACTATCCTAAGGAGTCGGGTCTCCCAATCCAATAAAAGAAATATGGGCAAGACAAAAGAGAAGTATTAGCCCTTCTGGAAAGAGATTCAATAACACTGATCAAAGAGCTAGCAATGACTTTCCTCCCACCTGGAGTGATGGTTAGGCCACGACCAAGAGAACCCTTCAGATACCGTAAGATGGGTTTTACAGCTGTCGGTACCACTTACCTTAACCATTCAGCCATGGATGCTTAGCGAGGATCTTCGTACTTGA

mRNA sequence

ATGATGGAAGCAAGAGTTCGTCTTGGTCATGGTACTAGAAAATGGAATCCTAGAATGACATCTTATATCTCTGCAAAACCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGCAAACAATTCTTAATTGTTGGTACAAAAAATAAAGTAGTGGATTCAGTAGCTCGTGCTGCAACAAGGGCTCAGTGTCATTATAACTACGATACGAGACGGGCCCTTGTTGGCTCAGATGCACCAATAACTACTGCCTACTGGAAAAGATTACCTATTAGACGACTGTCGGTACCACTTACCTTAACCATTCAGCCATGGATGCTTAGCGAGGATCTTCGTACTTGA

Coding sequence (CDS)

ATGATGGAAGCAAGAGTTCGTCTTGGTCATGGTACTAGAAAATGGAATCCTAGAATGACATCTTATATCTCTGCAAAACCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGCAAACAATTCTTAATTGTTGGTACAAAAAATAAAGTAGTGGATTCAGTAGCTCGTGCTGCAACAAGGGCTCAGTGTCATTATAACTACGATACGAGACGGGCCCTTGTTGGCTCAGATGCACCAATAACTACTGCCTACTGGAAAAGATTACCTATTAGACGACTGTCGGTACCACTTACCTTAACCATTCAGCCATGGATGCTTAGCGAGGATCTTCGTACTTGA

Protein sequence

MMEARVRLGHGTRKWNPRMTSYISAKPCDLVFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHYNYDTRRALVGSDAPITTAYWKRLPIRRLSVPLTLTIQPWMLSEDLRT
Homology
[Close]
BLAST of Cla97C02G033830 vs. NCBI nr
Match: AXR94579.1 (ribosomal protein S2 (chloroplast) [Hodgsonia macrocarpa] >AXR94665.1 ribosomal protein S2 (chloroplast) [Hodgsonia macrocarpa] >AXR94748.1 ribosomal protein S2 (chloroplast) [Hodgsonia macrocarpa] >AXR94834.1 ribosomal protein S2 (chloroplast) [Hodgsonia macrocarpa])

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 56/83 (67.47%), Postives = 57/83 (68.67%), Query Frame = 0 

Query: 1  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFL 60
          MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFL
Sbjct: 13 MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61 IVGTKNKVVDSVARAATRAQCHY 66
          IVGTKNK  DSVARAATRA+CHY
Sbjct: 73 IVGTKNKAADSVARAATRARCHY 95

