Cla97C01G026130 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G026130
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	ycf3-interacting protein 1, chloroplastic
Location	Cla97Chr01 : 36844652 .. 36845481 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGTCATGGCTCTTCAACTCGGCTACTTCCCCCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTTCGTCAATTGAACACAATTACAAAGCTTCTCGTAGCTTCCGCCATCTTACCCTTCCCAATTATGCCCCTCGCCACCATCTTCCAGTTCCAAGTAGCCGCAATCGACGGTCTGTGGCATGCGTTGGCAAGGAAGATACCCAGTTGCGTCAATCATCGTCTACCCAAGATGAACAGCCAGACGCCCAAGACCTAGAATACGTTCGTCAGATTCAAAGGGTCTGCTGTCTCTTTCTTTTAAAGTTATCCCACTCTCTATTCTCCCTTACAATTCCTTTACAATCCAGGTCTTGGAGCTTCTCAAGAAAAACAGAGACATGCTCTTCAATGAGGTGACACCCCAGTTTCTGTTTTATACAATTTTAACTATTTCGGATCTCCGACAATATCGGTGCAATTGTCCCTCACGCTTCGTCTTGGCGTTCCGACGGAATTTAAGCAACTTTTTGTCAACTTCTTCTGCACCGCCTTTCCTTCATATTTGTCGTATCTTCTCTCTCTGGTTTCTAGTTATAGAATTTGGGGCATGGACTCAAGTCTCACATAGAACTACATTCGTTCCTCTTGAAATCAACGCATGCTTCACTGCTATATTTGTGGACACCAGTGGTTTTTTCTTTACTTTCACACCCGCCGTTGAAGTTCTCGATTACTCTAGCTCATTCTGCACTACCTTCTCTATACTCTATGCCTTCCTTTTGTCTTTTATTGTTTTAGCTTCTTCACCTCATTCCTTTCTTCATGTCGCATCTTCAATTTAG

mRNA sequence

ATGCAAGTCATGGCTCTTCAACTCGGCTACTTCCCCCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTTCGTCAATTGAACACAATTACAAAGCTTCTCGTAGCTTCCGCCATCTTACCCTTCCCAATTATGCCCCTCGCCACCATCTTCCAGTTCCAAGTAGCCGCAATCGACGGTCTGTGGCATGCGTTGGCAAGGAAGATACCCAGTTGCGTCAATCATCGTCTACCCAAGATGAACAGCCAGACGCCCAAGACCTAGAATACGTTCGTCAGATTCAAAGGGTCTTGGAGCTTCTCAAGAAAAACAGAGACATGCTCTTCAATGAGGTGACACCCCAGTTTCTGTTTTATACAATTTTAACTATTTCGGATCTCCGACAATATCGGTGCAATTGTCCCTCACGCTTCGTCTTGGCGTTCCGACGGAATTTAAGCAACTTTTTGTCAACTTCTTCTGCACCGCCTTTCCTTCATATTTGTCGTATCTTCTCTCTCTGGTTTCTAGTTATAGAATTTGGGGCATGGACTCAAGTCTCACATAGAACTACATTCGTTCCTCTTGAAATCAACGCATGCTTCACTGCTATATTTGTGGACACCAGTGGTTTTTTCTTTACTTTCACACCCGCCGTTGAAGTTCTCGATTACTCTAGCTCATTCTGCACTACCTTCTCTATACTCTATGCCTTCCTTTTGTCTTTTATTGTTTTAGCTTCTTCACCTCATTCCTTTCTTCATGTCGCATCTTCAATTTAG

Coding sequence (CDS)

