Cla97C01G015470 (gene) Watermelon (97103) v2

Overview
NameCla97C01G015470
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Description30S ribosomal protein S3, chloroplastic
LocationCla97Chr01 : 29284920 .. 29287164 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATGGCAGCTGACATCAATGGCCACCGGGTAATTAATTGTTCGAGGCTTGATAGTACGAGTTAACACTTTCATTCTTTTCTTAAATAAATAATTTTCTTATAAAATGGAATGGTTAAAGTTCTAATGATGGGTAGTCATCTACAAGCATCTCAAAGTGGAAGGAGATTGCAGAATCACATGGCGTTCAGGAATCAAAAGGCCTAATTTCAATTTTCACGGGAAAATGCACAATGTCTGTGTTAACCAATATGATCGTCATACAATATATCATATTTTTCTTTTATTCTCAATATATCAATTGTGGTGTTACACCAGCTTATTTAACATGTACTGCTTAGTTTTGGAATGTTCTATCTAGTTCCTTTTTCATAATTATCTGGCTTCTGGTCTAAAAATGATACATTGATTTTATTGTAGGTTTATAATTCTTTCTGCCGAGTTTGACACTCCCAGCTGCAACTAATTGATCACTGGCTGCTTCAATATGTTGAACTTTATGCACATTGTGCCGTCCTCTTTTTCATTTTCCTTAGTGCACGGGATACTATTATAATGAATGAGAGCAGCTGTCCTATCTTTGCAATGGACCTTGGTTCTTTCTTTCCATCAACGAGCTCTGATTCGGACACCCTGCTTATCGTAGAACGTAGTCGATTCTAACCATGTTTTTTTGTTAAGGATAAATGATGTATTAGGCCATCCTTAGACTGATTATTCTGCCGTGTGAGATTGCCATCAAAATAAAAGTTGCGTTGTTTGAAGTTATGTGCATCATGCGAAAGCATAGCTAAACCCTTGAGAAAAATACGAGCAGTCAGATAATGAAGGTAGTAGGAAACTAAACCCTTTATTTAAGGGCATCTCCAGAATTTGTTGGCTTGACAATGTTTTTTGTTTTATATCTTTTTGATATTTACTTTTTGAATAATTTCTATTGATTTCGGCATTGCATAGCTAAGTTGGTTCAAATCATCAAATTTGAGAAATTTGTATAGATGACCCAAATTGAAGGGTCTAAATGAAATTTGGGCTCCTCCCAGATTTTCAATGAAATATGGCCTTCTGCTGGCGTCAGCGTCGTGTGAATTTATCGAACTGCCCTCAAAATCGTTATCCAGAGGCACTCACACGACTTTCGGTCTTGTCTCTTAGTCCCCACTATTTTCCTTTTTCTTTTTTCTTTGATTCTTTTTTTGTGTTTTTTTTATACATTTCTTCTTCTTTTTTTTATTTTATTTTTACTTTTTTTCTGTTTTTTTTGTTGTCGTCTTTTTTTTTTTTTTCCATTTTTCTTTCATCATTTTTTTGTGTTTCTTTGCATCAAGCATCAAACATAGAAAATAGAGCATTAGACCATCAAGTAAACTTACAACATAAAGTATACTCTCTGTCACTTTCTCGTAAAGCTTTTTGTGACTTTTCCAAACTTCGATACGACCAACTCCAATGTGCTCAAGAGAAAGCGAGCGAGAGAGATAAGAGTAATTGTGAGTGAGGAAATGAAGCGAGAGCGAGGTTGAGAGGCCCAAATGAGCGAGGTTGGAATTTCCTGTAAAGTTGACCAGTCTACTCCTAACCTCGCTCTCGCTTCCTTTCCTCATTTACCATCACTCTTATCTCTATTGCTCTTTCTTTCTCTCTCACTTTTGCTCTTTTGCTCTCACTCTTCGAAGTTTGTCGCGTCCAAGTTTGGAAAAGTCACAGAGAGCTTTACGGGAAAGTGATAGAGATTATACTTTATGTTGTGTTTGATGCTCGATGCAAAGAAACGGAAAAAAAAAGACATACAAAAAAAGAACAAAAGTAAAAAAAGGGAAGAAGAAATGCATAAAAAAAAACAAATAAATTTCCCAAAACCATTTTTGGATAACTTTATTGAATTTCATAGTTATTTCGGTTTACTTTTTTTATTTTTTTATTTTTAGTTTCAAGATATTGTTGTCGTAGCTTAAAATATATGTTCTAACATGTTAATATAGACATGTATTCCAATCGTTTAGGTTAAAATTGAGTGGTAGGTGAGAAATTATTTATTTATGAATAAAGGAATATACAAATTAACAAAATAACTTCCTGCTTTGAATTCAATCTTGAAGAAATTGTACGTTTCAAATGGATCAAAGAAGGAAGGGTTCCTCTACAAACCATTCGAGCTGAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGGTATTAGGCGTAAACATTTGGATATTTGTAGACGAACAATAA