[Close]
BLAST of Cla97C02G033830 vs. NCBI nr
Match: YP_009317375.1 (ribosomal protein S2 (chloroplast) [Coccinia grandis] >YP_009325978.1 ribosomal protein S2 (chloroplast) [Citrullus lanatus] >YP_009348020.1 ribosomal protein S2 (plastid) [Citrullus mucosospermus] >YP_009420783.1 ribosomal protein S2 (chloroplast) [Citrullus colocynthis] >YP_009431546.1 ribosomal protein S2 (chloroplast) [Citrullus amarus] >YP_009431631.1 ribosomal protein S2 (chloroplast) [Citrullus rehmii] >YP_009447439.1 ribosomal protein S2 (chloroplast) [Cucurbita maxima] >YP_009456135.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >YP_009505069.1 ribosomal protein S2 (chloroplast) [Cucurbita pepo] >AHM88702.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM88992.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM89051.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM89110.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM89169.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM89228.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM89287.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM89347.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM89406.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM89465.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM89524.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM89584.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM89643.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM89702.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM89761.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM89820.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM89879.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM89938.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM89997.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM90056.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM90115.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM90174.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM90233.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM90292.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM90351.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM90410.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM90469.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM90528.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM90587.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM90646.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM90705.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM90764.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM90823.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM90882.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM90941.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM91000.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM91059.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AHM91292.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >ALO22031.1 ribosomal protein S2 (plastid) [Cucurbita ecuadorensis] >ALO22147.1 ribosomal protein S2 (plastid) [Cucurbita ficifolia] >ALO22201.1 ribosomal protein S2 (plastid) [Cucurbita foetidissima] >ALO22335.1 ribosomal protein S2 (plastid) [Cucurbita maxima subsp. andreana] >ALO22560.1 ribosomal protein S2 (plastid) [Cucurbita pepo subsp. fraterna] >ALO22610.1 ribosomal protein S2 (plastid) [Cucurbita pepo subsp. ovifera] >ALO22698.1 ribosomal protein S2 (plastid) [Cucurbita pepo var. ozarkana] >ALO22796.1 ribosomal protein S2 (plastid) [Cucurbita pepo subsp. pepo] >ALO22851.1 ribosomal protein S2 (plastid) [Cucurbita pepo var. texana] >ALO22893.1 ribosomal protein S2 (plastid) [Cucurbita pedatifolia] >AOX48748.1 ribosomal protein S2 (chloroplast) [Coccinia grandis] >AOX48833.1 ribosomal protein S2 (chloroplast) [Coccinia grandis] >APD52469.1 ribosomal protein S2 (chloroplast) [Citrullus lanatus] >APW82450.1 ribosomal protein S2 (plastid) [Citrullus lanatus subsp. vulgaris] >APW82535.1 ribosomal protein S2 (plastid) [Citrullus lanatus subsp. vulgaris] >APW82620.1 ribosomal protein S2 (plastid) [Citrullus lanatus subsp. vulgaris] >APW82705.1 ribosomal protein S2 (plastid) [Citrullus mucosospermus] >APW82790.1 ribosomal protein S2 (plastid) [Citrullus mucosospermus] >APW82875.1 ribosomal protein S2 (plastid) [Citrullus lanatus subsp. vulgaris] >APW82960.1 ribosomal protein S2 (plastid) [Citrullus lanatus subsp. vulgaris] >APW83045.1 ribosomal protein S2 (plastid) [Citrullus lanatus subsp. vulgaris] >APW83130.1 ribosomal protein S2 (plastid) [Citrullus lanatus subsp. vulgaris] >APW83215.1 ribosomal protein S2 (plastid) [Citrullus lanatus subsp. vulgaris] >APW83300.1 ribosomal protein S2 (plastid) [Citrullus mucosospermus] >ASP44508.1 ribosomal protein S2 (chloroplast) [Citrullus colocynthis] >ASY96196.1 ribosomal protein S2 (chloroplast) [Citrullus amarus] >ASY96289.1 ribosomal protein S2 (chloroplast) [Citrullus rehmii] >ATY69905.1 ribosomal protein S2 (chloroplast) [Cucurbita maxima] >AUJ21901.1 ribosomal protein S2 (chloroplast) [Lagenaria siceraria] >AWX90383.1 ribosomal protein S2 (chloroplast) [Cucurbita pepo])

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 56/83 (67.47%), Postives = 57/83 (68.67%), Query Frame = 0 

Query: 1  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFL 60
          MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFL
Sbjct: 13 MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61 IVGTKNKVVDSVARAATRAQCHY 66
          IVGTKNK  DSVARAATRA+CHY
Sbjct: 73 IVGTKNKAADSVARAATRARCHY 95

[Close]
BLAST of Cla97C02G033830 vs. NCBI nr
Match: AHM88761.1 (ribosomal protein S2, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 56/83 (67.47%), Postives = 57/83 (68.67%), Query Frame = 0 

Query: 1  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFL 60
          MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFL
Sbjct: 13 MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61 IVGTKNKVVDSVARAATRAQCHY 66
          IVGTKNK  DSVARAATRA+CHY
Sbjct: 73 IVGTKNKAADSVARAATRARCHY 95

[Close]
BLAST of Cla97C02G033830 vs. NCBI nr
Match: AHM88819.1 (ribosomal protein S2, partial (chloroplast) [Lagenaria siceraria] >AHM91117.1 ribosomal protein S2, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 56/83 (67.47%), Postives = 57/83 (68.67%), Query Frame = 0 

Query: 1  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFL 60
          MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFL
Sbjct: 13 MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61 IVGTKNKVVDSVARAATRAQCHY 66
          IVGTKNK  DSVARAATRA+CHY
Sbjct: 73 IVGTKNKAADSVARAATRARCHY 95

[Close]
BLAST of Cla97C02G033830 vs. NCBI nr
Match: AHM88876.1 (ribosomal protein S2, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 56/83 (67.47%), Postives = 57/83 (68.67%), Query Frame = 0 

Query: 1  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFL 60
          MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFL
Sbjct: 13 MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61 IVGTKNKVVDSVARAATRAQCHY 66
          IVGTKNK  DSVARAATRA+CHY
Sbjct: 73 IVGTKNKAADSVARAATRARCHY 95

