Cla97C02G027780 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G027780
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Wound-responsive family protein
Location	Cla97Chr02 : 1405562 .. 1405819 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCATCAACGAGAGCTTGGGTTGTAGCCGCCAGTGTGGGCGTCGTGGAAGCCTTAAAAGATCAAGGAATTTGCCGATGGAATCAAACCATTAGATCGGCGCATCAATACGCCAAAAATCATGTCAGATCGGTGCCTCAGGCCACCAGATTGAGTGGCTCTTCCGCCGCCGTGGTTTCCGGCAAGCAACAGCAGAAGCAATCGGAAGAATCATTCAGAACCGTCATGTATTTGAGCTGTTGGGGTCCCAATTAA

mRNA sequence

ATGAGTTCATCAACGAGAGCTTGGGTTGTAGCCGCCAGTGTGGGCGTCGTGGAAGCCTTAAAAGATCAAGGAATTTGCCGATGGAATCAAACCATTAGATCGGCGCATCAATACGCCAAAAATCATGTCAGATCGGTGCCTCAGGCCACCAGATTGAGTGGCTCTTCCGCCGCCGTGGTTTCCGGCAAGCAACAGCAGAAGCAATCGGAAGAATCATTCAGAACCGTCATGTATTTGAGCTGTTGGGGTCCCAATTAA

Coding sequence (CDS)

ATGAGTTCATCAACGAGAGCTTGGGTTGTAGCCGCCAGTGTGGGCGTCGTGGAAGCCTTAAAAGATCAAGGAATTTGCCGATGGAATCAAACCATTAGATCGGCGCATCAATACGCCAAAAATCATGTCAGATCGGTGCCTCAGGCCACCAGATTGAGTGGCTCTTCCGCCGCCGTGGTTTCCGGCAAGCAACAGCAGAAGCAATCGGAAGAATCATTCAGAACCGTCATGTATTTGAGCTGTTGGGGTCCCAATTAA

Protein sequence

MSSSTRAWVVAASVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLSGSSAAVVSGKQQQKQSEESFRTVMYLSCWGPN

Homology

[Close]

BLAST of Cla97C02G027780 vs. NCBI nr
Match: XP_008455356.1 (PREDICTED: uncharacterized protein LOC103495543 [Cucumis melo])

HSP 1 Score: 157.1 bits (396), Expect = 2.6e-35
Identity = 77/85 (90.59%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MSSSTRAWVVAASVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLSGSSAAVV 60
          MSSS RAW+VAASVGVVEALKDQGICRWN TIRSAHQYA+NHVRSVPQATRL+GSSAAVV
Sbjct: 1  MSSSRRAWIVAASVGVVEALKDQGICRWNHTIRSAHQYARNHVRSVPQATRLTGSSAAVV 60

Query: 61 SGKQQQKQSEESFRTVMYLSCWGPN 86
          S K QQKQSEES RTVMYLSCWGPN
Sbjct: 61 SSKPQQKQSEESLRTVMYLSCWGPN 85

[Close]

BLAST of Cla97C02G027780 vs. NCBI nr
Match: XP_022969311.1 (uncharacterized protein LOC111468355 [Cucurbita maxima])

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 67/85 (78.82%), Postives = 72/85 (84.71%), Query Frame = 0


Query: 1  MSSSTRAWVVAASVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLSGSSAAVV 60
          MSSS RAWVVAASVGVVEALKDQG+CRWN TI+S  QYAKNHVRSV QA +LS +S A V
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAV 60

Query: 61 SGKQQQKQSEESFRTVMYLSCWGPN 86
          S  Q+ KQSEES RTVMYLSCWGPN
Sbjct: 61 S-DQKWKQSEESLRTVMYLSCWGPN 84

[Close]

BLAST of Cla97C02G027780 vs. NCBI nr
Match: XP_023554652.1 (uncharacterized protein LOC111811840 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27
Identity = 67/85 (78.82%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 1  MSSSTRAWVVAASVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLSGSSAAVV 60
          MSSS RAWVVAASVGVVEALKDQG+CRWN TI+S  QYAKNHVRSV QA +LS  S A V
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60

Query: 61 SGKQQQKQSEESFRTVMYLSCWGPN 86
          S  Q+ KQSEES RTVMYLSCWGPN
Sbjct: 61 S-DQKWKQSEESLRTVMYLSCWGPN 84

[Close]

BLAST of Cla97C02G027780 vs. NCBI nr
Match: XP_022136037.1 (uncharacterized protein LOC111007826 [Momordica charantia])

