Cla97C02G027700 (gene) Watermelon (97103) v2

Overview
NameCla97C02G027700
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr02 : 1341206 .. 1342718 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGCGATAGGATCTGATAATAGCTCCACAAAAAGTGCAAATAATGGCTCTCCAAGACCTCCAATAAAATGGGACGAAACAGAATCTAGTGGCGGTCTTCATGTCGGCGACGCTGGCTCCGCCGCCGCATCGGGAACAAAAACCGGCAGCCGGTTTGCTCCGCCGCACCTGACGGGTCTGATCCACGAGAAAACAAAAGCAAACCATTTTTTTCCCCCTTCTAGTTGTTGGAGAGTGATAGAGAGAGGGGTGAAGAGTTTGAAGTGCATGAAATGTGTTAAAAAGGTTGAGCCTTTATATAAAGATTTTTGAACCTCACCCACTTGCAATGGTCAATAAAATTGGTTGTGAAGGAGAAAAAAAAAAAAAACAAAACGAGTAAAATTACCATTTTGGTCATTTATAATTAAATTTTAGGAAAAATGCCCATTCCTACAACGGTTACAATTTAACCTCATCACTTCGCATAAATATATATTGATTTGTGGAAAAATCTAGAGTTAAACTTATAACTAATTGTATCAGTTAAAATTCATAAAGCATGAATTAATTTAAATTTTTAGACATTATTTCTTTTGGAAATTAAATTGTTCATGCATTTACTCTATTAGTTTATTTTGTTAAATTTATATTTGAAGAAGTTTAAATACTTTTGAGAATTAATGTTCGGATGATTTACAAAGTTAATTACAATGACATGTCTAAATTGATTGACTTATGAAAGCTTAAAATTTAAGTCGATACAATTATTAGTTTATGATTTTAATTTTAATACAATTATCTAGGATTAGATGTATCCATTGATATTTCTCCTAATTTTTATTGTAACTCATTGGTATCAAAGCATGTATTGTGTTTAAACTCTTATAAAATAATTTTATTTTTAATTAATATTGATTTTTAATTGTTAAACATTCTACAAAAGTTTTAAAACTCACAAATTAAGAGAGTGTTGAAATATTGATGTAATTAAATTTAGTTAGTGAGGCACTCATTTTCAACTCATCATTTAATTATTATTTTTTTAAAATTTTGGACACTATCACCACAAGTGGAGTTTTTTTTTTAAGAATGTTAGACAAAATGAACATTAAACAATGTGTTGAGATTCGAATTTTTCATAGTGTAAAATTGAATCATATGGAATAATATATTGAAACACTTAAACAAAGTTGAAAAATTAAGATGAAAAATTATGAAAATAAAATTTATAATTGAAGGAGGAAAAAGAAAAAAGAAAAAAGAAAAAAGAAAAGATGTAGTGTGAAAGTACGAAAGAGTACATGGAAGTTAGTTAGGTCACACGAAAAGGGATATTTGGTAAGAAGAGGGGTGGGAATGGGCAATTAATGGGAGGATGCGTGTCATGTTGGTCATTACAAAACAGTTGGAGGGTAAAAGTTGAAATAAAATCCTGGCCGTACAGCTGGAAAATCATAAAATTGAAGTATTAAATAATTATGGAGCTCCCACTGTTTTAGATGCAATGTATGTGAGTGGCGGCTTCTGA

mRNA sequence

ATGTCAGCGATAGGATCTGATAATAGCTCCACAAAAAGTGCAAATAATGGCTCTCCAAGACCTCCAATAAAATGGGACGAAACAGAATCTAGTGGCGGTCTTCATGTCGGCGACGCTGGCTCCGCCGCCGCATCGGGAACAAAAACCGGCAGCCGGTTTGCTCCGCCGCACCTGACGGGTCTGATCCACGAGAAAACAAAAGCAAACCATTTTTTTCCCCCTTCTAGTTGTTGGAGAGTGATAGAGAGAGGGGTGAAGAGTTTGAAGTGCATGAAATGTGTTAAAAAGTTGGAGGATGCAATGTATGTGAGTGGCGGCTTCTGA

Coding sequence (CDS)

ATGTCAGCGATAGGATCTGATAATAGCTCCACAAAAAGTGCAAATAATGGCTCTCCAAGACCTCCAATAAAATGGGACGAAACAGAATCTAGTGGCGGTCTTCATGTCGGCGACGCTGGCTCCGCCGCCGCATCGGGAACAAAAACCGGCAGCCGGTTTGCTCCGCCGCACCTGACGGGTCTGATCCACGAGAAAACAAAAGCAAACCATTTTTTTCCCCCTTCTAGTTGTTGGAGAGTGATAGAGAGAGGGGTGAAGAGTTTGAAGTGCATGAAATGTGTTAAAAAGTTGGAGGATGCAATGTATGTGAGTGGCGGCTTCTGA

Protein sequence

MSAIGSDNSSTKSANNGSPRPPIKWDETESSGGLHVGDAGSAAASGTKTGSRFAPPHLTGLIHEKTKANHFFPPSSCWRVIERGVKSLKCMKCVKKLEDAMYVSGGF
Homology
[Close]
BLAST of Cla97C02G027700 vs. NCBI nr
Match: BAT92511.1 (hypothetical protein VIGAN_07124600 [Vigna angularis var. angularis])

