Cla97C01G016410 (gene) Watermelon (97103) v2

Overview
NameCla97C01G016410
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionlysine-rich arabinogalactan protein 18-like
LocationCla97Chr01 : 30125878 .. 30127172 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGACAGTCCGTAATAGCTCTTGTTCTCATCTGCGCCGTCGTCGCTGGTGTCGGTGGCCAGTCTCCGGCTGCAGCTCCGACTACTACGCCGGGGGCCACCCCGCCTGCAGCCGCGAAGTATCTAACTCCTGCCGCATCTCCTGTATCACCACCGACAAATTCATCTCCCGCCGCCGCTCCTCAAAAGCCGGCCACTCCAGCACCGGTCTCCACGCCGCCTGCTTCGGCGCCACCAGCAGTCGCTCCAGTAGCCTCTCCACCAGCCAGCACTCCTCCGACTGCTTCAGTTCCTACTAGCTCTCCACCGGCTGCTTCTGTACCACCTACCTCTCCGCCGGCTGCTACCGTTCCAGCGAGCTCCCCACCTGTTCCGGTCCCGGTGAGTTCTCCACCAGTTCCCGTACCGGTGAGCTCTCCTCCAGTACCAACTCCAACTGAATCTCCTCCCGCTCCCGAAAGTTCTCCTCCTGCTCCAGTCGCATCGCCTCCCGTTGAGGTTCCGGCGCCGGCGCCTAGCAAGAAGAAGTCCAAGAAGCACAAAGCACCAGCTCCTTCTCCGGCGTTGCTTGGTCCACCTGCTCCTCCTTCCGAAGCCCCTGGAGCAAGCGAGGAAGGTCCTTCGCCCAGCCCTTCACTAGAGGACAAGGTAATTTAATTTTGACCTAAATCTCCGACATTACCGTCTTAAAATTTACTTGCATTGTCATTCATCACAAGATCTGCAACATTCCCTCAACGAACAGTCATCATACATATCCATAGCCAAGATCTCACTATAACTTTGATAGCATTGGTCCATGATAGCGCTTTTAGGGTTTTGCCATGCCTGCATTTGCACTGGCTTGATAGAAGAGTGAATGAGCCTAATGCCACGCGCCACCGTCTCGCGTGGATCTAGCGCGTTAAAGCCTTTCAGTTGAGATAATTACCATGGTTGAGTCTAAACTAACCCAAGGTAAAGAAAACGATCAAAACGCGCCAGAAAAAGGAATCAGAAATGTCAGAATGTCAGAATGTCAGATCACACTACGCTCGAGATTATTAAATGTCTCCAGTTTGCTCAGATCACACTGAGGGAAACACGTTAAAAAATTTAATTGACTTCAGCTTTTCTTTAAATCATGTCATTAATTCTAATATAGATTAATCCAATTCATAACTAAATATTAAAAACTTTCCGTGGATCTGTGATTGTTGCAGAGTGGAGCTGAAACATTGTGGAACCTGCAGAAGGTGGCCGGAAGTTTGGCTTTCGGATGGGCTGCCGTCGCCGTCAGCTTCATCTTCTAG

mRNA sequence

ATGGGGAGACAGTCCGTAATAGCTCTTGTTCTCATCTGCGCCGTCGTCGCTGGTGTCGGTGGCCAGTCTCCGGCTGCAGCTCCGACTACTACGCCGGGGGCCACCCCGCCTGCAGCCGCGAAGTATCTAACTCCTGCCGCATCTCCTGTATCACCACCGACAAATTCATCTCCCGCCGCCGCTCCTCAAAAGCCGGCCACTCCAGCACCGGTCTCCACGCCGCCTGCTTCGGCGCCACCAGCAGTCGCTCCAGTAGCCTCTCCACCAGCCAGCACTCCTCCGACTGCTTCAGTTCCTACTAGCTCTCCACCGGCTGCTTCTGTACCACCTACCTCTCCGCCGGCTGCTACCGTTCCAGCGAGCTCCCCACCTGTTCCGGTCCCGGTGAGTTCTCCACCAGTTCCCGTACCGGTGAGCTCTCCTCCAGTACCAACTCCAACTGAATCTCCTCCCGCTCCCGAAAGTTCTCCTCCTGCTCCAGTCGCATCGCCTCCCGTTGAGGTTCCGGCGCCGGCGCCTAGCAAGAAGAAGTCCAAGAAGCACAAAGCACCAGCTCCTTCTCCGGCGTTGCTTGGTCCACCTGCTCCTCCTTCCGAAGCCCCTGGAGCAAGCGAGGAAGGTCCTTCGCCCAGCCCTTCACTAGAGGACAAGAGTGGAGCTGAAACATTGTGGAACCTGCAGAAGGTGGCCGGAAGTTTGGCTTTCGGATGGGCTGCCGTCGCCGTCAGCTTCATCTTCTAG

