Cla97C02G028920 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G028920
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Glycine rich protein
Location	Cla97Chr02 : 2318647 .. 2319172 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCCAAAGCTTTTGTTTTCCTCGGTCTTCTTCTCGCCTTTGTTCTCCTCCTCTCTTCGGAGGTGGCCGCGAGAGACCTCGCAGAGACTTCCTCCAAGAAGGATAACGGTGAGTTCGATATAATAAGAACTCTTAACTCCTTTAAAAAGTGTAAAACCTATACTTATTATTCAACTTCTTTTTTATATATACACAAAACTTTTGGAGTCCTACCATCTTGTTATCGACATTTCCATAAAATTAAGATGGGTTGATTTTAATGATGACATTGCAGAGGCTACTGTGGAGACCAATGGTGTAGAGGATGCCAAGTATGGAGGGTACGATAGAGGCTATGGTGGTCGTGATCGTTACGGCCATGGTGGCTATGGCGGTCGTGGTGGCTACGGAGGCCGTGGTGGCTACGGAGGCCGTGGTGGTTACGGTGACCGTGGTGGCTACGGAGGAGGTTGCCGGTATGGTCGATGCGGGTACAGGTGCTGCAGCTACGCTGGTGAAGTGGTAGAGGGCGCAAAACCCTAA

mRNA sequence

ATGAGTTCCAAAGCTTTTGTTTTCCTCGGTCTTCTTCTCGCCTTTGTTCTCCTCCTCTCTTCGGAGGTGGCCGCGAGAGACCTCGCAGAGACTTCCTCCAAGAAGGATAACGAGGCTACTGTGGAGACCAATGGTGTAGAGGATGCCAAGTATGGAGGGTACGATAGAGGCTATGGTGGTCGTGATCGTTACGGCCATGGTGGCTATGGCGGTCGTGGTGGCTACGGAGGCCGTGGTGGCTACGGAGGCCGTGGTGGTTACGGTGACCGTGGTGGCTACGGAGGAGGTTGCCGGTATGGTCGATGCGGGTACAGGTGCTGCAGCTACGCTGGTGAAGTGGTAGAGGGCGCAAAACCCTAA

Coding sequence (CDS)

ATGAGTTCCAAAGCTTTTGTTTTCCTCGGTCTTCTTCTCGCCTTTGTTCTCCTCCTCTCTTCGGAGGTGGCCGCGAGAGACCTCGCAGAGACTTCCTCCAAGAAGGATAACGAGGCTACTGTGGAGACCAATGGTGTAGAGGATGCCAAGTATGGAGGGTACGATAGAGGCTATGGTGGTCGTGATCGTTACGGCCATGGTGGCTATGGCGGTCGTGGTGGCTACGGAGGCCGTGGTGGCTACGGAGGCCGTGGTGGTTACGGTGACCGTGGTGGCTACGGAGGAGGTTGCCGGTATGGTCGATGCGGGTACAGGTGCTGCAGCTACGCTGGTGAAGTGGTAGAGGGCGCAAAACCCTAA

Protein sequence

MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKKDNEATVETNGVEDAKYGGYDRGYGGRDRYGHGGYGGRGGYGGRGGYGGRGGYGDRGGYGGGCRYGRCGYRCCSYAGEVVEGAKP

Homology

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BLAST of Cla97C02G028920 vs. NCBI nr
Match: XP_022952570.1 (cold and drought-regulated protein CORA-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 119.0 bits (297), Expect = 1.1e-23
Identity = 106/119 (89.08%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKKDNEATVETNGVEDAKYGGYDRGYGG 60
           MSSKAF+FLGLL A VLL+SSEVAARDLAETS+KK+NEAT ETNGVEDAKYGGYD GY  
Sbjct: 19  MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYXX 78

Query: 61  RDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCGYRCCSYAGEVVEGAKP 120
             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CGYRCCSYAGEVVEGAKP
Sbjct: 79  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGYRCCSYAGEVVEGAKP 137

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BLAST of Cla97C02G028920 vs. NCBI nr
Match: XP_022952571.1 (glycine-rich protein-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 99/119 (83.19%), Postives = 103/119 (86.55%), Query Frame = 0


Query: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKKDNEATVETNGVEDAKYGGYDRGYGG 60
           MSSKAF+FLGLL A VLL+SSEVAARDLAETS+KK+NEAT ETNGVEDAKYGGYD GY  
Sbjct: 19  MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGY-- 78

Query: 61  RDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCGYRCCSYAGEVVEGAKP 120
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CGYRCCSYAGEVVEGAKP
Sbjct: 79  ---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGYRCCSYAGEVVEGAKP 126

[Close]

BLAST of Cla97C02G028920 vs. NCBI nr
Match: XP_022969295.1 (glycine-rich protein-like [Cucurbita maxima])

HSP 1 Score: 113.6 bits (283), Expect = 4.6e-22
Identity = 105/120 (87.50%), Postives = 110/120 (91.67%), Query Frame = 0


Query: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKKDNEATVETNGVEDAKYGGYDRGY-G 60
           MSSKAF+FLGLL AF+LL+SSEVAARDLAETS+ K+ EATVETNGVEDAKYGGYD GY  
Sbjct: 19  MSSKAFIFLGLLFAFILLISSEVAARDLAETSANKEKEATVETNGVEDAKYGGYDGGYXX 78

Query: 61  GRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCGYRCCSYAGEVVEGAKP 120
              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CGYRCCSYAGEVVEGAKP
Sbjct: 79  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGYRCCSYAGEVVEGAKP 138

[Close]

BLAST of Cla97C02G028920 vs. NCBI nr
Match: XP_023554637.1 (cold and drought-regulated protein CORA-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.8 bits (281), Expect = 7.8e-22
Identity = 104/120 (86.67%), Postives = 110/120 (91.67%), Query Frame = 0


Query: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKKDNEATVETNGVEDAKYGGYDRGY-G 60
           MSSKAF+FLG L A +L++SSEVAARDLAETS+KK+NEATVETNGVEDAKYGGYD GY  
Sbjct: 19  MSSKAFIFLGFLFALILVISSEVAARDLAETSAKKENEATVETNGVEDAKYGGYDGGYXX 78

Query: 61  GRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCGYRCCSYAGEVVEGAKP 120
              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CGYRCCSYAGEVVEGAKP
Sbjct: 79  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGYRCCSYAGEVVEGAKP 138

[Close]

BLAST of Cla97C02G028920 vs. NCBI nr
Match: XP_023554636.1 (cold and drought-regulated protein CORA-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.8 bits (281), Expect = 7.8e-22
Identity = 104/120 (86.67%), Postives = 110/120 (91.67%), Query Frame = 0


Query: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKKDNEATVETNGVEDAKYGGYDRGY-G 60
           MSSKAF+FLG L A +L++SSEVAARDLAETS+KK+NEATVETNGVEDAKYGGYD GY  
Sbjct: 1   MSSKAFIFLGFLFALILVISSEVAARDLAETSAKKENEATVETNGVEDAKYGGYDGGYXX 60

Query: 61  GRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCGYRCCSYAGEVVEGAKP 120
              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CGYRCCSYAGEVVEGAKP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGYRCCSYAGEVVEGAKP 120

[Close]

BLAST of Cla97C02G028920 vs. TrEMBL
Match: tr|A0A0A0K6L7|A0A0A0K6L7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037600 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.7e-21
Identity = 109/121 (90.08%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKKDNEATVETNGVEDAKY--GGYDRGY 60
           MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSK DNEATVETNGVEDAKY  GGYDRGY
Sbjct: 20  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 79

Query: 61  GGRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCGYRCCSYAGEVVEGAK 120
               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +CCSYAGEVVEGAK
Sbjct: 80  --XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEGAK 138

[Close]

