Cla97C01G022520 (gene) Watermelon (97103) v2

NameCla97C01G022520
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionB3 domain-containing protein family
LocationCla97Chr01 : 34245046 .. 34245357 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATACCTTCAACATGCAGGCCTATTTTCCATCAATTTTCCAGCCCGAGGGATTACCTCTAAAAGTACAGGATGCAAATGGAAAGGAAAGGAATGGATATTTCAGTTCCGTTTTTGGCCTAATAACAATACCGGGATGTATGTTCTTGAGGGGGTTACTCCCTGCATACAGTCCATGCAATTGCAAGCAGTTGACACAGGTTTGAGGTGGCATTTGCTTCTTTTGGGGTTCTTTTTTTTTAACTGGAAGTGGTTTGTAATCTTTTTCAACAATTGGCACTACCGAGACTTGCCAAGGCCAGTCTATTAG

mRNA sequence

ATGATATACCTTCAACATGCAGGCCTATTTTCCATCAATTTTCCAGCCCGAGGGATTACCTCTAAAAGTACAGGATGCAAATGGAAAGGAAAGGAATGGATATTTCAGTTCCGTTTTTGGCCTAATAACAATACCGGGATGTATGTTCTTGAGGGGGTTACTCCCTGCATACAGTCCATGCAATTGCAAGCAGTTGACACAGGTTTGAGGTGGCATTTGCTTCTTTTGGGGTTCTTTTTTTTTAACTGGAAGTGGTTTGTAATCTTTTTCAACAATTGGCACTACCGAGACTTGCCAAGGCCAGTCTATTAG

Coding sequence (CDS)

ATGATATACCTTCAACATGCAGGCCTATTTTCCATCAATTTTCCAGCCCGAGGGATTACCTCTAAAAGTACAGGATGCAAATGGAAAGGAAAGGAATGGATATTTCAGTTCCGTTTTTGGCCTAATAACAATACCGGGATGTATGTTCTTGAGGGGGTTACTCCCTGCATACAGTCCATGCAATTGCAAGCAGTTGACACAGGTTTGAGGTGGCATTTGCTTCTTTTGGGGTTCTTTTTTTTTAACTGGAAGTGGTTTGTAATCTTTTTCAACAATTGGCACTACCGAGACTTGCCAAGGCCAGTCTATTAG

Protein sequence

MIYLQHAGLFSINFPARGITSKSTGCKWKGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTGLRWHLLLLGFFFFNWKWFVIFFNNWHYRDLPRPVY
BLAST of Cla97C01G022520 vs. NCBI nr
Match: KHN19388.1 (F-box protein SKIP22 [Glycine soja])

HSP 1 Score: 84.3 bits (207), Expect = 2.6e-13
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0

Query: 29  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTG 69
           KGKEWIFQFRFWPNNN+ MYVLEGVTPCIQSMQLQA D G
Sbjct: 400 KGKEWIFQFRFWPNNNSKMYVLEGVTPCIQSMQLQAGDIG 439

BLAST of Cla97C01G022520 vs. NCBI nr
Match: XP_015888018.1 (B3 domain-containing protein Os07g0563300-like [Ziziphus jujuba])

HSP 1 Score: 84.3 bits (207), Expect = 2.6e-13
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0

Query: 29  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTG 69
           KGKEWIFQFRFWPNNN+ MYVLEGVTPCIQSMQLQA D G
Sbjct: 107 KGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDIG 146

BLAST of Cla97C01G022520 vs. NCBI nr
Match: PNX79174.1 (B3 domain-containing protein, partial [Trifolium pratense])

HSP 1 Score: 84.3 bits (207), Expect = 2.6e-13
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0

Query: 29 KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTGLRWHL 74
          KGKEWIFQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DT   W L
Sbjct: 20 KGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTA-EWAL 63

BLAST of Cla97C01G022520 vs. NCBI nr
Match: XP_004485711.1 (PREDICTED: B3 domain-containing protein Os07g0563300-like [Cicer arietinum])