Coding sequence (CDS)

ATGGGGAGACAGTCCGTAATAGCTCTTGTTCTCATCTGCGCCGTCGTCGCTGGTGTCGGTGGCCAGTCTCCGGCTGCAGCTCCGACTACTACGCCGGGGGCCACCCCGCCTGCAGCCGCGAAGTATCTAACTCCTGCCGCATCTCCTGTATCACCACCGACAAATTCATCTCCCGCCGCCGCTCCTCAAAAGCCGGCCACTCCAGCACCGGTCTCCACGCCGCCTGCTTCGGCGCCACCAGCAGTCGCTCCAGTAGCCTCTCCACCAGCCAGCACTCCTCCGACTGCTTCAGTTCCTACTAGCTCTCCACCGGCTGCTTCTGTACCACCTACCTCTCCGCCGGCTGCTACCGTTCCAGCGAGCTCCCCACCTGTTCCGGTCCCGGTGAGTTCTCCACCAGTTCCCGTACCGGTGAGCTCTCCTCCAGTACCAACTCCAACTGAATCTCCTCCCGCTCCCGAAAGTTCTCCTCCTGCTCCAGTCGCATCGCCTCCCGTTGAGGTTCCGGCGCCGGCGCCTAGCAAGAAGAAGTCCAAGAAGCACAAAGCACCAGCTCCTTCTCCGGCGTTGCTTGGTCCACCTGCTCCTCCTTCCGAAGCCCCTGGAGCAAGCGAGGAAGGTCCTTCGCCCAGCCCTTCACTAGAGGACAAGAGTGGAGCTGAAACATTGTGGAACCTGCAGAAGGTGGCCGGAAGTTTGGCTTTCGGATGGGCTGCCGTCGCCGTCAGCTTCATCTTCTAG

Protein sequence

MGRQSVIALVLICAVVAGVGGQSPAAAPTTTPGATPPAAAKYLTPAASPVSPPTNSSPAAAPQKPATPAPVSTPPASAPPAVAPVASPPASTPPTASVPTSSPPAASVPPTSPPAATVPASSPPVPVPVSSPPVPVPVSSPPVPTPTESPPAPESSPPAPVASPPVEVPAPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGASEEGPSPSPSLEDKSGAETLWNLQKVAGSLAFGWAAVAVSFIF
Homology
[Close]
BLAST of Cla97C01G016410 vs. NCBI nr
Match: XP_022950679.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita moschata])

HSP 1 Score: 57.8 bits (138), Expect = 6.1e-05
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPTT 31
          MGRQSVIALVLICAVVAGVGGQSPAAAPTT
Sbjct: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPTT 30

[Close]
BLAST of Cla97C01G016410 vs. NCBI nr
Match: XP_022963306.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita moschata])

HSP 1 Score: 57.8 bits (138), Expect = 6.1e-05
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPTT 31
          MGRQSVIALVLICAVVAGVGGQSPAAAPTT
Sbjct: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPTT 30

[Close]
BLAST of Cla97C01G016410 vs. NCBI nr
Match: XP_023003133.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita maxima])

HSP 1 Score: 57.8 bits (138), Expect = 6.1e-05
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPTT 31
          MGRQSVIALVLICAVVAGVGGQSPAAAPTT
Sbjct: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPTT 30

[Close]
BLAST of Cla97C01G016410 vs. NCBI nr
Match: XP_023545096.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.8 bits (138), Expect = 6.1e-05
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPTT 31
          MGRQSVIALVLICAVVAGVGGQSPAAAPTT
Sbjct: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPTT 30

[Close]
BLAST of Cla97C01G016410 vs. NCBI nr
Match: XP_023517454.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.8 bits (138), Expect = 6.1e-05
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPTT 31
          MGRQSVIALVLICAVVAGVGGQSPAAAPTT
Sbjct: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPTT 30

[Close]
BLAST of Cla97C01G016410 vs. TrEMBL
Match: tr|Q9XIV1|Q9XIV1_CUCSA (Arabinogalactan protein OS=Cucumis sativus OX=3659 GN=Csa_6G493850 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-04
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPT 30
          MGRQSVIALVLICAVVAGVGGQSPAAAPT
Sbjct: 1  MGRQSVIALVLICAVVAGVGGQSPAAAPT 29

