Cla97C01G024970 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G024970
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	F-box family protein
Location	Cla97Chr01 : 35960298 .. 35960597 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGTGACGTCGAGGCCATTGCCATTGCTGAATCTATGCCTAATTTACGTCACCTTCAAATGTTGGGCAATGACCTAACTGAGATTGGCTTGCAGGCCATTCTTGATAGTTGTCTTGATTTAGAATCTCTCGACTTACGCCGATGTTTCAAGTAAGTTTTGCTGGCGGAACAGTTGAGACAAAAATGTGCTGGAAGGATCAAAATTTTTCATCTGCCTCATGAACCCGCCGATGGCTATGACAGCAAAACTAGCGATGCTAGTGTTTATGAAGATTATTGGGATCATAATGTCTAG

mRNA sequence

ATGGGTTGTGACGTCGAGGCCATTGCCATTGCTGAATCTATGCCTAATTTACGTCACCTTCAAATGTTGGGCAATGACCTAACTGAGATTGGCTTGCAGGCCATTCTTGATAGTTGTCTTGATTTAGAATCTCTCGACTTACGCCGATGTTTCAACAAAACTAGCGATGCTAGTGTTTATGAAGATTATTGGGATCATAATGTCTAG

Coding sequence (CDS)

ATGGGTTGTGACGTCGAGGCCATTGCCATTGCTGAATCTATGCCTAATTTACGTCACCTTCAAATGTTGGGCAATGACCTAACTGAGATTGGCTTGCAGGCCATTCTTGATAGTTGTCTTGATTTAGAATCTCTCGACTTACGCCGATGTTTCAACAAAACTAGCGATGCTAGTGTTTATGAAGATTATTGGGATCATAATGTCTAG

Protein sequence

MGCDVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFNKTSDASVYEDYWDHNV

Homology

[Close]

BLAST of Cla97C01G024970 vs. NCBI nr
Match: XP_008439579.1 (PREDICTED: putative F-box/LRR-repeat protein 9 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 8.4e-13
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MGCDVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFN 53
           M CD EAIAIA++MP LRHLQ+LGN L++ GLQAILD C DLESLDLR+CFN
Sbjct: 170 MVCDREAIAIAKTMPKLRHLQILGNALSDKGLQAILDGCTDLESLDLRQCFN 221

[Close]

BLAST of Cla97C01G024970 vs. NCBI nr
Match: XP_011029536.1 (PREDICTED: F-box protein SKIP19-like [Populus euphratica])

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 3   CDVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFN 53
           CD EA+A+AESMP LRHL+M GN LT  GLQAILD+CL LESLDLR+CFN
Sbjct: 194 CDDEALAVAESMPGLRHLEMFGNKLTNDGLQAILDACLYLESLDLRQCFN 243

[Close]

BLAST of Cla97C01G024970 vs. NCBI nr
Match: XP_023892804.1 (F-box protein SKIP19-like [Quercus suber] >POF21462.1 f-box protein skip19 [Quercus suber])

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-12
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 3   CDVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFNKT 55
           CD EA+AIA++MP LRHLQ++GN LT  GLQAILD+C  LESLDLR+CFN T
Sbjct: 228 CDEEAVAIAKNMPKLRHLQLIGNRLTNDGLQAILDNCPHLESLDLRKCFNVT 279

[Close]

BLAST of Cla97C01G024970 vs. NCBI nr
Match: XP_022146724.1 (putative F-box/LRR-repeat protein 23 [Momordica charantia])

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-12
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1   MGCDVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFN 53
           MGCD EA+AIAE+MPNLRHL +  N LT++GLQAILD C  LESLDLR C N
Sbjct: 183 MGCDEEALAIAENMPNLRHLGIFSNSLTDLGLQAILDGCPYLESLDLRHCLN 234

[Close]