[Close]
BLAST of Cla97C02G033830 vs. TrEMBL
Match: tr|X2F5D2|X2F5D2_LAGSI (30S ribosomal protein S2, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps2 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.0e-21
Identity = 56/83 (67.47%), Postives = 57/83 (68.67%), Query Frame = 0 

Query: 1  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFL 60
          MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFL
Sbjct: 13 MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61 IVGTKNKVVDSVARAATRAQCHY 66
          IVGTKNK  DSVARAATRA+CHY
Sbjct: 73 IVGTKNKAADSVARAATRARCHY 95

[Close]
BLAST of Cla97C02G033830 vs. TrEMBL
Match: tr|X2F6M8|X2F6M8_LAGSI (Ribosomal protein S2 (Fragment) OS=Lagenaria siceraria OX=3668 GN=rps2 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.0e-21
Identity = 56/83 (67.47%), Postives = 57/83 (68.67%), Query Frame = 0 

Query: 1  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFL 60
          MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFL
Sbjct: 13 MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61 IVGTKNKVVDSVARAATRAQCHY 66
          IVGTKNK  DSVARAATRA+CHY
Sbjct: 73 IVGTKNKAADSVARAATRARCHY 95

[Close]
BLAST of Cla97C02G033830 vs. TrEMBL
Match: tr|A0A0S2IFZ7|A0A0S2IFZ7_CUCMO (Ribosomal protein S2 OS=Cucurbita moschata OX=3662 GN=rps2 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.0e-21
Identity = 56/83 (67.47%), Postives = 57/83 (68.67%), Query Frame = 0 

Query: 1  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFL 60
          MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFL
Sbjct: 13 MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61 IVGTKNKVVDSVARAATRAQCHY 66
          IVGTKNK  DSVARAATRA+CHY
Sbjct: 73 IVGTKNKAADSVARAATRARCHY 95

[Close]
BLAST of Cla97C02G033830 vs. TrEMBL
Match: tr|A0A1P8LEM9|A0A1P8LEM9_CITLA (Ribosomal protein S2 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rps2 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.0e-21
Identity = 56/83 (67.47%), Postives = 57/83 (68.67%), Query Frame = 0 

Query: 1  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFL 60
          MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFL
Sbjct: 13 MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61 IVGTKNKVVDSVARAATRAQCHY 66
          IVGTKNK  DSVARAATRA+CHY
Sbjct: 73 IVGTKNKAADSVARAATRARCHY 95

[Close]
BLAST of Cla97C02G033830 vs. TrEMBL
Match: tr|A0A109WWM8|A0A109WWM8_GYNPE (30S ribosomal protein S2, chloroplastic OS=Gynostemma pentaphyllum OX=182084 GN=rps2 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.0e-21
Identity = 56/83 (67.47%), Postives = 57/83 (68.67%), Query Frame = 0 

Query: 1  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFL 60
          MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFL
Sbjct: 13 MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61 IVGTKNKVVDSVARAATRAQCHY 66
          IVGTKNK  DSVARAATRA+CHY
Sbjct: 73 IVGTKNKAADSVARAATRARCHY 95

[Close]
BLAST of Cla97C02G033830 vs. Swiss-Prot
Match: sp|B1A924|RR2_CARPA (30S ribosomal protein S2, chloroplastic OS=Carica papaya OX=3649 GN=rps2 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.7e-22
Identity = 55/83 (66.27%), Postives = 56/83 (67.47%), Query Frame = 0 

Query: 1  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFL 60
          MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFL
Sbjct: 13 MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61 IVGTKNKVVDSVARAATRAQCHY 66
          IVGTKNK  DSVARAA RA+CHY
Sbjct: 73 IVGTKNKAADSVARAAIRARCHY 95

[Close]
BLAST of Cla97C02G033830 vs. Swiss-Prot
Match: sp|Q49L09|RR2_EUCGG (30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps2 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.7e-22
Identity = 55/83 (66.27%), Postives = 56/83 (67.47%), Query Frame = 0 

Query: 1  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFL 60
          MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFL
Sbjct: 13 MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTKTARFLSEACDLVFDAASRGKQFL 72

Query: 61 IVGTKNKVVDSVARAATRAQCHY 66
          IVGTKNK  DSVARAA RA+CHY
Sbjct: 73 IVGTKNKAADSVARAAIRARCHY 95

[Close]
BLAST of Cla97C02G033830 vs. Swiss-Prot
Match: sp|Q4VZP4|RR2_CUCSA (30S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-22
Identity = 54/83 (65.06%), Postives = 56/83 (67.47%), Query Frame = 0 