ATGCAAGTCATGGCTCTTCAACTCGGCTACTTCCCCCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTTCGTCAATTGAACACAATTACAAAGCTTCTCGTAGCTTCCGCCATCTTACCCTTCCCAATTATGCCCCTCGCCACCATCTTCCAGTTCCAAGTAGCCGCAATCGACGGTCTGTGGCATGCGTTGGCAAGGAAGATACCCAGTTGCGTCAATCATCGTCTACCCAAGATGAACAGCCAGACGCCCAAGACCTAGAATACGTTCGTCAGATTCAAAGGGTCTTGGAGCTTCTCAAGAAAAACAGAGACATGCTCTTCAATGAGGTGACACCCCAGTTTCTGTTTTATACAATTTTAACTATTTCGGATCTCCGACAATATCGGTGCAATTGTCCCTCACGCTTCGTCTTGGCGTTCCGACGGAATTTAAGCAACTTTTTGTCAACTTCTTCTGCACCGCCTTTCCTTCATATTTGTCGTATCTTCTCTCTCTGGTTTCTAGTTATAGAATTTGGGGCATGGACTCAAGTCTCACATAGAACTACATTCGTTCCTCTTGAAATCAACGCATGCTTCACTGCTATATTTGTGGACACCAGTGGTTTTTTCTTTACTTTCACACCCGCCGTTGAAGTTCTCGATTACTCTAGCTCATTCTGCACTACCTTCTCTATACTCTATGCCTTCCTTTTGTCTTTTATTGTTTTAGCTTCTTCACCTCATTCCTTTCTTCATGTCGCATCTTCAATTTAG

Protein sequence

MQVMALQLGYFPPSPSPSPSPSPSSSIEHNYKASRSFRHLTLPNYAPRHHLPVPSSRNRRSVACVGKEDTQLRQSSSTQDEQPDAQDLEYVRQIQRVLELLKKNRDMLFNEVTPQFLFYTILTISDLRQYRCNCPSRFVLAFRRNLSNFLSTSSAPPFLHICRIFSLWFLVIEFGAWTQVSHRTTFVPLEINACFTAIFVDTSGFFFTFTPAVEVLDYSSSFCTTFSILYAFLLSFIVLASSPHSFLHVASSI

Homology

[Close]

BLAST of Cla97C01G026130 vs. NCBI nr
Match: XP_022925592.1 (ycf3-interacting protein 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 154.8 bits (390), Expect = 3.8e-34
Identity = 83/112 (74.11%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 1   MQVMALQLGYFPPXXXXXXXXXXXXXXXHNYKASRSFRHLTLPNYAPRHHLPVPSSRNRR 60
           M+VMALQL +FP                HNYKASR FRHL LPNYA RHHLPV SSRNRR
Sbjct: 1   MEVMALQLRHFP-------LSPSPSSIKHNYKASRCFRHLPLPNYASRHHLPVSSSRNRR 60

Query: 61  SVACVGKEDTQLRQSSSTQDEQPDAQDLEYVRQIQRVLELLKKNRDMLFNEV 113
            V CVGKE+TQL QSSST+DEQPDAQDLEY+RQIQRVLELLKKNRDMLFNEV
Sbjct: 61  VVGCVGKENTQLSQSSSTEDEQPDAQDLEYIRQIQRVLELLKKNRDMLFNEV 105

[Close]

BLAST of Cla97C01G026130 vs. NCBI nr
Match: XP_023544733.1 (protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.1 bits (383), Expect = 2.5e-33
Identity = 82/112 (73.21%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 1   MQVMALQLGYFPPXXXXXXXXXXXXXXXHNYKASRSFRHLTLPNYAPRHHLPVPSSRNRR 60
           M+VMALQL +FP                HNYKASR FRHL  PNYA RHHLPV SSRNRR
Sbjct: 1   MEVMALQLHHFP-------LSPSPSSIKHNYKASRCFRHLPHPNYASRHHLPVSSSRNRR 60

Query: 61  SVACVGKEDTQLRQSSSTQDEQPDAQDLEYVRQIQRVLELLKKNRDMLFNEV 113
            V CVGKE+TQL QSSST+DEQPDAQDLEY+RQIQRVLELLKKNRDMLFNEV
Sbjct: 61  VVGCVGKENTQLSQSSSTEDEQPDAQDLEYIRQIQRVLELLKKNRDMLFNEV 105

