Cla97C01G025880 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G025880
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Alpha 1,4-glycosyltransferase family protein, putative isoform 1
Location	Cla97Chr01 : 36680723 .. 36681230 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCGGAACCTTCAGACACGTCGTCGCGGTTCCTATGGCGCCTACTTCTGCGCCTTCGCCGCCGCCTCGCTGCTTCTATTTTCAGTCTCCCTCCTCTACACTCGCCTCTCTCGCTCTCAGTCACACACTTACTCTCCTCACATGTATCCTAAATCCCTAGGCAACATTCTTGTCTCTGATTCAGATGACGACAGCGATATTGTTTTGGGCACTACTACCACCGACGAGGACAAGATTGATGAGCTCGATTTTGTGGATGAGGACCTCCAATCTAGGGCATCTGGCGATGAGGATCTGGGAGAGGATGAAGATCAATCTGATCAGGTCAGGGTTTCTGGATTTTATTTTGACCATGTTAGTGGGGCTATTAGGAAGGTTTTTGATAACAAACGTTCCATCCAAGATTGGTCTGATGACACTTCTGGTTTTCCTATCGGATTAGGTGAAGAGGATCGCAGTAAAGCTGCGTTTGGCTCTGATGATGTGCCGGTTGACGAAGAGGTGA

mRNA sequence

ATGCTGCGGAACCTTCAGACACGTCGTCGCGGTTCCTATGGCGCCTACTTCTGCGCCTTCGCCGCCGCCTCGCTGCTTCTATTTTCAGTCTCCCTCCTCTACACTCGCCTCTCTCGCTCTCAGTCACACACTTACTCTCCTCACATGTATCCTAAATCCCTAGGCAACATTCTTGTCTCTGATTCAGATGACGACAGCGATATTGTTTTGGGCACTACTACCACCGACGAGGACAAGATTGATGAGCTCGATTTTGTGGATGAGGACCTCCAATCTAGGGCATCTGGCGATGAGGATCTGGGAGAGGATGAAGATCAATCTGATCAGGTGAAGAGGATCGCAGTAAAGCTGCGTTTGGCTCTGATGATGTGCCGGTTGACGAAGAGGTGA

Coding sequence (CDS)

ATGCTGCGGAACCTTCAGACACGTCGTCGCGGTTCCTATGGCGCCTACTTCTGCGCCTTCGCCGCCGCCTCGCTGCTTCTATTTTCAGTCTCCCTCCTCTACACTCGCCTCTCTCGCTCTCAGTCACACACTTACTCTCCTCACATGTATCCTAAATCCCTAGGCAACATTCTTGTCTCTGATTCAGATGACGACAGCGATATTGTTTTGGGCACTACTACCACCGACGAGGACAAGATTGATGAGCTCGATTTTGTGGATGAGGACCTCCAATCTAGGGCATCTGGCGATGAGGATCTGGGAGAGGATGAAGATCAATCTGATCAGGTGAAGAGGATCGCAGTAAAGCTGCGTTTGGCTCTGATGATGTGCCGGTTGACGAAGAGGTGA

Protein sequence

MLRNLQTRRRGSYGAYFCAFAAASLLLFSVSLLYTRLSRSQSHTYSPHMYPKSLGNILVSDSDDDSDIVLGTTTTDEDKIDELDFVDEDLQSRASGDEDLGEDEDQSDQVKRIAVKLRLALMMCRLTKR

Homology

[Close]

BLAST of Cla97C01G025880 vs. NCBI nr
Match: XP_011658360.1 (PREDICTED: uncharacterized protein At4g19900 [Cucumis sativus] >KGN49526.1 hypothetical protein Csa_6G532080 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 5.3e-48
Identity = 106/111 (95.50%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 1   MLRNLQTRRRGSYGAYFCAFAAASLLLFSVSLLYTRLSRSQSHTYSPHMYPKSLGNILVS 60
           MLRNL TRRRGSYGA FCAFAAA LLLFSVSLLYTRLSRSQSHT+SPHMYPKSLGNILVS
Sbjct: 1   MLRNLHTRRRGSYGACFCAFAAALLLLFSVSLLYTRLSRSQSHTHSPHMYPKSLGNILVS 60

