Cla97C02G026340 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G026340
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	DNA-directed RNA polymerase subunit beta
Location	Cla97Chr02 : 131803 .. 132054 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAAGGTAGCGGGAAGACATGGAAATAAAGGTATTGTTTCAAAAATTTTGCCTAGAGAAGATATGCCTTATTTGCAAAATGGAAGACCTATTGATATGGTTTTCAATCCATTAGGAGTCCCCTCACGAATGAATGTAGGACAGATATTTGAGTGCTCACTCGGGTTAGTGGGATATACTTCTATCACAACATATATAAGTATTAGAAGTCTATCACACGTAGCAATGAACGATATGTTTTGTGGTTAA

mRNA sequence

ATGATAAAGGTAGCGGGAAGACATGGAAATAAAGGTATTGTTTCAAAAATTTTGCCTAGAGAAGATATGCCTTATTTGCAAAATGGAAGACCTATTGATATGGTTTTCAATCCATTAGGAGTCCCCTCACGAATGAATGTAGGACAGATATTTGAGTGCTCACTCGGGTTAGTGGGATATACTTCTATCACAACATATATAAGTATTAGAAGTCTATCACACGTAGCAATGAACGATATGTTTTGTGGTTAA

Coding sequence (CDS)

ATGATAAAGGTAGCGGGAAGACATGGAAATAAAGGTATTGTTTCAAAAATTTTGCCTAGAGAAGATATGCCTTATTTGCAAAATGGAAGACCTATTGATATGGTTTTCAATCCATTAGGAGTCCCCTCACGAATGAATGTAGGACAGATATTTGAGTGCTCACTCGGGTTAGTGGGATATACTTCTATCACAACATATATAAGTATTAGAAGTCTATCACACGTAGCAATGAACGATATGTTTTGTGGTTAA

Protein sequence

MIKVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVGYTSITTYISIRSLSHVAMNDMFCG

Homology

[Close]

BLAST of Cla97C02G026340 vs. NCBI nr
Match: AXR94568.1 (RNA polymerase beta subunit (chloroplast) [Hodgsonia macrocarpa] >AXR94654.1 RNA polymerase beta subunit (chloroplast) [Hodgsonia macrocarpa] >AXR94738.1 RNA polymerase beta subunit (chloroplast) [Hodgsonia macrocarpa] >AXR94823.1 RNA polymerase beta subunit (chloroplast) [Hodgsonia macrocarpa])

HSP 1 Score: 120.2 bits (300), Expect = 3.4e-24
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG 60
           KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Sbjct: 819 KVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 875

[Close]

BLAST of Cla97C02G026340 vs. NCBI nr
Match: AHM88679.1 (RNA polymerase beta subunit (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 120.2 bits (300), Expect = 3.4e-24
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG 60
           KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Sbjct: 819 KVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 875

[Close]

BLAST of Cla97C02G026340 vs. NCBI nr
Match: AHM88738.1 (RNA polymerase beta subunit (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 120.2 bits (300), Expect = 3.4e-24
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG 60
           KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Sbjct: 819 KVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 875

[Close]

BLAST of Cla97C02G026340 vs. NCBI nr
Match: AHM88796.1 (RNA polymerase beta subunit (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 120.2 bits (300), Expect = 3.4e-24
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG 60
           KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Sbjct: 819 KVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 875

[Close]

BLAST of Cla97C02G026340 vs. NCBI nr
Match: AHM88854.1 (RNA polymerase beta subunit, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 120.2 bits (300), Expect = 3.4e-24
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG 60
           KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Sbjct: 807 KVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 863

[Close]

BLAST of Cla97C02G026340 vs. TrEMBL
Match: tr|X2F838|X2F838_LAGSI (DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria OX=3668 GN=rpoB PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-24
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG 60
           KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Sbjct: 819 KVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 875

[Close]

BLAST of Cla97C02G026340 vs. TrEMBL
Match: tr|X2F6I7|X2F6I7_LAGSI (DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria OX=3668 GN=rpoB PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-24
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG 60
           KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Sbjct: 819 KVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 875

[Close]

BLAST of Cla97C02G026340 vs. TrEMBL
Match: tr|X2F2Y5|X2F2Y5_LAGSI (DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria OX=3668 GN=rpoB PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-24
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG 60
           KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Sbjct: 819 KVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 875

[Close]

BLAST of Cla97C02G026340 vs. TrEMBL
Match: tr|X2F5U4|X2F5U4_LAGSI (DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria OX=3668 GN=rpoB PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-24
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG 60
           KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Sbjct: 819 KVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 875

[Close]

BLAST of Cla97C02G026340 vs. TrEMBL
Match: tr|X2F1Y2|X2F1Y2_LAGSI (DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria OX=3668 GN=rpoB PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-24
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG 60
           KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Sbjct: 819 KVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 875

