Cla97C01G017770 (gene) Watermelon (97103) v2

Overview
NameCla97C01G017770
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionvegetative cell wall protein gp1-like
LocationCla97Chr01 : 31217383 .. 31217724 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCTTTCAACAGTTGCTTGAAGTTGTTGTTGTTTGTATCCTTGTCATTGGCAAGCATCAATATGAGCTTTGCTAGTCCTCGTCGACTTCTGGATACACTGGCAGCTCCACCTCCATTCCCAATTCCTCCTCTGCCGCCTCTGCCCAAGGCCACATTGCCACCACTGCCAAACGCTGCCTTGCCTTCACTCCCTCCGATGCCAACCGTGCCAAGAGCTACACTCCCTCCATTGCCTTCGGCGCCAGCATTGCCAAAGGCTACCTTACCTCCATTGCCACCATTACCAACAATTCCCTTAGTTCCTACCACACCACCAACCGTGCCATTGCCGGCCTAG

mRNA sequence

ATGGCTGCTTTCAACAGTTGCTTGAAGTTGTTGTTGTTTGTATCCTTGTCATTGGCAAGCATCAATATGAGCTTTGCTAGTCCTCGTCGACTTCTGGATACACTGGCAGCTCCACCTCCATTCCCAATTCCTCCTCTGCCGCCTCTGCCCAAGGCCACATTGCCACCACTGCCAAACGCTGCCTTGCCTTCACTCCCTCCGATGCCAACCGTGCCAAGAGCTACACTCCCTCCATTGCCTTCGGCGCCAGCATTGCCAAAGGCTACCTTACCTCCATTGCCACCATTACCAACAATTCCCTTAGTTCCTACCACACCACCAACCGTGCCATTGCCGGCCTAG

Coding sequence (CDS)

ATGGCTGCTTTCAACAGTTGCTTGAAGTTGTTGTTGTTTGTATCCTTGTCATTGGCAAGCATCAATATGAGCTTTGCTAGTCCTCGTCGACTTCTGGATACACTGGCAGCTCCACCTCCATTCCCAATTCCTCCTCTGCCGCCTCTGCCCAAGGCCACATTGCCACCACTGCCAAACGCTGCCTTGCCTTCACTCCCTCCGATGCCAACCGTGCCAAGAGCTACACTCCCTCCATTGCCTTCGGCGCCAGCATTGCCAAAGGCTACCTTACCTCCATTGCCACCATTACCAACAATTCCCTTAGTTCCTACCACACCACCAACCGTGCCATTGCCGGCCTAG

Protein sequence

MAAFNSCLKLLLFVSLSLASINMSFASPRRLLDTLAAPPPFPIPPLPPLPKATLPPLPNAALPSLPPMPTVPRATLPPLPSAPALPKATLPPLPPLPTIPLVPTTPPTVPLPA
Homology
[Close]
BLAST of Cla97C01G017770 vs. NCBI nr
Match: KGN48712.1 (hypothetical protein Csa_6G499070 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 1  MAAFNSCLKLLLFVSLSLASINMSFASPRRLLDTLAAPPPF-PIPP 46
          MA FNSCLK LL VSLSLASINM+FAS RRLLDT AAPPPF  IPP
Sbjct: 1  MAVFNSCLKFLLIVSLSLASINMNFASSRRLLDTPAAPPPFLSIPP 46

[Close]
BLAST of Cla97C01G017770 vs. TrEMBL
Match: tr|A0A0A0KJZ2|A0A0A0KJZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499070 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.9e-08
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 1  MAAFNSCLKLLLFVSLSLASINMSFASPRRLLDTLAAPPPF-PIPP 46
          MA FNSCLK LL VSLSLASINM+FAS RRLLDT AAPPPF  IPP
Sbjct: 1  MAVFNSCLKFLLIVSLSLASINMNFASSRRLLDTPAAPPPFLSIPP 46

