Cla97C02G028950 (gene) Watermelon (97103) v2

NameCla97C02G028950
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr02 : 2337240 .. 2337639 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCCAAGGCTTTCATCTTCCTCGGTCTTCTTTTCGTCATCGTCGTCGTCCTCTCCTCGGAGGAGGTAACCGCGATTACGGCAAGGGATGTGAAATTCAGTGAGTTTCATTTCCACACCTTTATATTAGATGATACATTGCAATTCTTTAATTTTACACTCATTTAATTACTGTTATACATACGTTGATTCTTTTGATAACATAGTGAAAGAAGCTATGATGGAAACTGATGAAGTTGACGATGTCAAGCGCCACGGTTTTGGAGGAGGGCAGGCTATATCCGTTGCCAATAATGTATGCCTCAACCGTTGCGCCCACGGTTGTTGCAGCTGCGTCCGCGGCCGTTGCATCAGGTGCTGTATTGATGAAGAGCCCCAAGCTATGCCCAGCAACTAA

mRNA sequence

ATGAGTTCCAAGGCTTTCATCTTCCTCGGTCTTCTTTTCGTCATCGTCGTCGTCCTCTCCTCGGAGGAGGTAACCGCGATTACGGCAAGGGATGTGAAATTCATGAAAGAAGCTATGATGGAAACTGATGAAGTTGACGATGTCAAGCGCCACGGTTTTGGAGGAGGGCAGGCTATATCCGTTGCCAATAATGTATGCCTCAACCGTTGCGCCCACGGTTGTTGCAGCTGCGTCCGCGGCCGTTGCATCAGGTGCTGTATTGATGAAGAGCCCCAAGCTATGCCCAGCAACTAA

Coding sequence (CDS)

ATGAGTTCCAAGGCTTTCATCTTCCTCGGTCTTCTTTTCGTCATCGTCGTCGTCCTCTCCTCGGAGGAGGTAACCGCGATTACGGCAAGGGATGTGAAATTCATGAAAGAAGCTATGATGGAAACTGATGAAGTTGACGATGTCAAGCGCCACGGTTTTGGAGGAGGGCAGGCTATATCCGTTGCCAATAATGTATGCCTCAACCGTTGCGCCCACGGTTGTTGCAGCTGCGTCCGCGGCCGTTGCATCAGGTGCTGTATTGATGAAGAGCCCCAAGCTATGCCCAGCAACTAA

Protein sequence

MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAISVANNVCLNRCAHGCCSCVRGRCIRCCIDEEPQAMPSN
BLAST of Cla97C02G028950 vs. NCBI nr
Match: XP_004144531.1 (PREDICTED: glycine-rich protein-like [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_7G037560 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 7.3e-18
Identity = 57/105 (54.29%), Postives = 70/105 (66.67%), Query Frame = 0

Query: 1   MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAIS 60
           MSSK+FI LGLLF   VVL S E   +TARD K +KEA MET EVD+V+RH +GG  + +
Sbjct: 1   MSSKSFILLGLLF--AVVLFSSEAITVTARDAK-LKEATMETGEVDNVERHSYGGAHSRN 60

Query: 61  VANNVCLNRCAHGCCSCVRGRCIRCC--------IDEEPQAMPSN 98
           +A   CL+ C  GCC C RGRCIRCC        +D +PQA P+N
Sbjct: 61  LAE--CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100

BLAST of Cla97C02G028950 vs. NCBI nr
Match: XP_022989495.1 (glycine-rich protein DC7.1-like [Cucurbita maxima])

HSP 1 Score: 57.0 bits (136), Expect = 4.1e-05
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 0

Query: 1  MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMET--DEVDDVKRHGFGGG 57
          M+SKAFI LGLLF +V++LSSEE TA TAR +K ++EA+MET  D ++D KR  FGGG
Sbjct: 1  MNSKAFIILGLLFAVVILLSSEEATA-TARGLKSVEEAVMETNGDGIEDDKRR-FGGG 56

BLAST of Cla97C02G028950 vs. NCBI nr
Match: XP_022930749.1 (glycine-rich protein DC7.1-like [Cucurbita moschata])

HSP 1 Score: 55.8 bits (133), Expect = 9.2e-05
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 0

Query: 1  MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMET--DEVDDVKRHGFGGG 57
          M+SKAFI LGLLF IV++LSSEE +A TAR +K ++EA+MET  D ++D KR  FGGG
Sbjct: 1  MNSKAFIILGLLFTIVILLSSEEASA-TARGLKSVEEAVMETNGDGIEDDKRR-FGGG 56