The following BLAST results are available for this feature:
BLAST of Cla97C01G016410 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022950679.16.1e-05100.00lysine-rich arabinogalactan protein 18-like [Cucurbita moschata][more]
XP_022963306.16.1e-05100.00lysine-rich arabinogalactan protein 18-like [Cucurbita moschata][more]
XP_023003133.16.1e-05100.00lysine-rich arabinogalactan protein 18-like [Cucurbita maxima][more]
XP_023545096.16.1e-05100.00lysine-rich arabinogalactan protein 18-like [Cucurbita pepo subsp. pepo][more]
XP_023517454.16.1e-05100.00lysine-rich arabinogalactan protein 18-like [Cucurbita pepo subsp. pepo][more]
BLAST of Cla97C01G016410 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|Q9XIV1|Q9XIV1_CUCSA1.5e-04100.00Arabinogalactan protein OS=Cucumis sativus OX=3659 GN=Csa_6G493850 PE=2 SV=1[more]
BLAST of Cla97C01G016410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C01G016410 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G016410.1Cla97C01G016410.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 76..93
score: 36.67
coord: 38..59
score: 25.45
coord: 94..119
score: 35.38
coord: 59..75
score: 27.06
coord: 25..37
score: 46.15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 187..203
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..171
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..219
NoneNo IPR availablePANTHERPTHR37209FAMILY NOT NAMEDcoord: 97..242
NoneNo IPR availablePANTHERPTHR37209:SF2LYSINE-RICH ARABINOGALACTAN PROTEIN 17-RELATEDcoord: 1..121
coord: 97..242
NoneNo IPR availablePANTHERPTHR37209FAMILY NOT NAMEDcoord: 1..121

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G016410Cla013996Watermelon (97103) v1wmwmbB234
Cla97C01G016410ClCG01G017230Watermelon (Charleston Gray)wcgwmbB089
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G016410Watermelon (97103) v2wmbwmbB038
Cla97C01G016410Silver-seed gourdcarwmbB0002
Cla97C01G016410Silver-seed gourdcarwmbB0185
Cla97C01G016410Silver-seed gourdcarwmbB0426
Cla97C01G016410Cucumber (Gy14) v2cgybwmbB092
Cla97C01G016410Cucumber (Gy14) v2cgybwmbB394
Cla97C01G016410Cucumber (Gy14) v1cgywmbB127
Cla97C01G016410Cucumber (Gy14) v1cgywmbB672
Cla97C01G016410Cucurbita maxima (Rimu)cmawmbB160
Cla97C01G016410Cucurbita maxima (Rimu)cmawmbB562
Cla97C01G016410Cucurbita maxima (Rimu)cmawmbB670
Cla97C01G016410Cucurbita maxima (Rimu)cmawmbB800
Cla97C01G016410Cucurbita maxima (Rimu)cmawmbB875
Cla97C01G016410Cucurbita moschata (Rifu)cmowmbB144
Cla97C01G016410Cucurbita moschata (Rifu)cmowmbB540
Cla97C01G016410Cucurbita moschata (Rifu)cmowmbB642
Cla97C01G016410Cucurbita moschata (Rifu)cmowmbB776
Cla97C01G016410Cucurbita moschata (Rifu)cmowmbB849
Cla97C01G016410Wild cucumber (PI 183967)cpiwmbB100
Cla97C01G016410Wild cucumber (PI 183967)cpiwmbB433
Cla97C01G016410Cucumber (Chinese Long) v3cucwmbB102
Cla97C01G016410Cucumber (Chinese Long) v3cucwmbB430
Cla97C01G016410Cucumber (Chinese Long) v2cuwmbB098
Cla97C01G016410Cucumber (Chinese Long) v2cuwmbB412
Cla97C01G016410Bottle gourd (USVL1VR-Ls)lsiwmbB115
Cla97C01G016410Bottle gourd (USVL1VR-Ls)lsiwmbB422
Cla97C01G016410Melon (DHL92) v3.6.1medwmbB259
Cla97C01G016410Melon (DHL92) v3.6.1medwmbB505
Cla97C01G016410Melon (DHL92) v3.5.1mewmbB274
Cla97C01G016410Melon (DHL92) v3.5.1mewmbB513
Cla97C01G016410Watermelon (Charleston Gray)wcgwmbB314
Cla97C01G016410Watermelon (97103) v1wmwmbB078
Cla97C01G016410Wax gourdwgowmbB285
Cla97C01G016410Wax gourdwgowmbB397