BLAST of Cla97C01G024970 vs. NCBI nr
Match: XP_022925897.1 (F-box protein SKIP19-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-12
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 3   CDVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFN 53
           CD  A+AIAE+MPNLRHLQ+ GN LT  GL+AILD C DLESLDLR+CFN
Sbjct: 183 CDKGALAIAENMPNLRHLQIFGNSLTNRGLEAILDGCPDLESLDLRQCFN 232

[Close]

BLAST of Cla97C01G024970 vs. TrEMBL
Match: tr|A0A1S3AZR6|A0A1S3AZR6_CUCME (putative F-box/LRR-repeat protein 9 OS=Cucumis melo OX=3656 GN=LOC103484332 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.6e-13
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MGCDVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFN 53
           M CD EAIAIA++MP LRHLQ+LGN L++ GLQAILD C DLESLDLR+CFN
Sbjct: 170 MVCDREAIAIAKTMPKLRHLQILGNALSDKGLQAILDGCTDLESLDLRQCFN 221

[Close]

BLAST of Cla97C01G024970 vs. TrEMBL
Match: tr|A0A2P4MVA6|A0A2P4MVA6_QUESU (F-box protein skip19 OS=Quercus suber OX=58331 GN=CFP56_18505 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.1e-12
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 3   CDVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFNKT 55
           CD EA+AIA++MP LRHLQ++GN LT  GLQAILD+C  LESLDLR+CFN T
Sbjct: 228 CDEEAVAIAKNMPKLRHLQLIGNRLTNDGLQAILDNCPHLESLDLRKCFNVT 279

[Close]

BLAST of Cla97C01G024970 vs. TrEMBL
Match: tr|A0A2P4MVF2|A0A2P4MVF2_QUESU (F-box protein skip19 OS=Quercus suber OX=58331 GN=CFP56_18506 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.8e-12
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 3   CDVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFNKT 55
           CD EA+AIA++MP L HLQ++GN LT  GLQAILD C  LESLDLRRCFN T
Sbjct: 159 CDEEAVAIAKNMPELHHLQLIGNQLTNDGLQAILDGCPHLESLDLRRCFNVT 210

[Close]

BLAST of Cla97C01G024970 vs. TrEMBL
Match: tr|A0A2P4MV85|A0A2P4MV85_QUESU (F-box protein skip19 OS=Quercus suber OX=58331 GN=CFP56_18509 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.7e-12
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 3   CDVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFN 53
           CD EA+AIA++MP LRHLQ++GN LT  GLQAILD C  LESLDLR+CFN
Sbjct: 200 CDEEAVAIAKNMPELRHLQLIGNQLTNDGLQAILDGCPHLESLDLRKCFN 249

[Close]

BLAST of Cla97C01G024970 vs. TrEMBL
Match: tr|A0A0A0KM43|A0A0A0KM43_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525290 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.2e-12
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1   MGCDVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFN 53
           M CD EA+AIA++MP LRHLQ+ GN LT+ GLQAIL+ C DLESLDLR CFN
Sbjct: 170 MECDREALAIAKTMPKLRHLQIFGNALTDKGLQAILNGCPDLESLDLRHCFN 221

[Close]

BLAST of Cla97C01G024970 vs. Swiss-Prot
Match: sp|Q9M0U9|SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-12
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 4   DVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFN 53
           D +A+AIAE+MP LRHLQ+ GN L++ GL AILD+C +LE LDLRRCFN
Sbjct: 181 DDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFN 229

[Close]

BLAST of Cla97C01G024970 vs. Swiss-Prot
Match: sp|Q9S9V9|FBL23_ARATH (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.7e-12
Identity = 36/51 (70.59%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 2   GCDVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFN 53
           G D  A AIAESMP LRHLQ+LGN LT  GL AILD C  LE LDLR+CFN
Sbjct: 347 GFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCFN 397

[Close]