mRNA sequence

ATGAAAATGGCAGCTGACATCAATGGCCACCGGGTTTATAATTCTTTCTGCCGACTGCAACTAATTGATCACTGGCTGCTTCAATATGTTGAACTTTATGCACATTGTGCCGTCCTCTTTTTCATTTTCCTTAGTGCACGGGATACTATTATAATGAATGAGAGCAGCTGTCCTATCTTTGCAATGGACCTTGGTTCTTTCTTTCCATCAACGAGCTCTGATTCGGACACCCTGCTTATCGTAGAACAAATTGTACGTTTCAAATGGATCAAAGAAGGAAGGGTTCCTCTACAAACCATTCGAGCTGAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGGTATTAGGCGTAAACATTTGGATATTTGTAGACGAACAATAA

Coding sequence (CDS)

ATGAAAATGGCAGCTGACATCAATGGCCACCGGGTTTATAATTCTTTCTGCCGACTGCAACTAATTGATCACTGGCTGCTTCAATATGTTGAACTTTATGCACATTGTGCCGTCCTCTTTTTCATTTTCCTTAGTGCACGGGATACTATTATAATGAATGAGAGCAGCTGTCCTATCTTTGCAATGGACCTTGGTTCTTTCTTTCCATCAACGAGCTCTGATTCGGACACCCTGCTTATCGTAGAACAAATTGTACGTTTCAAATGGATCAAAGAAGGAAGGGTTCCTCTACAAACCATTCGAGCTGAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGGTATTAGGCGTAAACATTTGGATATTTGTAGACGAACAATAA