Query: 61  DSDDDSDIVLGTTTTDEDKIDELDFVDEDLQSRASGDEDLGEDEDQSDQVK 112
           DSDDDSDIVLGTTTTDEDKIDELDFVDEDLQSRASGDEDLGEDEDQSDQV+
Sbjct: 61  DSDDDSDIVLGTTTTDEDKIDELDFVDEDLQSRASGDEDLGEDEDQSDQVR 111

[Close]

BLAST of Cla97C01G025880 vs. NCBI nr
Match: XP_008439459.1 (PREDICTED: uncharacterized protein At4g19900 [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 1.5e-47
Identity = 106/111 (95.50%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 1   MLRNLQTRRRGSYGAYFCAFAAASLLLFSVSLLYTRLSRSQSHTYSPHMYPKSLGNILVS 60
           MLRNL TRRRGSYGA FCAFAAA LLLFSVSLLYTRLSRSQSHTYS HMYPKSLGNILVS
Sbjct: 1   MLRNLHTRRRGSYGACFCAFAAALLLLFSVSLLYTRLSRSQSHTYSHHMYPKSLGNILVS 60

Query: 61  DSDDDSDIVLGTTTTDEDKIDELDFVDEDLQSRASGDEDLGEDEDQSDQVK 112
           DSDDDSDIVLGTTTTDEDKIDELDFVDEDLQSRASGDEDLGEDEDQSDQV+
Sbjct: 61  DSDDDSDIVLGTTTTDEDKIDELDFVDEDLQSRASGDEDLGEDEDQSDQVR 111

[Close]

BLAST of Cla97C01G025880 vs. NCBI nr
Match: XP_022977449.1 (uncharacterized protein At4g19900 isoform X1 [Cucurbita maxima])

HSP 1 Score: 191.0 bits (484), Expect = 2.4e-45
Identity = 100/111 (90.09%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 1   MLRNLQTRRRGSYGAYFCAFAAASLLLFSVSLLYTRLSRSQSHTYSPHMYPKSLGNILVS 60
           MLRNLQTRRRG YGAYFCAFAAASLLLFSVSLLYTRLSRSQSHTYS  M+PKSLGNILVS
Sbjct: 1   MLRNLQTRRRGPYGAYFCAFAAASLLLFSVSLLYTRLSRSQSHTYSRPMFPKSLGNILVS 60

Query: 61  DSDDDSDIVLGTTTTDEDKIDELDFVDEDLQSRASGDEDLGEDEDQSDQVK 112
           DSDDDSD++LGTT TDEDKIDELD VDED+QSRASGDE+LGEDEDQSDQV+
Sbjct: 61  DSDDDSDVILGTTATDEDKIDELDIVDEDVQSRASGDEELGEDEDQSDQVR 111

[Close]

BLAST of Cla97C01G025880 vs. NCBI nr
Match: XP_022977450.1 (uncharacterized protein At4g19900 isoform X2 [Cucurbita maxima])

HSP 1 Score: 191.0 bits (484), Expect = 2.4e-45
Identity = 100/111 (90.09%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 1   MLRNLQTRRRGSYGAYFCAFAAASLLLFSVSLLYTRLSRSQSHTYSPHMYPKSLGNILVS 60
           MLRNLQTRRRG YGAYFCAFAAASLLLFSVSLLYTRLSRSQSHTYS  M+PKSLGNILVS
Sbjct: 1   MLRNLQTRRRGPYGAYFCAFAAASLLLFSVSLLYTRLSRSQSHTYSRPMFPKSLGNILVS 60