HSP 1 Score: 130.6 bits (327), Expect = 2.6e-27
Identity = 67/83 (80.72%), Postives = 70/83 (84.34%), Query Frame = 0


Query: 3  SSTRAWVVAASVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLSGSSAAVVSG 62
          SSTRAWVVAASVGVVEALKDQGICRWN TIRS H  AKNHVRS+PQATRLS SS+A    
Sbjct: 5  SSTRAWVVAASVGVVEALKDQGICRWNHTIRSLHHCAKNHVRSLPQATRLSASSSA---- 64

Query: 63 KQQQKQSEESFRTVMYLSCWGPN 86
           +  KQSEES RTVMYLSCWGPN
Sbjct: 65 -KHPKQSEESLRTVMYLSCWGPN 82

[Close]

BLAST of Cla97C02G027780 vs. NCBI nr
Match: XP_022952158.1 (uncharacterized protein LOC111454919 [Cucurbita moschata])

HSP 1 Score: 129.0 bits (323), Expect = 7.5e-27
Identity = 66/85 (77.65%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 1  MSSSTRAWVVAASVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLSGSSAAVV 60
          MSSS RAWVVAASVGVVEALKDQG+CRWN  I+S  QYAKNHVRSV QA +LS  S A V
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHAIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60

Query: 61 SGKQQQKQSEESFRTVMYLSCWGPN 86
          S  Q+ KQSEES RTVMYLSCWGPN
Sbjct: 61 S-DQKWKQSEESLRTVMYLSCWGPN 84

[Close]

BLAST of Cla97C02G027780 vs. TrEMBL
Match: tr|A0A1S3C1F8|A0A1S3C1F8_CUCME (uncharacterized protein LOC103495543 OS=Cucumis melo OX=3656 GN=LOC103495543 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.7e-35
Identity = 77/85 (90.59%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MSSSTRAWVVAASVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLSGSSAAVV 60
          MSSS RAW+VAASVGVVEALKDQGICRWN TIRSAHQYA+NHVRSVPQATRL+GSSAAVV
Sbjct: 1  MSSSRRAWIVAASVGVVEALKDQGICRWNHTIRSAHQYARNHVRSVPQATRLTGSSAAVV 60

Query: 61 SGKQQQKQSEESFRTVMYLSCWGPN 86
          S K QQKQSEES RTVMYLSCWGPN
Sbjct: 61 SSKPQQKQSEESLRTVMYLSCWGPN 85

[Close]

BLAST of Cla97C02G027780 vs. TrEMBL
Match: tr|A0A1U8JPJ4|A0A1U8JPJ4_GOSHI (uncharacterized protein LOC107909242 OS=Gossypium hirsutum OX=3635 GN=LOC107909242 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.5e-27
Identity = 64/86 (74.42%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1  MSSSTRAWVVAASVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLSG-SSAAV 60
          MSSS+RAW+VAAS+G VEALKDQGICRWN T+RS  Q+AKNHVRS  QA  LS  SSAA+
Sbjct: 1  MSSSSRAWIVAASIGAVEALKDQGICRWNYTVRSVVQHAKNHVRSASQAKNLSSQSSAAI 60

Query: 61 VSGKQQQKQSEESFRTVMYLSCWGPN 86
            G +Q KQSEES RTVMYLSCWGPN
Sbjct: 61 CKGLRQSKQSEESLRTVMYLSCWGPN 86

[Close]

BLAST of Cla97C02G027780 vs. TrEMBL
Match: tr|A0A1S3C0Q4|A0A1S3C0Q4_CUCME (uncharacterized protein LOC103495542 OS=Cucumis melo OX=3656 GN=LOC103495542 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.5e-26
Identity = 65/85 (76.47%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 1  MSSSTRAWVVAASVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLSGSSAAVV 60
          MS S + WVVAASVGVVEALKDQGICRWN TIRS  QYAKNHVRS+ QA +LS  SAA V
Sbjct: 1  MSCSRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAATV 60

Query: 61 SGKQQQKQSEESFRTVMYLSCWGPN 86
          S   + KQSEES RTVMYLSCWGPN
Sbjct: 61 S-DHRWKQSEESLRTVMYLSCWGPN 84

[Close]