[Close]

BLAST of Cla97C01G026130 vs. NCBI nr
Match: XP_023544732.1 (ycf3-interacting protein 1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.1 bits (383), Expect = 2.5e-33
Identity = 82/112 (73.21%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 1   MQVMALQLGYFPPXXXXXXXXXXXXXXXHNYKASRSFRHLTLPNYAPRHHLPVPSSRNRR 60
           M+VMALQL +FP                HNYKASR FRHL  PNYA RHHLPV SSRNRR
Sbjct: 1   MEVMALQLHHFP-------LSPSPSSIKHNYKASRCFRHLPHPNYASRHHLPVSSSRNRR 60

Query: 61  SVACVGKEDTQLRQSSSTQDEQPDAQDLEYVRQIQRVLELLKKNRDMLFNEV 113
            V CVGKE+TQL QSSST+DEQPDAQDLEY+RQIQRVLELLKKNRDMLFNEV
Sbjct: 61  VVGCVGKENTQLSQSSSTEDEQPDAQDLEYIRQIQRVLELLKKNRDMLFNEV 105

[Close]

BLAST of Cla97C01G026130 vs. NCBI nr
Match: XP_022977224.1 (ycf3-interacting protein 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 150.6 bits (379), Expect = 7.2e-33
Identity = 82/112 (73.21%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 1   MQVMALQLGYFPPXXXXXXXXXXXXXXXHNYKASRSFRHLTLPNYAPRHHLPVPSSRNRR 60
           M+VMALQL +FP                HNYKASR FRHL LPNYA RHHLPV SSRNR 
Sbjct: 1   MEVMALQLRHFP-------LSPSPSSIKHNYKASRCFRHLPLPNYASRHHLPVSSSRNRW 60

Query: 61  SVACVGKEDTQLRQSSSTQDEQPDAQDLEYVRQIQRVLELLKKNRDMLFNEV 113
            V CVGKEDTQL QSSST+ EQPDAQDLEY+RQIQRVLELLKKNRDMLFNEV
Sbjct: 61  VVGCVGKEDTQLSQSSSTEAEQPDAQDLEYIRQIQRVLELLKKNRDMLFNEV 105

[Close]

BLAST of Cla97C01G026130 vs. NCBI nr
Match: XP_004134512.1 (PREDICTED: uncharacterized protein LOC101220256 [Cucumis sativus] >KGN49548.1 hypothetical protein Csa_6G538770 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-30
Identity = 78/112 (69.64%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 1   MQVMALQLGYFPPXXXXXXXXXXXXXXXHNYKASRSFRHLTLPNYAPRHHLPVPSSRNRR 60
           M VMALQL +FP                HNY  SR FR+L LP++  R HLPVPSSRNRR
Sbjct: 1   MAVMALQLRHFP------LSTSPSSSIEHNYDISRRFRYLPLPSHGTRPHLPVPSSRNRR 60

Query: 61  SVACVGKEDTQLRQSSSTQDEQPDAQDLEYVRQIQRVLELLKKNRDMLFNEV 113
           S+ACVGKEDTQLRQ SST DEQP+AQDLEY+RQIQRVLELLKKNRDMLFNEV
Sbjct: 61  SLACVGKEDTQLRQPSSTTDEQPEAQDLEYIRQIQRVLELLKKNRDMLFNEV 106

[Close]

BLAST of Cla97C01G026130 vs. TrEMBL
Match: tr|A0A0A0KJ48|A0A0A0KJ48_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G538770 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 7.6e-31
Identity = 78/112 (69.64%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 1   MQVMALQLGYFPPXXXXXXXXXXXXXXXHNYKASRSFRHLTLPNYAPRHHLPVPSSRNRR 60
           M VMALQL +FP                HNY  SR FR+L LP++  R HLPVPSSRNRR
Sbjct: 1   MAVMALQLRHFP------LSTSPSSSIEHNYDISRRFRYLPLPSHGTRPHLPVPSSRNRR 60