HSP 1 Score: 84.0 bits (206), Expect = 3.4e-13
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0

Query: 29  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT 68
           KGKEWIFQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DT
Sbjct: 385 KGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDT 423

BLAST of Cla97C01G022520 vs. NCBI nr
Match: XP_007148240.1 (hypothetical protein PHAVU_006G191700g [Phaseolus vulgaris] >ESW20234.1 hypothetical protein PHAVU_006G191700g [Phaseolus vulgaris])

HSP 1 Score: 84.0 bits (206), Expect = 3.4e-13
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0

Query: 29  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT 68
           KGKEWIFQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DT
Sbjct: 379 KGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDT 417

BLAST of Cla97C01G022520 vs. TrEMBL
Match: tr|A0A2K3LKV0|A0A2K3LKV0_TRIPR (B3 domain-containing protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g035158 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0

Query: 29 KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTGLRWHL 74
          KGKEWIFQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DT   W L
Sbjct: 20 KGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTA-EWAL 63

BLAST of Cla97C01G022520 vs. TrEMBL
Match: tr|A0A0B2QHJ5|A0A0B2QHJ5_GLYSO (F-box protein SKIP22 OS=Glycine soja OX=3848 GN=glysoja_047251 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0

Query: 29  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTG 69
           KGKEWIFQFRFWPNNN+ MYVLEGVTPCIQSMQLQA D G
Sbjct: 400 KGKEWIFQFRFWPNNNSKMYVLEGVTPCIQSMQLQAGDIG 439

BLAST of Cla97C01G022520 vs. TrEMBL
Match: tr|I1M2C3|I1M2C3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100782114 PE=4 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-13
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0

Query: 29  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT 68
           KGKEWIFQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DT
Sbjct: 379 KGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDT 417

BLAST of Cla97C01G022520 vs. TrEMBL
Match: tr|I1MEA8|I1MEA8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100807252 PE=4 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-13
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0

Query: 29  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT 68
           KGKEWIFQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DT
Sbjct: 378 KGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDT 416

BLAST of Cla97C01G022520 vs. TrEMBL
Match: tr|G7ILC5|G7ILC5_MEDTR (AP2/B3 transcription factor family protein OS=Medicago truncatula OX=3880 GN=11434350 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-13
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0

Query: 29  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT 68
           KGKEWIFQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DT
Sbjct: 387 KGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDT 425

BLAST of Cla97C01G022520 vs. Swiss-Prot
Match: sp|Q5CCK4|VAL2_ARATH (B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana OX=3702 GN=VAL2 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-15
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0

Query: 29  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT 68
           KGKEW+FQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DT
Sbjct: 329 KGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDT 367

BLAST of Cla97C01G022520 vs. Swiss-Prot
Match: sp|Q0D5G4|Y7633_ORYSJ (B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0563300 PE=3 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 5.4e-15
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0

Query: 30  GKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT 68
           GKEW+FQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DT
Sbjct: 497 GKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDT 534

BLAST of Cla97C01G022520 vs. Swiss-Prot
Match: sp|Q6Z3U3|Y7797_ORYSJ (B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0679700 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-14
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 29  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT 68
           KGKEW FQFRFWPNNN+ MYVLEGVTPCIQS+QLQA DT
Sbjct: 406 KGKEWHFQFRFWPNNNSRMYVLEGVTPCIQSLQLQAGDT 444

BLAST of Cla97C01G022520 vs. Swiss-Prot
Match: sp|Q8W4L5|VAL1_ARATH (B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana OX=3702 GN=VAL1 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-13
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 0

Query: 29  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT 68
           +G+EW FQFR+WPNNN+ MYVLEGVTPCIQSM LQA DT
Sbjct: 338 RGREWTFQFRYWPNNNSRMYVLEGVTPCIQSMMLQAGDT 376