BLAST of Cla97C02G027780 vs. TrEMBL
Match: tr|A0A1U8HJQ3|A0A1U8HJQ3_GOSHI (uncharacterized protein LOC107886740 OS=Gossypium hirsutum OX=3635 GN=LOC107886740 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.5e-26
Identity = 62/86 (72.09%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 1  MSSSTRAWVVAASVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLSG-SSAAV 60
          MSS++RAW+VAAS+G VEALKDQGICRWN T+RSA Q+AKNH+RS  QA  LS  SSAA+
Sbjct: 1  MSSTSRAWIVAASIGAVEALKDQGICRWNYTVRSAVQHAKNHMRSASQAKNLSSQSSAAI 60

Query: 61 VSGKQQQKQSEESFRTVMYLSCWGPN 86
            G +Q KQSEE+ RTVMYLSCWGPN
Sbjct: 61 CKGLRQSKQSEEALRTVMYLSCWGPN 86

[Close]

BLAST of Cla97C02G027780 vs. TrEMBL
Match: tr|A0A1U8JPM1|A0A1U8JPM1_GOSHI (uncharacterized protein LOC107909241 OS=Gossypium hirsutum OX=3635 GN=LOC107909241 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.5e-26
Identity = 63/86 (73.26%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1  MSSSTRAWVVAASVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLSG-SSAAV 60
          MSS++RAWVVAAS+G VEALKDQGICRWN T+RS  Q+AKNHVRS  QA  LS  SSAA+
Sbjct: 1  MSSTSRAWVVAASIGAVEALKDQGICRWNYTVRSVVQHAKNHVRSASQAKNLSSQSSAAI 60

Query: 61 VSGKQQQKQSEESFRTVMYLSCWGPN 86
          + G  + KQSEES RTVMYLSCWGPN
Sbjct: 61 LKGLNKSKQSEESLRTVMYLSCWGPN 86

[Close]

BLAST of Cla97C02G027780 vs. TAIR10
Match: AT4G10265.1 (Wound-responsive family protein)

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-23
Identity = 53/86 (61.63%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 1  MSSSTRAWVVAASVGVVEALKDQ-GICRWNQTIRSAHQYAKNHVRSVPQATRLSGSSAAV 60
          MSS+++ W+VAAS+G VEALKDQ G+CRWN  IRSA+QY +N++RSV QA +LS SS   
Sbjct: 1  MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSS--- 60

Query: 61 VSGKQQQKQSEESFRTVMYLSCWGPN 86
          +    + KQ+EES RTVMYLSCWGP+
Sbjct: 61 IDYTNKTKQAEESLRTVMYLSCWGPS 83

[Close]

BLAST of Cla97C02G027780 vs. TAIR10
Match: AT4G10270.1 (Wound-responsive family protein)

HSP 1 Score: 102.8 bits (255), Expect = 1.0e-22
Identity = 54/90 (60.00%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 1  MSSSTRAWVVAASVGVVEALKDQ-GICRWNQTIRSAHQYAKNHVRSVPQATRLSGS--SA 60
          MSS+++AW VA S+G VEALKDQ G+CRWN  +RS +Q+ +N+VRSV Q  R S S  SA
Sbjct: 1  MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query: 61 AVVSG--KQQQKQSEESFRTVMYLSCWGPN 86
          AV S    ++ K++EES RTVMYLSCWGPN
Sbjct: 61 AVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of Cla97C02G027780 vs. TAIR10
Match: AT4G33560.1 (Wound-responsive family protein)

HSP 1 Score: 56.6 bits (135), Expect = 8.6e-09
Identity = 31/83 (37.35%), Postives = 42/83 (50.60%), Query Frame = 0


Query: 7  AWVVAASVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSV-----PQATRLSGSSAAVVS 66
          +W VA ++  VE LKDQG+ RWN   R  H+ A   VR++     P     S S+ ++ S
Sbjct: 8  SWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIRS 67

Query: 67 GKQQQKQSEESFRTVMYLSCWGP 85
                  E SF   M LSC+GP
Sbjct: 68 KPLSTTPFETSFEKAMGLSCFGP 90

The following BLAST results are available for this feature:

BLAST of Cla97C02G027780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455356.1	2.6e-35	90.59	PREDICTED: uncharacterized protein LOC103495543 [Cucumis melo]	[more]
XP_022969311.1	1.2e-27	78.82	uncharacterized protein LOC111468355 [Cucurbita maxima]	[more]
XP_023554652.1	2.0e-27	78.82	uncharacterized protein LOC111811840 [Cucurbita pepo subsp. pepo]	[more]
XP_022136037.1	2.6e-27	80.72	uncharacterized protein LOC111007826 [Momordica charantia]	[more]
XP_022952158.1	7.5e-27	77.65	uncharacterized protein LOC111454919 [Cucurbita moschata]	[more]