Query: 61  DSDDDSDIVLGTTTTDEDKIDELDFVDEDLQSRASGDEDLGEDEDQSDQVK 112
           DSDDDSD++LGTT TDEDKIDELD VDED+QSRASGDE+LGEDEDQSDQV+
Sbjct: 61  DSDDDSDVILGTTATDEDKIDELDIVDEDVQSRASGDEELGEDEDQSDQVR 111

[Close]

BLAST of Cla97C01G025880 vs. NCBI nr
Match: XP_022977451.1 (uncharacterized protein At4g19900 isoform X3 [Cucurbita maxima])

HSP 1 Score: 191.0 bits (484), Expect = 2.4e-45
Identity = 100/111 (90.09%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 1   MLRNLQTRRRGSYGAYFCAFAAASLLLFSVSLLYTRLSRSQSHTYSPHMYPKSLGNILVS 60
           MLRNLQTRRRG YGAYFCAFAAASLLLFSVSLLYTRLSRSQSHTYS  M+PKSLGNILVS
Sbjct: 1   MLRNLQTRRRGPYGAYFCAFAAASLLLFSVSLLYTRLSRSQSHTYSRPMFPKSLGNILVS 60

Query: 61  DSDDDSDIVLGTTTTDEDKIDELDFVDEDLQSRASGDEDLGEDEDQSDQVK 112
           DSDDDSD++LGTT TDEDKIDELD VDED+QSRASGDE+LGEDEDQSDQV+
Sbjct: 61  DSDDDSDVILGTTATDEDKIDELDIVDEDVQSRASGDEELGEDEDQSDQVR 111

[Close]

BLAST of Cla97C01G025880 vs. TrEMBL
Match: tr|A0A0A0KPC9|A0A0A0KPC9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G532080 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.5e-48
Identity = 106/111 (95.50%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 1   MLRNLQTRRRGSYGAYFCAFAAASLLLFSVSLLYTRLSRSQSHTYSPHMYPKSLGNILVS 60
           MLRNL TRRRGSYGA FCAFAAA LLLFSVSLLYTRLSRSQSHT+SPHMYPKSLGNILVS
Sbjct: 1   MLRNLHTRRRGSYGACFCAFAAALLLLFSVSLLYTRLSRSQSHTHSPHMYPKSLGNILVS 60

Query: 61  DSDDDSDIVLGTTTTDEDKIDELDFVDEDLQSRASGDEDLGEDEDQSDQVK 112
           DSDDDSDIVLGTTTTDEDKIDELDFVDEDLQSRASGDEDLGEDEDQSDQV+
Sbjct: 61  DSDDDSDIVLGTTTTDEDKIDELDFVDEDLQSRASGDEDLGEDEDQSDQVR 111

[Close]

BLAST of Cla97C01G025880 vs. TrEMBL
Match: tr|A0A1S3AZG3|A0A1S3AZG3_CUCME (uncharacterized protein At4g19900 OS=Cucumis melo OX=3656 GN=LOC103484255 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.0e-47
Identity = 106/111 (95.50%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 1   MLRNLQTRRRGSYGAYFCAFAAASLLLFSVSLLYTRLSRSQSHTYSPHMYPKSLGNILVS 60
           MLRNL TRRRGSYGA FCAFAAA LLLFSVSLLYTRLSRSQSHTYS HMYPKSLGNILVS
Sbjct: 1   MLRNLHTRRRGSYGACFCAFAAALLLLFSVSLLYTRLSRSQSHTYSHHMYPKSLGNILVS 60

Query: 61  DSDDDSDIVLGTTTTDEDKIDELDFVDEDLQSRASGDEDLGEDEDQSDQVK 112
           DSDDDSDIVLGTTTTDEDKIDELDFVDEDLQSRASGDEDLGEDEDQSDQV+
Sbjct: 61  DSDDDSDIVLGTTTTDEDKIDELDFVDEDLQSRASGDEDLGEDEDQSDQVR 111