[Close]

BLAST of Cla97C02G026340 vs. Swiss-Prot
Match: sp|Q4VZP1|RPOB_CUCSA (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-26
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG 60
           KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Sbjct: 819 KVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 875

[Close]

BLAST of Cla97C02G026340 vs. Swiss-Prot
Match: sp|Q09MI6|RPOB_CITSI (DNA-directed RNA polymerase subunit beta OS=Citrus sinensis OX=2711 GN=rpoB PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 9.4e-26
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG 60
           KVAGRHGNKGIVSKILPR+DMPYLQ+GRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Sbjct: 819 KVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 875

[Close]

BLAST of Cla97C02G026340 vs. Swiss-Prot
Match: sp|Q09X25|RPOB_MORIN (DNA-directed RNA polymerase subunit beta OS=Morus indica OX=248361 GN=rpoB PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 9.4e-26
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG 60
           KVAGRHGNKGIVSKILPR+DMPYLQ+GRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Sbjct: 819 KVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 875

[Close]

BLAST of Cla97C02G026340 vs. Swiss-Prot
Match: sp|A4QJA7|RPOB_AETCO (DNA-directed RNA polymerase subunit beta OS=Aethionema cordifolium OX=434059 GN=rpoB PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-25
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG 60
           KVAGRHGNKGI+SKILPR+DMPYLQ+GRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Sbjct: 822 KVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 878

[Close]

BLAST of Cla97C02G026340 vs. Swiss-Prot
Match: sp|A4QJJ1|RPOB_AETGR (DNA-directed RNA polymerase subunit beta OS=Aethionema grandiflorum OX=72657 GN=rpoB PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-25
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG 60
           KVAGRHGNKGI+SKILPR+DMPYLQ+GRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Sbjct: 822 KVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 878

[Close]

BLAST of Cla97C02G026340 vs. TAIR10
Match: ATCG00190.1 (RNA polymerase subunit beta)

HSP 1 Score: 116.7 bits (291), Expect = 6.8e-27
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG 60
           KVAGRHGNKGI+SKILPR+DMPYLQ+GRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Sbjct: 821 KVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 877

[Close]

BLAST of Cla97C02G026340 vs. TAIR10
Match: AT4G21710.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-09
Identity = 25/56 (44.64%), Postives = 34/56 (60.71%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLV 59
           K + RHG KG V     +EDMP+   G   D++ NP  +PSRM +GQ+ EC +G V
Sbjct: 940 KFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKV 995

[Close]

BLAST of Cla97C02G026340 vs. TAIR10
Match: AT5G45140.1 (nuclear RNA polymerase C2)

HSP 1 Score: 52.4 bits (124), Expect = 1.6e-07
Identity = 22/50 (44.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFE 53
           K + RHG KG+   I+ +ED P+ + G   D++ NP G PSRM VG++ E
Sbjct: 915 KFSSRHGQKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMIE 964

[Close]

BLAST of Cla97C02G026340 vs. TAIR10
Match: AT1G29940.1 (nuclear RNA polymerase A2)

HSP 1 Score: 45.1 bits (105), Expect = 2.5e-05
Identity = 21/52 (40.38%), Postives = 31/52 (59.62%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPY--LQNGRPIDMVFNPLGVPSRMNVGQIFE 53
           K + RHG KG+ S++ P  DMP+  +   RP D++ NP   PSRM +  + E
Sbjct: 898 KFSSRHGQKGVCSQLWPDIDMPFNGVTGMRP-DLIINPHAFPSRMTIAMLLE 948

[Close]

BLAST of Cla97C02G026340 vs. TAIR10
Match: AT3G18090.1 (nuclear RNA polymerase D2B)

HSP 1 Score: 42.7 bits (99), Expect = 1.3e-04
Identity = 18/53 (33.96%), Postives = 29/53 (54.72%), Query Frame = 0


Query: 3   KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSL 56
           K +  HG KG++  +  +++ P+   G   D+V NP   PSR   GQ+ E +L
Sbjct: 795 KFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 847

The following BLAST results are available for this feature:

BLAST of Cla97C02G026340 vs. NCBI nr


Match Name	E-value	Identity	Description
AXR94568.1	3.4e-24	96.49	RNA polymerase beta subunit (chloroplast) [Hodgsonia macrocarpa] >AXR94654.1 RNA...	[more]
AHM88679.1	3.4e-24	96.49	RNA polymerase beta subunit (chloroplast) [Lagenaria siceraria]	[more]
AHM88738.1	3.4e-24	96.49	RNA polymerase beta subunit (chloroplast) [Lagenaria siceraria]	[more]
AHM88796.1	3.4e-24	96.49	RNA polymerase beta subunit (chloroplast) [Lagenaria siceraria]	[more]
AHM88854.1	3.4e-24	96.49	RNA polymerase beta subunit, partial (chloroplast) [Lagenaria siceraria]	[more]