BLAST of Cla97C02G027780 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C1F8\|A0A1S3C1F8_CUCME	1.7e-35	90.59	uncharacterized protein LOC103495543 OS=Cucumis melo OX=3656 GN=LOC103495543 PE=...	[more]
tr\|A0A1U8JPJ4\|A0A1U8JPJ4_GOSHI	6.5e-27	74.42	uncharacterized protein LOC107909242 OS=Gossypium hirsutum OX=3635 GN=LOC1079092...	[more]
tr\|A0A1S3C0Q4\|A0A1S3C0Q4_CUCME	2.5e-26	76.47	uncharacterized protein LOC103495542 OS=Cucumis melo OX=3656 GN=LOC103495542 PE=...	[more]
tr\|A0A1U8HJQ3\|A0A1U8HJQ3_GOSHI	2.5e-26	72.09	uncharacterized protein LOC107886740 OS=Gossypium hirsutum OX=3635 GN=LOC1078867...	[more]
tr\|A0A1U8JPM1\|A0A1U8JPM1_GOSHI	2.5e-26	73.26	uncharacterized protein LOC107909241 OS=Gossypium hirsutum OX=3635 GN=LOC1079092...	[more]

BLAST of Cla97C02G027780 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G027780 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10265.1	1.2e-23	61.63	Wound-responsive family protein	[more]
AT4G10270.1	1.0e-22	60.00	Wound-responsive family protein	[more]
AT4G33560.1	8.6e-09	37.35	Wound-responsive family protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022251	DUF3774_wound-induced

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G027780.1	Cla97C02G027780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 10..84 e-value: 1.5E-32 score: 112.3
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	FAMILY NOT NAMED	coord: 1..85
None	No IPR available	PANTHER	PTHR33090:SF8	SUBFAMILY NOT NAMED	coord: 1..85

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G027780	Melon (DHL92) v3.6.1	medwmbB164
Cla97C02G027780	Melon (DHL92) v3.5.1	mewmbB178
Cla97C02G027780	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G027780	Watermelon (Charleston Gray)	wcgwmbB184
Cla97C02G027780	Watermelon (97103) v1	wmwmbB122
Cla97C02G027780	Watermelon (97103) v1	wmwmbB324
Cla97C02G027780	Wax gourd	wgowmbB251
Cla97C02G027780	Wax gourd	wgowmbB365
Cla97C02G027780	Watermelon (97103) v2	wmbwmbB096
Cla97C02G027780	Silver-seed gourd	carwmbB0027
Cla97C02G027780	Silver-seed gourd	carwmbB0348
Cla97C02G027780	Silver-seed gourd	carwmbB0752
Cla97C02G027780	Silver-seed gourd	carwmbB0915
Cla97C02G027780	Silver-seed gourd	carwmbB0974
Cla97C02G027780	Cucumber (Gy14) v2	cgybwmbB502
Cla97C02G027780	Cucumber (Gy14) v1	cgywmbB248
Cla97C02G027780	Cucurbita maxima (Rimu)	cmawmbB105
Cla97C02G027780	Cucurbita maxima (Rimu)	cmawmbB221
Cla97C02G027780	Cucurbita maxima (Rimu)	cmawmbB531
Cla97C02G027780	Cucurbita maxima (Rimu)	cmawmbB618
Cla97C02G027780	Cucurbita maxima (Rimu)	cmawmbB883
Cla97C02G027780	Cucurbita moschata (Rifu)	cmowmbB094
Cla97C02G027780	Cucurbita moschata (Rifu)	cmowmbB512
Cla97C02G027780	Cucurbita moschata (Rifu)	cmowmbB552
Cla97C02G027780	Cucurbita moschata (Rifu)	cmowmbB593
Cla97C02G027780	Cucurbita moschata (Rifu)	cmowmbB650
Cla97C02G027780	Wild cucumber (PI 183967)	cpiwmbB030
Cla97C02G027780	Wild cucumber (PI 183967)	cpiwmbB553
Cla97C02G027780	Cucumber (Chinese Long) v3	cucwmbB549
Cla97C02G027780	Cucumber (Chinese Long) v2	cuwmbB029
Cla97C02G027780	Cucumber (Chinese Long) v2	cuwmbB529
Cla97C02G027780	Bottle gourd (USVL1VR-Ls)	lsiwmbB060
Cla97C02G027780	Bottle gourd (USVL1VR-Ls)	lsiwmbB086