BLAST of Cla97C02G028920 vs. TrEMBL
Match: tr|A0P8W6|A0P8W6_CUCSA (Cell wall glycine-rich protein OS=Cucumis sativus OX=3659 GN=CsGRP1 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.7e-21
Identity = 109/121 (90.08%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKKDNEATVETNGVEDAKY--GGYDRGY 60
           MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSK DNEATVETNGVEDAKY  GGYDRGY
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  GGRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCGYRCCSYAGEVVEGAK 120
               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +CCSYAGEVVEGAK
Sbjct: 61  --XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEGAK 119

[Close]

BLAST of Cla97C02G028920 vs. TrEMBL
Match: tr|A0A0A1IXP4|A0A0A1IXP4_CUCSA (Glycine rich protein OS=Cucumis sativus OX=3659 GN=GRP PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 108/121 (89.26%), Postives = 109/121 (90.08%), Query Frame = 0


Query: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKKDNEATVETNGVEDAKY--GGYDRGY 60
           MSSKAFVFLGL LAFVLLLSSEVAARDLAETSSK DNEATVETNGVEDAKY  GGYDRGY
Sbjct: 1   MSSKAFVFLGLFLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  GGRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCGYRCCSYAGEVVEGAK 120
               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +CCSYAGEVVEGAK
Sbjct: 61  --XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEGAK 119

[Close]

BLAST of Cla97C02G028920 vs. TrEMBL
Match: tr|A0A1S3C180|A0A1S3C180_CUCME (cold and drought-regulated protein CORA-like OS=Cucumis melo OX=3656 GN=LOC103495657 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.1e-19
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKKDNEATVETNGVEDAKY-GGYDRGYG 60
          MSSKAFVFLGLLLAFVLLLSSEVAARDLAET SK DNEATVETNGVEDAKY GGYDRGYG
Sbjct: 1  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDNEATVETNGVEDAKYGGGYDRGYG 60

[Close]

BLAST of Cla97C02G028920 vs. TrEMBL
Match: tr|A0A0A0K1B1|A0A0A0K1B1_CUCSA (Cell wall glycine-rich protein OS=Cucumis sativus OX=3659 GN=Csa_7G037590 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.0e-17
Identity = 56/60 (93.33%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKKDNEATVETNGVEDAKY--GGYDRGY 59
          MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSK DNE TVETNGVEDAKY  GGYDRGY
Sbjct: 1  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEVTVETNGVEDAKYGRGGYDRGY 60

[Close]

BLAST of Cla97C02G028920 vs. Swiss-Prot
Match: sp|Q09134|GRPA_MEDSF (Abscisic acid and environmental stress-inducible protein OS=Medicago sativa subsp. falcata OX=3878 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.5e-04
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 0


Query: 16 VLLLSSEVAARDLAETSSKKDNEATVETNGVEDAKYGG 54
          VLL+SSEV+ARDL ET+S    E   +TN V DAKYGG
Sbjct: 2  VLLISSEVSARDLTETTSDAKKEVVEKTNEVNDAKYGG 39

The following BLAST results are available for this feature:

BLAST of Cla97C02G028920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952570.1	1.1e-23	89.08	cold and drought-regulated protein CORA-like isoform X1 [Cucurbita moschata]	[more]
XP_022952571.1	1.2e-22	83.19	glycine-rich protein-like isoform X2 [Cucurbita moschata]	[more]
XP_022969295.1	4.6e-22	87.50	glycine-rich protein-like [Cucurbita maxima]	[more]
XP_023554637.1	7.8e-22	86.67	cold and drought-regulated protein CORA-like isoform X2 [Cucurbita pepo subsp. p...	[more]
XP_023554636.1	7.8e-22	86.67	cold and drought-regulated protein CORA-like isoform X1 [Cucurbita pepo subsp. p...	[more]

