Cla97C02G030020 (gene) Watermelon (97103) v2

Overview
NameCla97C02G030020
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr02 : 3141089 .. 3141544 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGGTTTGAGATCTGTTGCTCCTGCCTGGAGTAGAGACAAAGGTGGAGCCTTATCAACCCTACCAAATTGTGTTGTAAAAACATTAGAAGAGGGGTTCTTGTACAGATTTATGTATCCTAATTTTTTAGGTTCAGGGGAAAAAAAGAGATAGATGCCAATTTCTGTCCTTGGAAAAGTGTAGGAAGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAATCATATATATATTGTTTATTTTCTATTTCTCAAATCTTTAATAATCTCAGGGATGGCAGGATTTGGTTGATCATGCATGGTTTCTTGTACTTCAAATGATGTTGAATCTACAAGTCTTCAAATTTACAATCTTTTTGATTTGGCTTGAGCTATACCATCAATTTCTTTTGGACAAAATGTCAAGATTAAGAGCTTTCGAACTTCAAATCAAAGCATAA

mRNA sequence

ATGGTGGGTTTGAGATCTGTTGCTCCTGCCTGGAGTAGAGACAAAGGTGGAGCCTTATCAACCCTACCAAATTGTGTTGTAAAAACATTAGAAGAGGGGTTCAGGGGAAAAAAAGAGATAGATGCCAATTTCTGTCCTTGGAAAAGTGGATGGCAGGATTTGGTTGATCATGCATGGTTTCTTGTACTTCAAATGATGTTGAATCTACAAGTCTTCAAATTTACAATCTTTTTGATTTGGCTTGAGCTATACCATCAATTTCTTTTGGACAAAATGTCAAGATTAAGAGCTTTCGAACTTCAAATCAAAGCATAA

Coding sequence (CDS)

ATGGTGGGTTTGAGATCTGTTGCTCCTGCCTGGAGTAGAGACAAAGGTGGAGCCTTATCAACCCTACCAAATTGTGTTGTAAAAACATTAGAAGAGGGGTTCAGGGGAAAAAAAGAGATAGATGCCAATTTCTGTCCTTGGAAAAGTGGATGGCAGGATTTGGTTGATCATGCATGGTTTCTTGTACTTCAAATGATGTTGAATCTACAAGTCTTCAAATTTACAATCTTTTTGATTTGGCTTGAGCTATACCATCAATTTCTTTTGGACAAAATGTCAAGATTAAGAGCTTTCGAACTTCAAATCAAAGCATAA

Protein sequence

MVGLRSVAPAWSRDKGGALSTLPNCVVKTLEEGFRGKKEIDANFCPWKSGWQDLVDHAWFLVLQMMLNLQVFKFTIFLIWLELYHQFLLDKMSRLRAFELQIKA
Homology
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BLAST of Cla97C02G030020 vs. NCBI nr
Match: XP_022952652.1 (bromodomain-containing protein 9-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 53.9 bits (128), Expect = 3.8e-04
Identity = 31/62 (50.00%), Postives = 34/62 (54.84%), Query Frame = 0 

Query: 1   MVGLRSVAPAWSRDKGGALSTLPNCVVKTLEEGF-------------RGKKEIDANFCPW 50
           MVGLRSVAP     K      LPNCVVKT+EEGF               KK+I ANFC W
Sbjct: 778 MVGLRSVAPG-VETKMEPYQPLPNCVVKTIEEGFLYRFMYPNFLDSGEKKKKIGANFCSW 837

The following BLAST results are available for this feature:
BLAST of Cla97C02G030020 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022952652.13.8e-0450.00bromodomain-containing protein 9-like isoform X1 [Cucurbita moschata][more]
BLAST of Cla97C02G030020 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cla97C02G030020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C02G030020 vs. TAIR10
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G030020.1Cla97C02G030020.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G030020Silver-seed gourdcarwmbB0202
Cla97C02G030020Silver-seed gourdcarwmbB0358
Cla97C02G030020Silver-seed gourdcarwmbB0892
Cla97C02G030020Silver-seed gourdcarwmbB1124
Cla97C02G030020Cucumber (Gy14) v2cgybwmbB412
Cla97C02G030020Cucumber (Gy14) v2cgybwmbB502
Cla97C02G030020Cucumber (Gy14) v1cgywmbB125
Cla97C02G030020Cucumber (Gy14) v1cgywmbB180
Cla97C02G030020Cucurbita maxima (Rimu)cmawmbB101
Cla97C02G030020Cucurbita maxima (Rimu)cmawmbB531
Cla97C02G030020Cucurbita maxima (Rimu)cmawmbB572
Cla97C02G030020Cucurbita maxima (Rimu)cmawmbB634
Cla97C02G030020Cucurbita moschata (Rifu)cmowmbB094
Cla97C02G030020Cucurbita moschata (Rifu)cmowmbB512
Cla97C02G030020Cucurbita moschata (Rifu)cmowmbB551
Cla97C02G030020Cucurbita moschata (Rifu)cmowmbB608
Cla97C02G030020Wild cucumber (PI 183967)cpiwmbB456
Cla97C02G030020Wild cucumber (PI 183967)cpiwmbB553
Cla97C02G030020Cucumber (Chinese Long) v3cucwmbB450
Cla97C02G030020Cucumber (Chinese Long) v3cucwmbB549
Cla97C02G030020Cucumber (Chinese Long) v2cuwmbB432
Cla97C02G030020Cucumber (Chinese Long) v2cuwmbB529
Cla97C02G030020Bottle gourd (USVL1VR-Ls)lsiwmbB086
Cla97C02G030020Melon (DHL92) v3.6.1medwmbB165
Cla97C02G030020Melon (DHL92) v3.5.1mewmbB179
Cla97C02G030020Watermelon (Charleston Gray)wcgwmbB138
Cla97C02G030020Watermelon (97103) v1wmwmbB317
Cla97C02G030020Wax gourdwgowmbB241