BLAST of Cla97C01G022520 vs. Swiss-Prot
Match: sp|O65420|VAL3_ARATH (B3 domain-containing transcription factor VAL3 OS=Arabidopsis thaliana OX=3702 GN=VAL3 PE=4 SV=3)

HSP 1 Score: 64.3 bits (155), Expect = 9.0e-10
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 0

Query: 30  GKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTGLRWHL-----LLLGF 79
           GKEW FQFRFWP++   +YVLEGVTP IQ++QLQA DT +   L     L+LGF
Sbjct: 370 GKEWRFQFRFWPSSKGRIYVLEGVTPFIQTLQLQAGDTVIFSRLDPERKLILGF 423

BLAST of Cla97C01G022520 vs. TAIR10
Match: AT4G32010.1 (HSI2-like 1)

HSP 1 Score: 83.6 bits (205), Expect = 7.9e-17
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0

Query: 29  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT 68
           KGKEW+FQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DT
Sbjct: 329 KGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDT 367

BLAST of Cla97C01G022520 vs. TAIR10
Match: AT2G30470.1 (high-level expression of sugar-inducible gene 2)

HSP 1 Score: 76.6 bits (187), Expect = 9.7e-15
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 0

Query: 29  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT 68
           +G+EW FQFR+WPNNN+ MYVLEGVTPCIQSM LQA DT
Sbjct: 338 RGREWTFQFRYWPNNNSRMYVLEGVTPCIQSMMLQAGDT 376

BLAST of Cla97C01G022520 vs. TAIR10
Match: AT4G21550.1 (VP1/ABI3-like 3)

HSP 1 Score: 64.3 bits (155), Expect = 5.0e-11
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 0

Query: 30  GKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTGLRWHL-----LLLGF 79
           GKEW FQFRFWP++   +YVLEGVTP IQ++QLQA DT +   L     L+LGF
Sbjct: 370 GKEWRFQFRFWPSSKGRIYVLEGVTPFIQTLQLQAGDTVIFSRLDPERKLILGF 423

BLAST of Cla97C01G022520 vs. TAIR10
Match: AT3G26790.1 (AP2/B3-like transcriptional factor family protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 16/34 (47.06%), Postives = 22/34 (64.71%), Query Frame = 0

Query: 33  WIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVD 67
           W F++R+WPNNN+ MYVLE     + +  LQ  D
Sbjct: 140 WTFKYRYWPNNNSRMYVLENTGDFVNAHGLQLGD 173

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KHN19388.12.6e-1390.00F-box protein SKIP22 [Glycine soja][more]
XP_015888018.12.6e-1390.00B3 domain-containing protein Os07g0563300-like [Ziziphus jujuba][more]
PNX79174.12.6e-1384.44B3 domain-containing protein, partial [Trifolium pratense][more]
XP_004485711.13.4e-1392.31PREDICTED: B3 domain-containing protein Os07g0563300-like [Cicer arietinum][more]
XP_007148240.13.4e-1392.31hypothetical protein PHAVU_006G191700g [Phaseolus vulgaris] >ESW20234.1 hypothet... [more]
Match NameE-valueIdentityDescription
tr|A0A2K3LKV0|A0A2K3LKV0_TRIPR1.7e-1384.44B3 domain-containing protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g... [more]
tr|A0A0B2QHJ5|A0A0B2QHJ5_GLYSO1.7e-1390.00F-box protein SKIP22 OS=Glycine soja OX=3848 GN=glysoja_047251 PE=4 SV=1[more]
tr|I1M2C3|I1M2C3_SOYBN2.2e-1392.31Uncharacterized protein OS=Glycine max OX=3847 GN=100782114 PE=4 SV=2[more]
tr|I1MEA8|I1MEA8_SOYBN2.2e-1392.31Uncharacterized protein OS=Glycine max OX=3847 GN=100807252 PE=4 SV=2[more]
tr|G7ILC5|G7ILC5_MEDTR2.2e-1392.31AP2/B3 transcription factor family protein OS=Medicago truncatula OX=3880 GN=114... [more]
Match NameE-valueIdentityDescription
sp|Q5CCK4|VAL2_ARATH1.4e-1589.74B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana OX=370... [more]
sp|Q0D5G4|Y7633_ORYSJ5.4e-1589.47B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica OX=399... [more]
sp|Q6Z3U3|Y7797_ORYSJ1.6e-1487.18B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica OX=399... [more]
sp|Q8W4L5|VAL1_ARATH1.8e-1379.49B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana OX=370... [more]
sp|O65420|VAL3_ARATH9.0e-1059.26B3 domain-containing transcription factor VAL3 OS=Arabidopsis thaliana OX=3702 G... [more]
Match NameE-valueIdentityDescription
AT4G32010.17.9e-1789.74HSI2-like 1[more]
AT2G30470.19.7e-1579.49high-level expression of sugar-inducible gene 2[more]
AT4G21550.15.0e-1159.26VP1/ABI3-like 3[more]
AT3G26790.11.2e-0447.06AP2/B3-like transcriptional factor family protein[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G022520.1Cla97C01G022520.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23336ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3.coord: 29..67
NoneNo IPR availablePANTHERPTHR23336:SF10SUBFAMILY NOT NAMEDcoord: 29..67