Query: 1  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFL 60
          MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAA+RGKQFL
Sbjct: 13 MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAATRGKQFL 72

Query: 61 IVGTKNKVVDSVARAATRAQCHY 66
          IVGTKNK  DSVARAATR +CHY
Sbjct: 73 IVGTKNKAADSVARAATRTRCHY 95

[Close]
BLAST of Cla97C02G033830 vs. Swiss-Prot
Match: sp|P08242|RR2_SPIOL (30S ribosomal protein S2, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps2 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.9e-22
Identity = 54/83 (65.06%), Postives = 57/83 (68.67%), Query Frame = 0 

Query: 1  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFL 60
          MMEA V  GHGTRKWNPRM+ YISAK                   CDLVFDA+SRGKQFL
Sbjct: 13 MMEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASSRGKQFL 72

Query: 61 IVGTKNKVVDSVARAATRAQCHY 66
          IVGTKNK  DSVARAA RA+CHY
Sbjct: 73 IVGTKNKAADSVARAAIRARCHY 95

[Close]
BLAST of Cla97C02G033830 vs. Swiss-Prot
Match: sp|Q0ZJ31|RR2_VITVI (30S ribosomal protein S2, chloroplastic OS=Vitis vinifera OX=29760 GN=rps2 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.8e-22
Identity = 54/83 (65.06%), Postives = 56/83 (67.47%), Query Frame = 0 

Query: 1  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFL 60
          MMEA V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFL
Sbjct: 13 MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61 IVGTKNKVVDSVARAATRAQCHY 66
          IVGTKNK  DSVARAA +A+CHY
Sbjct: 73 IVGTKNKAADSVARAAIKARCHY 95

[Close]
BLAST of Cla97C02G033830 vs. TAIR10
Match: ATCG00160.1 (ribosomal protein S2)

HSP 1 Score: 101.3 bits (251), Expect = 4.0e-22
Identity = 52/83 (62.65%), Postives = 54/83 (65.06%), Query Frame = 0 

Query: 1  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLVFDAASRGKQFL 60
          MM A V  GHGTRKWNPRM  YISAK                   CDLVFDAASRGKQFL
Sbjct: 13 MMRAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61 IVGTKNKVVDSVARAATRAQCHY 66
          IVGTKNK  D V+RAA RA+CHY
Sbjct: 73 IVGTKNKAADLVSRAAIRARCHY 95

The following BLAST results are available for this feature:
BLAST of Cla97C02G033830 vs. NCBI nr
Match NameE-valueIdentityDescription
AXR94579.11.1e-2067.47ribosomal protein S2 (chloroplast) [Hodgsonia macrocarpa] >AXR94665.1 ribosomal ... [more]
YP_009317375.11.1e-2067.47ribosomal protein S2 (chloroplast) [Coccinia grandis] >YP_009325978.1 ribosomal ... [more]
AHM88761.11.1e-2067.47ribosomal protein S2, partial (chloroplast) [Lagenaria siceraria][more]
AHM88819.11.1e-2067.47ribosomal protein S2, partial (chloroplast) [Lagenaria siceraria] >AHM91117.1 ri... [more]
AHM88876.11.1e-2067.47ribosomal protein S2, partial (chloroplast) [Lagenaria siceraria][more]
BLAST of Cla97C02G033830 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|X2F5D2|X2F5D2_LAGSI7.0e-2167.4730S ribosomal protein S2, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps2 P... [more]
tr|X2F6M8|X2F6M8_LAGSI7.0e-2167.47Ribosomal protein S2 (Fragment) OS=Lagenaria siceraria OX=3668 GN=rps2 PE=3 SV=1[more]
tr|A0A0S2IFZ7|A0A0S2IFZ7_CUCMO7.0e-2167.47Ribosomal protein S2 OS=Cucurbita moschata OX=3662 GN=rps2 PE=3 SV=1[more]
tr|A0A1P8LEM9|A0A1P8LEM9_CITLA7.0e-2167.47Ribosomal protein S2 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rps2 PE=3... [more]
tr|A0A109WWM8|A0A109WWM8_GYNPE7.0e-2167.4730S ribosomal protein S2, chloroplastic OS=Gynostemma pentaphyllum OX=182084 GN=... [more]
BLAST of Cla97C02G033830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|B1A924|RR2_CARPA1.7e-2266.2730S ribosomal protein S2, chloroplastic OS=Carica papaya OX=3649 GN=rps2 PE=3 SV... [more]
sp|Q49L09|RR2_EUCGG1.7e-2266.2730S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus O... [more]
sp|Q4VZP4|RR2_CUCSA2.2e-2265.0630S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 ... [more]
sp|P08242|RR2_SPIOL2.9e-2265.0630S ribosomal protein S2, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps2 PE=... [more]
sp|Q0ZJ31|RR2_VITVI3.8e-2265.0630S ribosomal protein S2, chloroplastic OS=Vitis vinifera OX=29760 GN=rps2 PE=3 ... [more]
BLAST of Cla97C02G033830 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00160.14.0e-2262.65ribosomal protein S2[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
Vocabulary: INTERPRO
TermDefinition
IPR023591Ribosomal_S2_flav_dom_sf
IPR005706Ribosomal_S2_bac/mit/plastid
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005622 intracellular
cellular_component GO:0009536 plastid
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0043229 intracellular organelle
cellular_component GO:0030529 intracellular ribonucleoprotein complex
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G033830.1Cla97C02G033830.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.40.50.10490coord: 1..95
e-value: 7.7E-9
score: 36.9
NoneNo IPR availablePANTHERPTHR12534:SF028S RIBOSOMAL PROTEIN S2, MITOCHONDRIALcoord: 1..24
coord: 28..66
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidPANTHERPTHR1253430S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLARcoord: 1..24
coord: 28..66
IPR023591Ribosomal protein S2, flavodoxin-like domain superfamilySUPERFAMILYSSF52313Ribosomal protein S2coord: 1..68