BLAST of Cla97C02G028920 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K6L7\|A0A0A0K6L7_CUCSA	5.7e-21	90.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037600 PE=4 SV=1	[more]
tr\|A0P8W6\|A0P8W6_CUCSA	5.7e-21	90.08	Cell wall glycine-rich protein OS=Cucumis sativus OX=3659 GN=CsGRP1 PE=2 SV=1	[more]
tr\|A0A0A1IXP4\|A0A0A1IXP4_CUCSA	1.7e-20	89.26	Glycine rich protein OS=Cucumis sativus OX=3659 GN=GRP PE=2 SV=1	[more]
tr\|A0A1S3C180\|A0A1S3C180_CUCME	9.1e-19	95.08	cold and drought-regulated protein CORA-like OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
tr\|A0A0A0K1B1\|A0A0A0K1B1_CUCSA	1.0e-17	93.33	Cell wall glycine-rich protein OS=Cucumis sativus OX=3659 GN=Csa_7G037590 PE=4 S...	[more]

BLAST of Cla97C02G028920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q09134\|GRPA_MEDSF	6.5e-04	63.16	Abscisic acid and environmental stress-inducible protein OS=Medicago sativa subs...	[more]

BLAST of Cla97C02G028920 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010800	GRP

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G028920.1	Cla97C02G028920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010800	Glycine rich protein	PFAM	PF07172	GRP	coord: 1..97 e-value: 2.7E-19 score: 69.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..52
None	No IPR available	PANTHER	PTHR37389:SF3	FUNGUS-INDUCED PROTEIN	coord: 1..115
None	No IPR available	PANTHER	PTHR37389	FAMILY NOT NAMED	coord: 1..115

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G028920	Watermelon (97103) v2	wmbwmbB091
Cla97C02G028920	Silver-seed gourd	carwmbB0202
Cla97C02G028920	Silver-seed gourd	carwmbB1124
Cla97C02G028920	Cucumber (Gy14) v2	cgybwmbB118
Cla97C02G028920	Cucumber (Gy14) v2	cgybwmbB500
Cla97C02G028920	Cucumber (Gy14) v2	cgybwmbB502
Cla97C02G028920	Cucumber (Gy14) v1	cgywmbB326
Cla97C02G028920	Cucurbita maxima (Rimu)	cmawmbB101
Cla97C02G028920	Cucurbita maxima (Rimu)	cmawmbB531
Cla97C02G028920	Cucurbita moschata (Rifu)	cmowmbB094
Cla97C02G028920	Cucurbita moschata (Rifu)	cmowmbB512
Cla97C02G028920	Wild cucumber (PI 183967)	cpiwmbB126
Cla97C02G028920	Wild cucumber (PI 183967)	cpiwmbB552
Cla97C02G028920	Wild cucumber (PI 183967)	cpiwmbB553
Cla97C02G028920	Cucumber (Chinese Long) v3	cucwmbB127
Cla97C02G028920	Cucumber (Chinese Long) v3	cucwmbB548
Cla97C02G028920	Cucumber (Chinese Long) v3	cucwmbB549
Cla97C02G028920	Cucumber (Chinese Long) v2	cuwmbB124
Cla97C02G028920	Cucumber (Chinese Long) v2	cuwmbB527
Cla97C02G028920	Cucumber (Chinese Long) v2	cuwmbB529
Cla97C02G028920	Bottle gourd (USVL1VR-Ls)	lsiwmbB055
Cla97C02G028920	Bottle gourd (USVL1VR-Ls)	lsiwmbB086
Cla97C02G028920	Melon (DHL92) v3.6.1	medwmbB090
Cla97C02G028920	Melon (DHL92) v3.6.1	medwmbB164
Cla97C02G028920	Melon (DHL92) v3.5.1	mewmbB094
Cla97C02G028920	Melon (DHL92) v3.5.1	mewmbB178
Cla97C02G028920	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G028920	Watermelon (Charleston Gray)	wcgwmbB150
Cla97C02G028920	Watermelon (97103) v1	wmwmbB317
Cla97C02G028920	Wax gourd	wgowmbB241
Cla97C02G028920	Wax gourd	wgowmbB376