The following BLAST results are available for this feature:
BLAST of Cla97C01G017770 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48712.11.0e-0782.61hypothetical protein Csa_6G499070 [Cucumis sativus][more]
BLAST of Cla97C01G017770 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KJZ2|A0A0A0KJZ2_CUCSA6.9e-0882.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499070 PE=4 SV=1[more]
BLAST of Cla97C01G017770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C01G017770 vs. TAIR10
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G017770.1Cla97C01G017770.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..113

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G017770Cucurbita moschata (Rifu)cmowmbB146
Cla97C01G017770Cucurbita moschata (Rifu)cmowmbB150
Cla97C01G017770Cucurbita moschata (Rifu)cmowmbB642
Cla97C01G017770Cucurbita moschata (Rifu)cmowmbB775
Cla97C01G017770Cucurbita moschata (Rifu)cmowmbB849
Cla97C01G017770Wild cucumber (PI 183967)cpiwmbB101
Cla97C01G017770Wild cucumber (PI 183967)cpiwmbB183
Cla97C01G017770Wild cucumber (PI 183967)cpiwmbB433
Cla97C01G017770Cucumber (Chinese Long) v3cucwmbB103
Cla97C01G017770Cucumber (Chinese Long) v3cucwmbB181
Cla97C01G017770Cucumber (Chinese Long) v3cucwmbB430
Cla97C01G017770Cucumber (Chinese Long) v2cuwmbB099
Cla97C01G017770Cucumber (Chinese Long) v2cuwmbB180
Cla97C01G017770Cucumber (Chinese Long) v2cuwmbB412
Cla97C01G017770Bottle gourd (USVL1VR-Ls)lsiwmbB115
Cla97C01G017770Bottle gourd (USVL1VR-Ls)lsiwmbB259
Cla97C01G017770Bottle gourd (USVL1VR-Ls)lsiwmbB424
Cla97C01G017770Melon (DHL92) v3.6.1medwmbB260
Cla97C01G017770Melon (DHL92) v3.6.1medwmbB303
Cla97C01G017770Melon (DHL92) v3.6.1medwmbB505
Cla97C01G017770Melon (DHL92) v3.5.1mewmbB275
Cla97C01G017770Melon (DHL92) v3.5.1mewmbB314
Cla97C01G017770Melon (DHL92) v3.5.1mewmbB513
Cla97C01G017770Watermelon (Charleston Gray)wcgwmbB060
Cla97C01G017770Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G017770Watermelon (Charleston Gray)wcgwmbB316
Cla97C01G017770Watermelon (97103) v1wmwmbB080
Cla97C01G017770Watermelon (97103) v1wmwmbB234
Cla97C01G017770Watermelon (97103) v1wmwmbB355
Cla97C01G017770Wax gourdwgowmbB398
Cla97C01G017770Wax gourdwgowmbB553
Cla97C01G017770Watermelon (97103) v2wmbwmbB005
Cla97C01G017770Watermelon (97103) v2wmbwmbB040
Cla97C01G017770Watermelon (97103) v2wmbwmbB041
Cla97C01G017770Silver-seed gourdcarwmbB0056
Cla97C01G017770Silver-seed gourdcarwmbB0426
Cla97C01G017770Silver-seed gourdcarwmbB0655
Cla97C01G017770Silver-seed gourdcarwmbB0791
Cla97C01G017770Cucumber (Gy14) v2cgybwmbB093
Cla97C01G017770Cucumber (Gy14) v2cgybwmbB173
Cla97C01G017770Cucumber (Gy14) v2cgybwmbB394
Cla97C01G017770Cucumber (Gy14) v1cgywmbB127
Cla97C01G017770Cucumber (Gy14) v1cgywmbB272
Cla97C01G017770Cucumber (Gy14) v1cgywmbB537
Cla97C01G017770Cucurbita maxima (Rimu)cmawmbB162
Cla97C01G017770Cucurbita maxima (Rimu)cmawmbB165
Cla97C01G017770Cucurbita maxima (Rimu)cmawmbB670
Cla97C01G017770Cucurbita maxima (Rimu)cmawmbB801
Cla97C01G017770Cucurbita maxima (Rimu)cmawmbB875
Cla97C01G017770Cucurbita moschata (Rifu)cmowmbB003