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C02G033830ClCG02G006840Watermelon (Charleston Gray)wcgwmbB138
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G033830Watermelon (97103) v2wmbwmbB048
Cla97C02G033830Watermelon (97103) v2wmbwmbB102
Cla97C02G033830Watermelon (97103) v2wmbwmbB110
Cla97C02G033830Silver-seed gourdcarwmbB0303
Cla97C02G033830Silver-seed gourdcarwmbB0394
Cla97C02G033830Silver-seed gourdcarwmbB0477
Cla97C02G033830Silver-seed gourdcarwmbB0766
Cla97C02G033830Cucumber (Gy14) v2cgybwmbB503
Cla97C02G033830Cucumber (Gy14) v1cgywmbB395
Cla97C02G033830Cucumber (Gy14) v1cgywmbB600
Cla97C02G033830Cucurbita maxima (Rimu)cmawmbB104
Cla97C02G033830Cucurbita maxima (Rimu)cmawmbB342
Cla97C02G033830Cucurbita maxima (Rimu)cmawmbB531
Cla97C02G033830Cucurbita maxima (Rimu)cmawmbB744
Cla97C02G033830Cucurbita moschata (Rifu)cmowmbB088
Cla97C02G033830Cucurbita moschata (Rifu)cmowmbB512
Cla97C02G033830Cucurbita moschata (Rifu)cmowmbB717
Cla97C02G033830Wild cucumber (PI 183967)cpiwmbB296
Cla97C02G033830Wild cucumber (PI 183967)cpiwmbB554
Cla97C02G033830Cucumber (Chinese Long) v3cucwmbB292
Cla97C02G033830Cucumber (Chinese Long) v3cucwmbB295
Cla97C02G033830Cucumber (Chinese Long) v3cucwmbB550
Cla97C02G033830Cucumber (Chinese Long) v2cuwmbB289
Cla97C02G033830Cucumber (Chinese Long) v2cuwmbB530
Cla97C02G033830Bottle gourd (USVL1VR-Ls)lsiwmbB226
Cla97C02G033830Bottle gourd (USVL1VR-Ls)lsiwmbB229
Cla97C02G033830Bottle gourd (USVL1VR-Ls)lsiwmbB277
Cla97C02G033830Bottle gourd (USVL1VR-Ls)lsiwmbB433
Cla97C02G033830Melon (DHL92) v3.6.1medwmbB166
Cla97C02G033830Melon (DHL92) v3.6.1medwmbB469
Cla97C02G033830Melon (DHL92) v3.5.1mewmbB180
Cla97C02G033830Melon (DHL92) v3.5.1mewmbB476
Cla97C02G033830Watermelon (Charleston Gray)wcgwmbB044
Cla97C02G033830Watermelon (97103) v1wmwmbB063
Cla97C02G033830Watermelon (97103) v1wmwmbB088
Cla97C02G033830Watermelon (97103) v1wmwmbB317
Cla97C02G033830Wax gourdwgowmbB033
Cla97C02G033830Wax gourdwgowmbB243
Cla97C02G033830Wax gourdwgowmbB297