Protein sequence

MKMAADINGHRVYNSFCRLQLIDHWLLQYVELYAHCAVLFFIFLSARDTIIMNESSCPIFAMDLGSFFPSTSSDSDTLLIVEQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
Homology
[Close]
BLAST of Cla97C01G015470 vs. NCBI nr
Match: YP_009456184.1 (ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM88705.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM88995.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89054.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89113.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89172.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89231.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89290.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89350.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89409.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89468.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89527.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89587.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89646.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89705.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89764.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89823.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89882.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89941.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90000.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90059.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90118.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90177.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90236.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90295.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90354.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90413.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90472.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90531.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90590.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90649.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90708.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90767.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90826.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90885.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90944.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM91003.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM91062.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM91295.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AUJ21949.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 93.6 bits (231), Expect = 5.3e-16
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 82  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ 130
           ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of Cla97C01G015470 vs. NCBI nr
Match: AHM88822.1 (ribosomal protein S3, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 93.6 bits (231), Expect = 5.3e-16
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 82  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ 130
           ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of Cla97C01G015470 vs. NCBI nr
Match: AHM88879.1 (ribosomal protein S3 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 93.6 bits (231), Expect = 5.3e-16
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 82  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ 130
           ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of Cla97C01G015470 vs. NCBI nr
Match: AHM88937.1 (ribosomal protein S3 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 93.6 bits (231), Expect = 5.3e-16
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 82  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ 130
           ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of Cla97C01G015470 vs. NCBI nr
Match: AHM91120.1 (ribosomal protein S3 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 93.6 bits (231), Expect = 5.3e-16
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 82  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ 130
           ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of Cla97C01G015470 vs. TrEMBL
Match: tr|X2EZ87|X2EZ87_LAGSI (30S ribosomal protein S3, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps3 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.5e-16
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 82  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ 130
           ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of Cla97C01G015470 vs. TrEMBL
Match: tr|A0A249RXQ1|A0A249RXQ1_CUCME (30S ribosomal protein S3, chloroplastic OS=Cucumis melo subsp. agrestis OX=217619 GN=rps3 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.5e-16
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 82  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ 130
           ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of Cla97C01G015470 vs. TrEMBL
Match: tr|A0A286NFY0|A0A286NFY0_CUCME (30S ribosomal protein S3, chloroplastic OS=Cucumis melo var. flexuosus OX=1120798 GN=rps3 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.5e-16
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 82  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ 130
           ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of Cla97C01G015470 vs. TrEMBL
Match: tr|A0A1P8LDT5|A0A1P8LDT5_CITLA (Ribosomal protein S3 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rps3 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.5e-16
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 82  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ 130
           ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of Cla97C01G015470 vs. TrEMBL
Match: tr|G3ETT6|G3ETT6_CUCME (30S ribosomal protein S3, chloroplastic OS=Cucumis melo subsp. melo OX=412675 GN=rps3 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.5e-16
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 82  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ 130
           ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]
BLAST of Cla97C01G015470 vs. Swiss-Prot
Match: sp|Q4VZN0|RR3_CUCSA (30S ribosomal protein S3, chloroplastic OS=Cucumis sativus OX=3659 GN=rps3 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-18
Identity = 38/48 (79.17%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 82  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ 130
           ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYG+LG+ IWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGILGIKIWIFVDEQ 218

[Close]
BLAST of Cla97C01G015470 vs. Swiss-Prot
Match: sp|A1EA47|RR3_AGRST (30S ribosomal protein S3, chloroplastic OS=Agrostis stolonifera OX=63632 GN=rps3 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.7e-16
Identity = 36/48 (75.00%), Postives = 44/48 (91.67%), Query Frame = 0 

Query: 82  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ 130
           ++I R + IK+GR+PLQTIRA+IDYCCYP+RTIYGVLGV IWIFVDE+
Sbjct: 192 KEIARAECIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239

[Close]
BLAST of Cla97C01G015470 vs. Swiss-Prot
Match: sp|Q332T8|RR3_LACSA (30S ribosomal protein S3, chloroplastic OS=Lactuca sativa OX=4236 GN=rps3 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.7e-16
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 82  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVD 128
           ++I R +WI+EGRVPLQTIRA+IDYCCY VRTIYGVLG+ IWIF+D
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYTVRTIYGVLGIKIWIFID 216

[Close]
BLAST of Cla97C01G015470 vs. Swiss-Prot
Match: sp|A8Y9C5|RR3_LOLPR (30S ribosomal protein S3, chloroplastic OS=Lolium perenne OX=4522 GN=rps3 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.7e-16
Identity = 36/48 (75.00%), Postives = 44/48 (91.67%), Query Frame = 0 

Query: 82  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ 130
           ++I R + IK+GR+PLQTIRA+IDYCCYP+RTIYGVLGV IWIFVDE+
Sbjct: 192 KEIARAECIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239

[Close]
BLAST of Cla97C01G015470 vs. Swiss-Prot
Match: sp|Q6END5|RR3_ORYNI (30S ribosomal protein S3, chloroplastic OS=Oryza nivara OX=4536 GN=rps3 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.7e-16
Identity = 36/48 (75.00%), Postives = 44/48 (91.67%), Query Frame = 0 