Query: 61  SVACVGKEDTQLRQSSSTQDEQPDAQDLEYVRQIQRVLELLKKNRDMLFNEV 113
           S+ACVGKEDTQLRQ SST DEQP+AQDLEY+RQIQRVLELLKKNRDMLFNEV
Sbjct: 61  SLACVGKEDTQLRQPSSTTDEQPEAQDLEYIRQIQRVLELLKKNRDMLFNEV 106

[Close]

BLAST of Cla97C01G026130 vs. TrEMBL
Match: tr|A0A1S3AYB4|A0A1S3AYB4_CUCME (ycf3-interacting protein 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484231 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.3e-27
Identity = 73/112 (65.18%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 1   MQVMALQLGYFPPXXXXXXXXXXXXXXXHNYKASRSFRHLTLPNYAPRHHLPVPSSRNRR 60
           M VMALQL +F                 HNY+  R FR L LP++ P H L VPSSRNRR
Sbjct: 1   MAVMALQLRHF------SLSPSPSSSIEHNYEVYRRFRQLPLPSHGPHHRLLVPSSRNRR 60

Query: 61  SVACVGKEDTQLRQSSSTQDEQPDAQDLEYVRQIQRVLELLKKNRDMLFNEV 113
           S+ACVGKEDTQ RQSSST DEQPDAQ LEY+ QI+RVLELLKKNRDMLFNEV
Sbjct: 61  SLACVGKEDTQFRQSSSTTDEQPDAQALEYIHQIRRVLELLKKNRDMLFNEV 106

[Close]

BLAST of Cla97C01G026130 vs. TrEMBL
Match: tr|A0A1S3AYR1|A0A1S3AYR1_CUCME (ycf3-interacting protein 1, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484231 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.3e-27
Identity = 73/112 (65.18%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 1   MQVMALQLGYFPPXXXXXXXXXXXXXXXHNYKASRSFRHLTLPNYAPRHHLPVPSSRNRR 60
           M VMALQL +F                 HNY+  R FR L LP++ P H L VPSSRNRR
Sbjct: 1   MAVMALQLRHF------SLSPSPSSSIEHNYEVYRRFRQLPLPSHGPHHRLLVPSSRNRR 60

Query: 61  SVACVGKEDTQLRQSSSTQDEQPDAQDLEYVRQIQRVLELLKKNRDMLFNEV 113
           S+ACVGKEDTQ RQSSST DEQPDAQ LEY+ QI+RVLELLKKNRDMLFNEV
Sbjct: 61  SLACVGKEDTQFRQSSSTTDEQPDAQALEYIHQIRRVLELLKKNRDMLFNEV 106

[Close]

BLAST of Cla97C01G026130 vs. TrEMBL
Match: tr|D7SMS4|D7SMS4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0089g01390 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.4e-07
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 60  RSVACVGKEDTQLRQSSSTQDEQPDAQDLEYVRQIQRVLELLKKNRDMLFNEV 113
           R +  VGKE+T+LR SS  Q E P  +DLEYV QIQRVLELL+KNRDM+F+EV
Sbjct: 55  RGLVFVGKEETELRVSSD-QQEDPSPEDLEYVSQIQRVLELLRKNRDMIFSEV 106

[Close]

BLAST of Cla97C01G026130 vs. TrEMBL
Match: tr|A0A2R6QAN3|A0A2R6QAN3_ACTCH (Ycf3-interacting protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc20821 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.8e-07
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 47  PRHHLPVP---SSRNRR--SVACVGKEDTQLRQSSSTQDEQPDAQDLEYVRQIQRVLELL 106
           P   LPV     +R RR   +  VGKE+TQLR +S+  D+ P  QDLEYV QI+RVLELL
Sbjct: 43  PALSLPVHRHCQNRRRRINGLVFVGKEETQLRVASTESDDDPSPQDLEYVSQIKRVLELL 102

Query: 107 KKNRDMLFNEV 113
           + NRDM+F+EV
Sbjct: 103 RTNRDMVFSEV 113

[Close]

BLAST of Cla97C01G026130 vs. TAIR10
Match: AT5G44650.1 (Encodes a nucleus-encoded thylakoid protein, cooperates with the plastid-encoded Ycf3 protein in photosystem i assembly. Also induces tolerance to multiple environmental stresses and reduces photooxidative damage.)

