Cla97C01G018580 (gene) Watermelon (97103) v2

Overview
NameCla97C01G018580
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr01 : 31763627 .. 31764027 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTTCTCCTCTGGATAATCAGGACCGTAATTTTAGCCCTTGAGATTTGGGAAAATGATCTGAAACGAACAACTGGAGAAATGTGGAGCGGAGAATTTACAAGGTAAAGTGAACTTAGACGAAGCCACTAAAGATGAAAAACTAGACTCTAAATCTTAATTTACAGATCAGACAAAAGCAACGACCAATTTGTCATGAAAGTCGCCGATTATGATAACGATATATCGGTTCCTTTCCTGTTTTTCGCCCAATGTCAATGTAATTTCCTCATTGCAATTGTTTTTCTTCTTAAACTGCCAGGGAAGAACAAGGCTGGTGCCAAATAAGACGACGGCTAAAAGAAGAAGACAACAAGATAGCGCGGATTCGAGAGCTGATTCTCTTACTTAGCGAATAA

mRNA sequence

ATGGCTCTTCTCCTCTGGATAATCAGGACCGTAATTTTAGCCCTTGAGATTTGGGAAAATGATCTGAAACGAACAACTGGAGAAATGTGGAGCGGAGAATTTACAAGGGAAGAACAAGGCTGGTGCCAAATAAGACGACGGCTAAAAGAAGAAGACAACAAGATAGCGCGGATTCGAGAGCTGATTCTCTTACTTAGCGAATAA

Coding sequence (CDS)

ATGGCTCTTCTCCTCTGGATAATCAGGACCGTAATTTTAGCCCTTGAGATTTGGGAAAATGATCTGAAACGAACAACTGGAGAAATGTGGAGCGGAGAATTTACAAGGGAAGAACAAGGCTGGTGCCAAATAAGACGACGGCTAAAAGAAGAAGACAACAAGATAGCGCGGATTCGAGAGCTGATTCTCTTACTTAGCGAATAA

Protein sequence

MALLLWIIRTVILALEIWENDLKRTTGEMWSGEFTREEQGWCQIRRRLKEEDNKIARIRELILLLSE
Homology
[Close]
BLAST of Cla97C01G018580 vs. NCBI nr
Match: KGN48786.1 (hypothetical protein Csa_6G501270 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-08
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 0 

Query: 11 VILALEIWENDLKRTTGEMWSGEFTREEQGWCQIRRRLKEEDNKIARIR 60
          V+LALE  EN LKRTT EMWS EFTR+EQG CQI R  KEED+K  RIR
Sbjct: 13 VVLALENSENYLKRTTREMWSAEFTRKEQGCCQINRLRKEEDDKKGRIR 61

[Close]
BLAST of Cla97C01G018580 vs. TrEMBL
Match: tr|A0A0A0KM13|A0A0A0KM13_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501270 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 0 

Query: 11 VILALEIWENDLKRTTGEMWSGEFTREEQGWCQIRRRLKEEDNKIARIR 60
          V+LALE  EN LKRTT EMWS EFTR+EQG CQI R  KEED+K  RIR
Sbjct: 13 VVLALENSENYLKRTTREMWSAEFTRKEQGCCQINRLRKEEDDKKGRIR 61

The following BLAST results are available for this feature:
BLAST of Cla97C01G018580 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48786.12.8e-0871.43hypothetical protein Csa_6G501270 [Cucumis sativus][more]
BLAST of Cla97C01G018580 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KM13|A0A0A0KM13_CUCSA1.8e-0871.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501270 PE=4 SV=1[more]
BLAST of Cla97C01G018580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C01G018580 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G018580.1Cla97C01G018580.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G018580Csa6G501270Cucumber (Chinese Long) v2cuwmbB412
Cla97C01G018580CSPI06G30580Wild cucumber (PI 183967)cpiwmbB433
Cla97C01G018580CsGy6G030050Cucumber (Gy14) v2cgybwmbB394
Cla97C01G018580CsaV3_6G045800Cucumber (Chinese Long) v3cucwmbB430
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G018580Watermelon (97103) v2wmbwmbB037
Cla97C01G018580Silver-seed gourdcarwmbB0426
Cla97C01G018580Silver-seed gourdcarwmbB0791
Cla97C01G018580Silver-seed gourdcarwmbB0987
Cla97C01G018580Silver-seed gourdcarwmbB1073
Cla97C01G018580Cucumber (Gy14) v2cgybwmbB254
Cla97C01G018580Cucumber (Gy14) v1cgywmbB127
Cla97C01G018580Cucurbita maxima (Rimu)cmawmbB331
Cla97C01G018580Cucurbita maxima (Rimu)cmawmbB670
Cla97C01G018580Cucurbita maxima (Rimu)cmawmbB712
Cla97C01G018580Cucurbita maxima (Rimu)cmawmbB875
Cla97C01G018580Cucurbita moschata (Rifu)cmowmbB314
Cla97C01G018580Cucurbita moschata (Rifu)cmowmbB642
Cla97C01G018580Cucurbita moschata (Rifu)cmowmbB682
Cla97C01G018580Cucurbita moschata (Rifu)cmowmbB849
Cla97C01G018580Wild cucumber (PI 183967)cpiwmbB273
Cla97C01G018580Cucumber (Chinese Long) v3cucwmbB268
Cla97C01G018580Cucumber (Chinese Long) v2cuwmbB266
Cla97C01G018580Bottle gourd (USVL1VR-Ls)lsiwmbB115
Cla97C01G018580Bottle gourd (USVL1VR-Ls)lsiwmbB389
Cla97C01G018580Melon (DHL92) v3.6.1medwmbB451
Cla97C01G018580Melon (DHL92) v3.6.1medwmbB505
Cla97C01G018580Melon (DHL92) v3.5.1mewmbB457
Cla97C01G018580Melon (DHL92) v3.5.1mewmbB513
Cla97C01G018580Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G018580Watermelon (Charleston Gray)wcgwmbB288
Cla97C01G018580Watermelon (97103) v1wmwmbB146
Cla97C01G018580Watermelon (97103) v1wmwmbB234
Cla97C01G018580Wax gourdwgowmbB171
Cla97C01G018580Wax gourdwgowmbB398