BLAST of Cla97C02G026340 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|X2F838\|X2F838_LAGSI	2.3e-24	96.49	DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria OX=3668 GN=rpoB ...	[more]
tr\|X2F6I7\|X2F6I7_LAGSI	2.3e-24	96.49	DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria OX=3668 GN=rpoB ...	[more]
tr\|X2F2Y5\|X2F2Y5_LAGSI	2.3e-24	96.49	DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria OX=3668 GN=rpoB ...	[more]
tr\|X2F5U4\|X2F5U4_LAGSI	2.3e-24	96.49	DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria OX=3668 GN=rpoB ...	[more]
tr\|X2F1Y2\|X2F1Y2_LAGSI	2.3e-24	96.49	DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria OX=3668 GN=rpoB ...	[more]

BLAST of Cla97C02G026340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q4VZP1\|RPOB_CUCSA	1.1e-26	96.49	DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3...	[more]
sp\|Q09MI6\|RPOB_CITSI	9.4e-26	92.98	DNA-directed RNA polymerase subunit beta OS=Citrus sinensis OX=2711 GN=rpoB PE=3...	[more]
sp\|Q09X25\|RPOB_MORIN	9.4e-26	92.98	DNA-directed RNA polymerase subunit beta OS=Morus indica OX=248361 GN=rpoB PE=3 ...	[more]
sp\|A4QJA7\|RPOB_AETCO	1.2e-25	91.23	DNA-directed RNA polymerase subunit beta OS=Aethionema cordifolium OX=434059 GN=...	[more]
sp\|A4QJJ1\|RPOB_AETGR	1.2e-25	91.23	DNA-directed RNA polymerase subunit beta OS=Aethionema grandiflorum OX=72657 GN=...	[more]

BLAST of Cla97C02G026340 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00190.1	6.8e-27	91.23	RNA polymerase subunit beta	[more]
AT4G21710.1	2.2e-09	44.64	DNA-directed RNA polymerase family protein	[more]
AT5G45140.1	1.6e-07	44.00	nuclear RNA polymerase C2	[more]
AT1G29940.1	2.5e-05	40.38	nuclear RNA polymerase A2	[more]
AT3G18090.1	1.3e-04	33.96	nuclear RNA polymerase D2B	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0032549	ribonucleoside binding
GO:0003899	DNA-directed RNA polymerase activity
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR015712	DNA-dir_RNA_pol_su2
IPR007120	DNA-dir_RNAP_su2_dom
IPR037033	DNA-dir_RNAP_su2_hyb_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009536	plastid
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0032549	ribonucleoside binding
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G026340.1	Cla97C02G026340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037033	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	GENE3D	G3DSA:2.40.270.10		coord: 2..79 e-value: 1.5E-32 score: 115.1
IPR007120	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	PFAM	PF00562	RNA_pol_Rpb2_6	coord: 3..61 e-value: 1.6E-30 score: 106.4
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 3..60
None	No IPR available	PANTHER	PTHR20856:SF20	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA	coord: 3..60
None	No IPR available	SUPERFAMILY	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 3..67

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G026340	Cucumber (Gy14) v2	cgybwmbB112
Cla97C02G026340	Cucumber (Gy14) v2	cgybwmbB115
Cla97C02G026340	Cucumber (Gy14) v1	cgywmbB403
Cla97C02G026340	Cucumber (Gy14) v1	cgywmbB404
Cla97C02G026340	Cucumber (Chinese Long) v2	cuwmbB117
Cla97C02G026340	Cucurbita maxima (Rimu)	cmawmbB569
Cla97C02G026340	Cucurbita maxima (Rimu)	cmawmbB624
Cla97C02G026340	Cucurbita moschata (Rifu)	cmowmbB546
Cla97C02G026340	Cucurbita moschata (Rifu)	cmowmbB600
Cla97C02G026340	Wild cucumber (PI 183967)	cpiwmbB119
Cla97C02G026340	Wild cucumber (PI 183967)	cpiwmbB125
Cla97C02G026340	Cucumber (Chinese Long) v3	cucwmbB121
Cla97C02G026340	Cucumber (Chinese Long) v3	cucwmbB124
Cla97C02G026340	Cucumber (Chinese Long) v2	cuwmbB122
Cla97C02G026340	Bottle gourd (USVL1VR-Ls)	lsiwmbB053
Cla97C02G026340	Melon (DHL92) v3.6.1	medwmbB088
Cla97C02G026340	Melon (DHL92) v3.5.1	mewmbB093
Cla97C02G026340	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G026340	Watermelon (97103) v1	wmwmbB324
Cla97C02G026340	Wax gourd	wgowmbB372