BLAST of Cla97C02G028950 vs. NCBI nr
Match: XP_023529828.1 (glycine-rich protein DC7.1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 0

Query: 1  MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMET--DEVDDVKRHGFGGG 57
          M+SKAFI LGLLF +V++LSSEE +A TAR +K ++E +MET  D ++D KR  FGGG
Sbjct: 1  MNSKAFIILGLLFAVVILLSSEEASA-TARGLKSVEEVVMETNGDGIEDDKRR-FGGG 56

BLAST of Cla97C02G028950 vs. TrEMBL
Match: tr|A0A0A0K5A1|A0A0A0K5A1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.8e-18
Identity = 57/105 (54.29%), Postives = 70/105 (66.67%), Query Frame = 0

Query: 1   MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAIS 60
           MSSK+FI LGLLF   VVL S E   +TARD K +KEA MET EVD+V+RH +GG  + +
Sbjct: 1   MSSKSFILLGLLF--AVVLFSSEAITVTARDAK-LKEATMETGEVDNVERHSYGGAHSRN 60

Query: 61  VANNVCLNRCAHGCCSCVRGRCIRCC--------IDEEPQAMPSN 98
           +A   CL+ C  GCC C RGRCIRCC        +D +PQA P+N
Sbjct: 61  LAE--CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004144531.17.3e-1854.29PREDICTED: glycine-rich protein-like [Cucumis sativus] >KGN43452.1 hypothetical ... [more]
XP_022989495.14.1e-0562.07glycine-rich protein DC7.1-like [Cucurbita maxima][more]
XP_022930749.19.2e-0562.07glycine-rich protein DC7.1-like [Cucurbita moschata][more]
XP_023529828.13.5e-0458.62glycine-rich protein DC7.1-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
tr|A0A0A0K5A1|A0A0A0K5A1_CUCSA4.8e-1854.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G028950.1Cla97C02G028950.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G028950Watermelon (97103) v2wmbwmbB091
Cla97C02G028950Silver-seed gourdcarwmbB0202
Cla97C02G028950Silver-seed gourdcarwmbB1124
Cla97C02G028950Cucumber (Gy14) v2cgybwmbB118
Cla97C02G028950Cucumber (Gy14) v2cgybwmbB500
Cla97C02G028950Cucumber (Gy14) v2cgybwmbB502
Cla97C02G028950Cucumber (Gy14) v1cgywmbB326
Cla97C02G028950Cucurbita maxima (Rimu)cmawmbB101
Cla97C02G028950Cucurbita maxima (Rimu)cmawmbB531
Cla97C02G028950Cucurbita moschata (Rifu)cmowmbB094
Cla97C02G028950Cucurbita moschata (Rifu)cmowmbB512
Cla97C02G028950Wild cucumber (PI 183967)cpiwmbB126
Cla97C02G028950Wild cucumber (PI 183967)cpiwmbB552
Cla97C02G028950Wild cucumber (PI 183967)cpiwmbB553
Cla97C02G028950Cucumber (Chinese Long) v3cucwmbB127
Cla97C02G028950Cucumber (Chinese Long) v3cucwmbB548
Cla97C02G028950Cucumber (Chinese Long) v3cucwmbB549
Cla97C02G028950Cucumber (Chinese Long) v2cuwmbB124
Cla97C02G028950Cucumber (Chinese Long) v2cuwmbB527
Cla97C02G028950Cucumber (Chinese Long) v2cuwmbB529
Cla97C02G028950Bottle gourd (USVL1VR-Ls)lsiwmbB055
Cla97C02G028950Bottle gourd (USVL1VR-Ls)lsiwmbB086
Cla97C02G028950Melon (DHL92) v3.6.1medwmbB090
Cla97C02G028950Melon (DHL92) v3.6.1medwmbB164
Cla97C02G028950Melon (DHL92) v3.5.1mewmbB094
Cla97C02G028950Melon (DHL92) v3.5.1mewmbB178
Cla97C02G028950Watermelon (Charleston Gray)wcgwmbB138
Cla97C02G028950Watermelon (Charleston Gray)wcgwmbB150
Cla97C02G028950Watermelon (97103) v1wmwmbB317
Cla97C02G028950Wax gourdwgowmbB241
Cla97C02G028950Wax gourdwgowmbB376