[Close]

BLAST of Cla97C01G025880 vs. TrEMBL
Match: tr|A0A2I4GBK8|A0A2I4GBK8_9ROSI (uncharacterized protein At4g19900-like OS=Juglans regia OX=51240 GN=LOC109006455 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.4e-09
Identity = 44/86 (51.16%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 1  MLRNLQTRRRGSYGAYFCAFAAASLLLFSVSLLYTRLSRSQSHTYSPHMYPKSLGNILVS 60
          MLRNL+TRRR  YGA+ CA  +A LLL SVSLL++RLS S+S       +P S  +I V 
Sbjct: 1  MLRNLRTRRRPRYGAHICAVISALLLLLSVSLLHSRLSHSRSQPDHRRYFPDSQNDIDVD 60

Query: 61 DSDDDSDIVLGTTTTDEDKIDELDFV 87
               +D       T EDKIDELDFV
Sbjct: 61 SDPLVADTQEDGVATSEDKIDELDFV 86

[Close]

BLAST of Cla97C01G025880 vs. TrEMBL
Match: tr|A0A2I4DWL9|A0A2I4DWL9_9ROSI (uncharacterized protein At4g19900-like isoform X2 OS=Juglans regia OX=51240 GN=LOC108984147 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-08
Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 1  MLRNLQTRRRGSYGAYFCAFAAASLLLFSVSLLYTRLSRSQSHTYSPHMYPKSLGNI--- 60
          MLRNL+ RRR  YG   CA  +A LLL SVSLLY+ LS +QSH Y  H Y +S  +I   
Sbjct: 1  MLRNLRIRRRPRYGVQVCAVISALLLLLSVSLLYSSLSHTQSHPYRNHFYTRSQNDIDST 60

Query: 61 -LVSDSDDDSDIVLGTTTTDEDKIDELD 85
           ++SDS  +        +T EDK+DELD
Sbjct: 61 PILSDSQHEG------VSTSEDKVDELD 82

[Close]

BLAST of Cla97C01G025880 vs. TrEMBL
Match: tr|A0A2I4DWM0|A0A2I4DWM0_9ROSI (uncharacterized protein At4g19900-like isoform X1 OS=Juglans regia OX=51240 GN=LOC108984147 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-08
Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 1  MLRNLQTRRRGSYGAYFCAFAAASLLLFSVSLLYTRLSRSQSHTYSPHMYPKSLGNI--- 60
          MLRNL+ RRR  YG   CA  +A LLL SVSLLY+ LS +QSH Y  H Y +S  +I   
Sbjct: 1  MLRNLRIRRRPRYGVQVCAVISALLLLLSVSLLYSSLSHTQSHPYRNHFYTRSQNDIDST 60

Query: 61 -LVSDSDDDSDIVLGTTTTDEDKIDELD 85
           ++SDS  +        +T EDK+DELD
Sbjct: 61 PILSDSQHEG------VSTSEDKVDELD 82

[Close]

BLAST of Cla97C01G025880 vs. TAIR10
Match: AT4G19900.1 (alpha 1,4-glycosyltransferase family protein)

HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04
Identity = 43/102 (42.16%), Postives = 56/102 (54.90%), Query Frame = 0


Query: 1  MLRNLQTRRRGSYGAYFCAFAAASLLLFSVSLLYTRLSRSQSHTYSPH-----------M 60
          MLR+ ++R R  +GA  CA  +A LLL SVSLLYTRLS   SH  SP+           +
Sbjct: 1  MLRSRRSRSR--HGAQACAVMSAVLLLASVSLLYTRLSLFSSH--SPNHLRSGSSEDTVL 60

Query: 61 YPKSLGNILVSDSDDDS--DIVLGTTTTDEDKIDELDFVDED 90
          +P S   +LVSDSD ++          + ED+IDE D   ED
Sbjct: 61 FPDS---VLVSDSDVETTGXXXXXXXXSTEDRIDEHDDAIED 95