Query: 82  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ 130
           ++I R + IK+GR+PLQTIRA+IDYCCYP+RTIYGVLGV IWIFVDE+
Sbjct: 192 KEIARAECIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239

[Close]
BLAST of Cla97C01G015470 vs. TAIR10
Match: ATCG00800.1 (structural constituent of ribosome)

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-16
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 82  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ 130
           ++I R +WI+EGRVPLQTI A+IDYC Y VRTIYGVLG+ IWIFVDE+
Sbjct: 171 KEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218

The following BLAST results are available for this feature:
BLAST of Cla97C01G015470 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009456184.15.3e-1681.25ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM88705.1 ribosomal p... [more]
AHM88822.15.3e-1681.25ribosomal protein S3, partial (chloroplast) [Lagenaria siceraria][more]
AHM88879.15.3e-1681.25ribosomal protein S3 (chloroplast) [Lagenaria siceraria][more]
AHM88937.15.3e-1681.25ribosomal protein S3 (chloroplast) [Lagenaria siceraria][more]
AHM91120.15.3e-1681.25ribosomal protein S3 (chloroplast) [Lagenaria siceraria][more]
BLAST of Cla97C01G015470 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|X2EZ87|X2EZ87_LAGSI3.5e-1681.2530S ribosomal protein S3, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps3 P... [more]
tr|A0A249RXQ1|A0A249RXQ1_CUCME3.5e-1681.2530S ribosomal protein S3, chloroplastic OS=Cucumis melo subsp. agrestis OX=21761... [more]
tr|A0A286NFY0|A0A286NFY0_CUCME3.5e-1681.2530S ribosomal protein S3, chloroplastic OS=Cucumis melo var. flexuosus OX=112079... [more]
tr|A0A1P8LDT5|A0A1P8LDT5_CITLA3.5e-1681.25Ribosomal protein S3 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rps3 PE=3... [more]
tr|G3ETT6|G3ETT6_CUCME3.5e-1681.2530S ribosomal protein S3, chloroplastic OS=Cucumis melo subsp. melo OX=412675 GN... [more]
BLAST of Cla97C01G015470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q4VZN0|RR3_CUCSA2.3e-1879.1730S ribosomal protein S3, chloroplastic OS=Cucumis sativus OX=3659 GN=rps3 PE=3 ... [more]
sp|A1EA47|RR3_AGRST4.7e-1675.0030S ribosomal protein S3, chloroplastic OS=Agrostis stolonifera OX=63632 GN=rps3... [more]
sp|Q332T8|RR3_LACSA4.7e-1676.0930S ribosomal protein S3, chloroplastic OS=Lactuca sativa OX=4236 GN=rps3 PE=3 S... [more]
sp|A8Y9C5|RR3_LOLPR4.7e-1675.0030S ribosomal protein S3, chloroplastic OS=Lolium perenne OX=4522 GN=rps3 PE=3 S... [more]
sp|Q6END5|RR3_ORYNI4.7e-1675.0030S ribosomal protein S3, chloroplastic OS=Oryza nivara OX=4536 GN=rps3 PE=3 SV=... [more]
BLAST of Cla97C01G015470 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00800.11.0e-1672.92structural constituent of ribosome[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR005704Ribosomal_S3_bac
IPR001351Ribosomal_S3_C
IPR036419Ribosomal_S3_C_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0009536 plastid
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G015470.1Cla97C01G015470.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036419Ribosomal protein S3, C-terminal domain superfamilyGENE3DG3DSA:3.30.1140.32coord: 79..129
e-value: 2.6E-14
score: 55.3
IPR036419Ribosomal protein S3, C-terminal domain superfamilySUPERFAMILYSSF54821Ribosomal protein S3 C-terminal domaincoord: 83..128
IPR001351Ribosomal protein S3, C-terminalPFAMPF00189Ribosomal_S3_Ccoord: 82..124
e-value: 1.7E-11
score: 44.4
NoneNo IPR availablePANTHERPTHR1176030S/40S RIBOSOMAL PROTEIN S3coord: 83..128
IPR005704Ribosomal protein S3, bacterialPANTHERPTHR11760:SF1930S RIBOSOMAL PROTEIN S3, CHLOROPLASTICcoord: 83..128