BLAST of Cla97C01G024970 vs. Swiss-Prot
Match: sp|Q9M0U7|FB221_ARATH (Putative F-box protein At4g05475 OS=Arabidopsis thaliana OX=3702 GN=At4g05475 PE=4 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 6.3e-12
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 3   CDVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLES-LDLRRCFN 53
           CD +A+AIAESMP LRHLQ++GN LT  GL AILD C  LE  LD+R+CFN
Sbjct: 212 CDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFN 262

[Close]

BLAST of Cla97C01G024970 vs. Swiss-Prot
Match: sp|Q9M0U8|FBL21_ARATH (Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana OX=3702 GN=FBL21 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.1e-11
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 3   CDVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCF 52
           CD +A+AIAESMP L HLQ++ N LT  GL AILD C  LE LD+R+CF
Sbjct: 222 CDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKCF 270

[Close]

BLAST of Cla97C01G024970 vs. Swiss-Prot
Match: sp|Q9M0U6|FBL22_ARATH (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.2e-11
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 4   DVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFN 53
           D +A+AIA++MP L HLQ++ N LT IGL AILD C  LE LDLR+CFN
Sbjct: 192 DNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFN 240

[Close]

BLAST of Cla97C01G024970 vs. TAIR10
Match: AT4G05460.1 (RNI-like superfamily protein)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-13
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 4   DVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFN 53
           D +A+AIAE+MP LRHLQ+ GN L++ GL AILD+C +LE LDLRRCFN
Sbjct: 181 DDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFN 229

[Close]

BLAST of Cla97C01G024970 vs. TAIR10
Match: AT4G05475.1 (RNI-like superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 3.5e-13
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 3   CDVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLES-LDLRRCFN 53
           CD +A+AIAESMP LRHLQ++GN LT  GL AILD C  LE  LD+R+CFN
Sbjct: 212 CDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFN 262

[Close]

BLAST of Cla97C01G024970 vs. TAIR10
Match: AT5G52480.1 (RNI-like superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 6.0e-13
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 4   DVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFN 53
           D +AIAIAESMP LRHLQ+ GN LT+ GL AILD C  LE LDLR+C N
Sbjct: 121 DHDAIAIAESMPKLRHLQLCGNKLTKTGLNAILDGCPHLEHLDLRQCIN 169

[Close]

BLAST of Cla97C01G024970 vs. TAIR10
Match: AT4G05470.1 (RNI-like superfamily protein)

HSP 1 Score: 68.2 bits (165), Expect = 2.3e-12
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 3   CDVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCF 52
           CD +A+AIAESMP L HLQ++ N LT  GL AILD C  LE LD+R+CF
Sbjct: 222 CDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKCF 270

[Close]

BLAST of Cla97C01G024970 vs. TAIR10
Match: AT4G05490.1 (RNI-like superfamily protein)

HSP 1 Score: 67.0 bits (162), Expect = 5.1e-12
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 4   DVEAIAIAESMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFN 53
           D +A+AIA++MP L HLQ++ N LT IGL AILD C  LE LDLR+CFN
Sbjct: 192 DNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFN 240

The following BLAST results are available for this feature:

BLAST of Cla97C01G024970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439579.1	8.4e-13	75.00	PREDICTED: putative F-box/LRR-repeat protein 9 [Cucumis melo]	[more]
XP_011029536.1	1.4e-12	76.00	PREDICTED: F-box protein SKIP19-like [Populus euphratica]	[more]
XP_023892804.1	3.2e-12	71.15	F-box protein SKIP19-like [Quercus suber] >POF21462.1 f-box protein skip19 [Quer...	[more]
XP_022146724.1	4.2e-12	71.15	putative F-box/LRR-repeat protein 23 [Momordica charantia]	[more]
XP_022925897.1	4.2e-12	74.00	F-box protein SKIP19-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Cla97C01G024970 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AZR6\|A0A1S3AZR6_CUCME	5.6e-13	75.00	putative F-box/LRR-repeat protein 9 OS=Cucumis melo OX=3656 GN=LOC103484332 PE=4...	[more]
tr\|A0A2P4MVA6\|A0A2P4MVA6_QUESU	2.1e-12	71.15	F-box protein skip19 OS=Quercus suber OX=58331 GN=CFP56_18505 PE=4 SV=1	[more]
tr\|A0A2P4MVF2\|A0A2P4MVF2_QUESU	2.8e-12	71.15	F-box protein skip19 OS=Quercus suber OX=58331 GN=CFP56_18506 PE=4 SV=1	[more]
tr\|A0A2P4MV85\|A0A2P4MV85_QUESU	4.7e-12	72.00	F-box protein skip19 OS=Quercus suber OX=58331 GN=CFP56_18509 PE=4 SV=1	[more]
tr\|A0A0A0KM43\|A0A0A0KM43_CUCSA	6.2e-12	71.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525290 PE=4 SV=1	[more]

BLAST of Cla97C01G024970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M0U9\|SKI19_ARATH	2.2e-12	67.35	F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1	[more]
sp\|Q9S9V9\|FBL23_ARATH	3.7e-12	70.59	Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE...	[more]
sp\|Q9M0U7\|FB221_ARATH	6.3e-12	66.67	Putative F-box protein At4g05475 OS=Arabidopsis thaliana OX=3702 GN=At4g05475 PE...	[more]
sp\|Q9M0U8\|FBL21_ARATH	4.1e-11	63.27	Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana OX=3702 GN=FBL21 PE...	[more]
sp\|Q9M0U6\|FBL22_ARATH	9.2e-11	63.27	Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE...	[more]

BLAST of Cla97C01G024970 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G05460.1	1.2e-13	67.35	RNI-like superfamily protein	[more]
AT4G05475.1	3.5e-13	66.67	RNI-like superfamily protein	[more]
AT5G52480.1	6.0e-13	69.39	RNI-like superfamily protein	[more]
AT4G05470.1	2.3e-12	63.27	RNI-like superfamily protein	[more]
AT4G05490.1	5.1e-12	63.27	RNI-like superfamily protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G024970.1	Cla97C01G024970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 2..63 e-value: 4.2E-10 score: 40.5
None	No IPR available	PANTHER	PTHR44078	FAMILY NOT NAMED	coord: 2..52
None	No IPR available	PANTHER	PTHR44078:SF5	F-BOX PROTEIN SKIP19-RELATED	coord: 2..52
None	No IPR available	SUPERFAMILY	SSF52047	RNI-like	coord: 8..54

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G024970	Silver-seed gourd	carwmbB0307
Cla97C01G024970	Silver-seed gourd	carwmbB0764
Cla97C01G024970	Cucumber (Gy14) v2	cgybwmbB394
Cla97C01G024970	Cucumber (Gy14) v1	cgywmbB017
Cla97C01G024970	Cucurbita maxima (Rimu)	cmawmbB667
Cla97C01G024970	Cucurbita maxima (Rimu)	cmawmbB875
Cla97C01G024970	Cucurbita moschata (Rifu)	cmowmbB639
Cla97C01G024970	Cucurbita moschata (Rifu)	cmowmbB849
Cla97C01G024970	Wild cucumber (PI 183967)	cpiwmbB433
Cla97C01G024970	Cucumber (Chinese Long) v3	cucwmbB430
Cla97C01G024970	Cucumber (Chinese Long) v2	cuwmbB412
Cla97C01G024970	Bottle gourd (USVL1VR-Ls)	lsiwmbB115
Cla97C01G024970	Melon (DHL92) v3.6.1	medwmbB507
Cla97C01G024970	Melon (DHL92) v3.5.1	mewmbB515
Cla97C01G024970	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G024970	Watermelon (97103) v1	wmwmbB234
Cla97C01G024970	Wax gourd	wgowmbB396