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-07
Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = 0 

Query: 2   SAIGSDNSSTKSANNGSPRPPIKWDETESSGGLHVGDAGSAAASGTKTGSRFAPPHLTGL 61
           S++  ++ STKSANN  PR  +KW+  +S    H+  AGSAAA   +   R AP HL  L
Sbjct: 8   SSVRLESGSTKSANNSFPRFGVKWNVAKSGLCHHIRHAGSAAAPRARPRRRLAPLHLPPL 67

Query: 62  IHEKTKANHFFPPSSCW-RVIERGVK---SLKCMKCVKKL 98
           IH+KT+ +HFF    CW  V+   V    SL+   C +KL
Sbjct: 68  IHQKTETHHFF----CWIEVLRCSVSLFLSLRVSSCFEKL 103

[Close]
BLAST of Cla97C02G027700 vs. TrEMBL
Match: tr|A0A0S3SI35|A0A0S3SI35_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G124600 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = 0 

Query: 2   SAIGSDNSSTKSANNGSPRPPIKWDETESSGGLHVGDAGSAAASGTKTGSRFAPPHLTGL 61
           S++  ++ STKSANN  PR  +KW+  +S    H+  AGSAAA   +   R AP HL  L
Sbjct: 8   SSVRLESGSTKSANNSFPRFGVKWNVAKSGLCHHIRHAGSAAAPRARPRRRLAPLHLPPL 67

Query: 62  IHEKTKANHFFPPSSCW-RVIERGVK---SLKCMKCVKKL 98
           IH+KT+ +HFF    CW  V+   V    SL+   C +KL
Sbjct: 68  IHQKTETHHFF----CWIEVLRCSVSLFLSLRVSSCFEKL 103

The following BLAST results are available for this feature:
BLAST of Cla97C02G027700 vs. NCBI nr
Match NameE-valueIdentityDescription
BAT92511.12.9e-0742.00hypothetical protein VIGAN_07124600 [Vigna angularis var. angularis][more]
BLAST of Cla97C02G027700 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0S3SI35|A0A0S3SI35_PHAAN1.9e-0742.00Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G... [more]
BLAST of Cla97C02G027700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C02G027700 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G027700.1Cla97C02G027700.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C02G027700Lsi11G015220Bottle gourd (USVL1VR-Ls)lsiwmbB086
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G027700Watermelon (97103) v2wmbwmbB090
Cla97C02G027700Watermelon (97103) v2wmbwmbB096
Cla97C02G027700Silver-seed gourdcarwmbB0027
Cla97C02G027700Silver-seed gourdcarwmbB0348
Cla97C02G027700Silver-seed gourdcarwmbB0752
Cla97C02G027700Silver-seed gourdcarwmbB0915
Cla97C02G027700Silver-seed gourdcarwmbB0974
Cla97C02G027700Cucumber (Gy14) v2cgybwmbB502
Cla97C02G027700Cucumber (Gy14) v1cgywmbB248
Cla97C02G027700Cucurbita maxima (Rimu)cmawmbB105
Cla97C02G027700Cucurbita maxima (Rimu)cmawmbB221
Cla97C02G027700Cucurbita maxima (Rimu)cmawmbB531
Cla97C02G027700Cucurbita maxima (Rimu)cmawmbB618
Cla97C02G027700Cucurbita maxima (Rimu)cmawmbB883
Cla97C02G027700Cucurbita moschata (Rifu)cmowmbB094
Cla97C02G027700Cucurbita moschata (Rifu)cmowmbB512
Cla97C02G027700Cucurbita moschata (Rifu)cmowmbB552
Cla97C02G027700Cucurbita moschata (Rifu)cmowmbB593
Cla97C02G027700Cucurbita moschata (Rifu)cmowmbB650
Cla97C02G027700Wild cucumber (PI 183967)cpiwmbB030
Cla97C02G027700Wild cucumber (PI 183967)cpiwmbB553
Cla97C02G027700Cucumber (Chinese Long) v3cucwmbB549
Cla97C02G027700Cucumber (Chinese Long) v2cuwmbB029
Cla97C02G027700Cucumber (Chinese Long) v2cuwmbB529
Cla97C02G027700Bottle gourd (USVL1VR-Ls)lsiwmbB060
Cla97C02G027700Melon (DHL92) v3.6.1medwmbB164
Cla97C02G027700Melon (DHL92) v3.5.1mewmbB178
Cla97C02G027700Watermelon (Charleston Gray)wcgwmbB138
Cla97C02G027700Watermelon (Charleston Gray)wcgwmbB146
Cla97C02G027700Watermelon (Charleston Gray)wcgwmbB184
Cla97C02G027700Watermelon (97103) v1wmwmbB122
Cla97C02G027700Watermelon (97103) v1wmwmbB324
Cla97C02G027700Watermelon (97103) v1wmwmbB332
Cla97C02G027700Wax gourdwgowmbB251
Cla97C02G027700Wax gourdwgowmbB365