HSP 1 Score: 43.1 bits (100), Expect = 2.9e-04
Identity = 18/29 (62.07%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 84  DAQDLEYVRQIQRVLELLKKNRDMLFNEV 113
           D +DL+YV +I+RV+ELL++NRDM+F+EV
Sbjct: 103 DPEDLKYVNEIKRVIELLRRNRDMIFSEV 131

The following BLAST results are available for this feature:

BLAST of Cla97C01G026130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925592.1	3.8e-34	74.11	ycf3-interacting protein 1, chloroplastic [Cucurbita moschata]	[more]
XP_023544733.1	2.5e-33	73.21	protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic isoform X2 [Cucurb...	[more]
XP_023544732.1	2.5e-33	73.21	ycf3-interacting protein 1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo...	[more]
XP_022977224.1	7.2e-33	73.21	ycf3-interacting protein 1, chloroplastic [Cucurbita maxima]	[more]
XP_004134512.1	1.1e-30	69.64	PREDICTED: uncharacterized protein LOC101220256 [Cucumis sativus] >KGN49548.1 hy...	[more]

BLAST of Cla97C01G026130 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KJ48\|A0A0A0KJ48_CUCSA	7.6e-31	69.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G538770 PE=4 SV=1	[more]
tr\|A0A1S3AYB4\|A0A1S3AYB4_CUCME	2.3e-27	65.18	ycf3-interacting protein 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A1S3AYR1\|A0A1S3AYR1_CUCME	2.3e-27	65.18	ycf3-interacting protein 1, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=...	[more]
tr\|D7SMS4\|D7SMS4_VITVI	3.4e-07	66.04	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0089g01390 PE=4 SV=...	[more]
tr\|A0A2R6QAN3\|A0A2R6QAN3_ACTCH	5.8e-07	54.93	Ycf3-interacting protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY...	[more]

BLAST of Cla97C01G026130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G026130 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G44650.1	2.9e-04	62.07	Encodes a nucleus-encoded thylakoid protein, cooperates with the plastid-encoded...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G026130.1	Cla97C01G026130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 91..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..84
None	No IPR available	PANTHER	PTHR33672	FAMILY NOT NAMED	coord: 18..112
None	No IPR available	PANTHER	PTHR33672:SF3	YCF3-INTERACTING PROTEIN 1, CHLOROPLASTIC	coord: 18..112

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G026130	Silver-seed gourd	carwmbB0764
Cla97C01G026130	Cucumber (Gy14) v2	cgybwmbB394
Cla97C01G026130	Cucumber (Gy14) v1	cgywmbB017
Cla97C01G026130	Cucurbita maxima (Rimu)	cmawmbB875
Cla97C01G026130	Cucurbita moschata (Rifu)	cmowmbB849
Cla97C01G026130	Wild cucumber (PI 183967)	cpiwmbB433
Cla97C01G026130	Cucumber (Chinese Long) v3	cucwmbB430
Cla97C01G026130	Cucumber (Chinese Long) v2	cuwmbB412
Cla97C01G026130	Bottle gourd (USVL1VR-Ls)	lsiwmbB115
Cla97C01G026130	Melon (DHL92) v3.6.1	medwmbB507
Cla97C01G026130	Melon (DHL92) v3.5.1	mewmbB515
Cla97C01G026130	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G026130	Watermelon (97103) v1	wmwmbB234
Cla97C01G026130	Wax gourd	wgowmbB107