The following BLAST results are available for this feature:

BLAST of Cla97C01G025880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658360.1	5.3e-48	95.50	PREDICTED: uncharacterized protein At4g19900 [Cucumis sativus] >KGN49526.1 hypot...	[more]
XP_008439459.1	1.5e-47	95.50	PREDICTED: uncharacterized protein At4g19900 [Cucumis melo]	[more]
XP_022977449.1	2.4e-45	90.09	uncharacterized protein At4g19900 isoform X1 [Cucurbita maxima]	[more]
XP_022977450.1	2.4e-45	90.09	uncharacterized protein At4g19900 isoform X2 [Cucurbita maxima]	[more]
XP_022977451.1	2.4e-45	90.09	uncharacterized protein At4g19900 isoform X3 [Cucurbita maxima]	[more]

BLAST of Cla97C01G025880 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPC9\|A0A0A0KPC9_CUCSA	3.5e-48	95.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G532080 PE=4 SV=1	[more]
tr\|A0A1S3AZG3\|A0A1S3AZG3_CUCME	1.0e-47	95.50	uncharacterized protein At4g19900 OS=Cucumis melo OX=3656 GN=LOC103484255 PE=4 S...	[more]
tr\|A0A2I4GBK8\|A0A2I4GBK8_9ROSI	5.4e-09	51.16	uncharacterized protein At4g19900-like OS=Juglans regia OX=51240 GN=LOC109006455...	[more]
tr\|A0A2I4DWL9\|A0A2I4DWL9_9ROSI	1.2e-08	48.86	uncharacterized protein At4g19900-like isoform X2 OS=Juglans regia OX=51240 GN=L...	[more]
tr\|A0A2I4DWM0\|A0A2I4DWM0_9ROSI	1.2e-08	48.86	uncharacterized protein At4g19900-like isoform X1 OS=Juglans regia OX=51240 GN=L...	[more]

BLAST of Cla97C01G025880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G025880 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19900.1	1.9e-04	42.16	alpha 1,4-glycosyltransferase family protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
biological_process	GO:0009411	response to UV
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0042575	DNA polymerase complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G025880.1	Cla97C01G025880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 128..129

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G025880	Cla009889	Watermelon (97103) v1	wmwmbB234
Cla97C01G025880	Csa6G532080	Cucumber (Chinese Long) v2	cuwmbB412
Cla97C01G025880	MELO3C007013	Melon (DHL92) v3.5.1	mewmbB515
Cla97C01G025880	ClCG01G025720	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G025880	CSPI06G37490	Wild cucumber (PI 183967)	cpiwmbB433
Cla97C01G025880	Cucsa.048850	Cucumber (Gy14) v1	cgywmbB017
Cla97C01G025880	CmaCh03G015000	Cucurbita maxima (Rimu)	cmawmbB667
Cla97C01G025880	CmoCh03G015000	Cucurbita moschata (Rifu)	cmowmbB639
Cla97C01G025880	Lsi01G000230	Bottle gourd (USVL1VR-Ls)	lsiwmbB115
Cla97C01G025880	CsGy6G036870	Cucumber (Gy14) v2	cgybwmbB394
Cla97C01G025880	MELO3C007013.2	Melon (DHL92) v3.6.1	medwmbB507
Cla97C01G025880	Carg24618	Silver-seed gourd	carwmbB1128
Cla97C01G025880	CsaV3_6G052960	Cucumber (Chinese Long) v3	cucwmbB430
Cla97C01G025880	Bhi03G000215	Wax gourd	wgowmbB396

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G025880	Silver-seed gourd	carwmbB0764
Cla97C01G025880	Cucurbita maxima (Rimu)	cmawmbB875
Cla97C01G025880	Cucurbita moschata (Rifu)	cmowmbB849