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G015470Watermelon (97103) v2wmbwmbB039
Cla97C01G015470Watermelon (97103) v2wmbwmbB044
Cla97C01G015470Silver-seed gourdcarwmbB0185
Cla97C01G015470Silver-seed gourdcarwmbB0426
Cla97C01G015470Silver-seed gourdcarwmbB0839
Cla97C01G015470Cucumber (Gy14) v2cgybwmbB095
Cla97C01G015470Cucumber (Gy14) v2cgybwmbB097
Cla97C01G015470Cucumber (Gy14) v2cgybwmbB394
Cla97C01G015470Cucumber (Gy14) v1cgywmbB127
Cla97C01G015470Cucumber (Gy14) v1cgywmbB149
Cla97C01G015470Cucumber (Gy14) v1cgywmbB406
Cla97C01G015470Cucurbita maxima (Rimu)cmawmbB670
Cla97C01G015470Cucurbita maxima (Rimu)cmawmbB800
Cla97C01G015470Cucurbita maxima (Rimu)cmawmbB875
Cla97C01G015470Cucurbita moschata (Rifu)cmowmbB147
Cla97C01G015470Cucurbita moschata (Rifu)cmowmbB577
Cla97C01G015470Cucurbita moschata (Rifu)cmowmbB642
Cla97C01G015470Cucurbita moschata (Rifu)cmowmbB777
Cla97C01G015470Cucurbita moschata (Rifu)cmowmbB849
Cla97C01G015470Wild cucumber (PI 183967)cpiwmbB103
Cla97C01G015470Wild cucumber (PI 183967)cpiwmbB104
Cla97C01G015470Wild cucumber (PI 183967)cpiwmbB433
Cla97C01G015470Cucumber (Chinese Long) v3cucwmbB106
Cla97C01G015470Cucumber (Chinese Long) v3cucwmbB107
Cla97C01G015470Cucumber (Chinese Long) v3cucwmbB430
Cla97C01G015470Cucumber (Chinese Long) v2cuwmbB101
Cla97C01G015470Cucumber (Chinese Long) v2cuwmbB102
Cla97C01G015470Cucumber (Chinese Long) v2cuwmbB412
Cla97C01G015470Bottle gourd (USVL1VR-Ls)lsiwmbB039
Cla97C01G015470Bottle gourd (USVL1VR-Ls)lsiwmbB115
Cla97C01G015470Bottle gourd (USVL1VR-Ls)lsiwmbB423
Cla97C01G015470Melon (DHL92) v3.6.1medwmbB074
Cla97C01G015470Melon (DHL92) v3.6.1medwmbB261
Cla97C01G015470Melon (DHL92) v3.6.1medwmbB505
Cla97C01G015470Melon (DHL92) v3.5.1mewmbB079
Cla97C01G015470Melon (DHL92) v3.5.1mewmbB276
Cla97C01G015470Melon (DHL92) v3.5.1mewmbB513
Cla97C01G015470Watermelon (Charleston Gray)wcgwmbB004
Cla97C01G015470Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G015470Watermelon (Charleston Gray)wcgwmbB315
Cla97C01G015470Watermelon (97103) v1wmwmbB008
Cla97C01G015470Watermelon (97103) v1wmwmbB079
Cla97C01G015470Watermelon (97103) v1wmwmbB234
Cla97C01G015470Wax gourdwgowmbB286
Cla97C01G015470Wax gourdwgowmbB344
Cla97C01G015470Wax gourdwgowmbB403