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G022520Watermelon (97103) v2wmbwmbB013
Cla97C01G022520Silver-seed gourdcarwmbB0912
Cla97C01G022520Silver-seed gourdcarwmbB0972
Cla97C01G022520Silver-seed gourdcarwmbB0997
Cla97C01G022520Cucumber (Gy14) v2cgybwmbB002
Cla97C01G022520Cucumber (Gy14) v1cgywmbB197
Cla97C01G022520Cucumber (Gy14) v1cgywmbB247
Cla97C01G022520Cucurbita maxima (Rimu)cmawmbB212
Cla97C01G022520Cucurbita maxima (Rimu)cmawmbB397
Cla97C01G022520Cucurbita maxima (Rimu)cmawmbB520
Cla97C01G022520Cucurbita maxima (Rimu)cmawmbB670
Cla97C01G022520Cucurbita moschata (Rifu)cmowmbB196
Cla97C01G022520Cucurbita moschata (Rifu)cmowmbB378
Cla97C01G022520Cucurbita moschata (Rifu)cmowmbB501
Cla97C01G022520Cucurbita moschata (Rifu)cmowmbB642
Cla97C01G022520Wild cucumber (PI 183967)cpiwmbB001
Cla97C01G022520Wild cucumber (PI 183967)cpiwmbB539
Cla97C01G022520Cucumber (Chinese Long) v3cucwmbB001
Cla97C01G022520Cucumber (Chinese Long) v3cucwmbB534
Cla97C01G022520Cucumber (Chinese Long) v2cuwmbB000
Cla97C01G022520Cucumber (Chinese Long) v2cuwmbB514
Cla97C01G022520Bottle gourd (USVL1VR-Ls)lsiwmbB073
Cla97C01G022520Bottle gourd (USVL1VR-Ls)lsiwmbB154
Cla97C01G022520Melon (DHL92) v3.6.1medwmbB130
Cla97C01G022520Melon (DHL92) v3.6.1medwmbB157
Cla97C01G022520Melon (DHL92) v3.5.1mewmbB140
Cla97C01G022520Melon (DHL92) v3.5.1mewmbB172
Cla97C01G022520Melon (DHL92) v3.5.1mewmbB515
Cla97C01G022520Watermelon (Charleston Gray)wcgwmbB172
Cla97C01G022520Watermelon (97103) v1wmwmbB111
Cla97C01G022520Watermelon (97103) v1wmwmbB234
Cla97C01G022520Watermelon (97103) v1wmwmbB307
Cla97C01G022520Wax gourdwgowmbB455