Cla97C01G014830 (gene) Watermelon (97103) v2

Overview
NameCla97C01G014830
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionRoot meristem growth factor 9-like protein
LocationCla97Chr01 : 28589388 .. 28591037 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCTAAAATCACATGCAACAACCTTCTCCTTGTCTTGTTGCTTCTTTTGTGCTTCATTCCCCTTGCAACCCAAGGTAATCACAAAAATTTATATATATATATTATATTTGCATACAAACCCTTCAACAGTTCTCTATTTTCCCTTTTTGGGTAAGGTTTCTTTTAATTTCGAAGTTTTATCTCTTTATTTTTAGCGGTTACTAGAAATTAGGTCATGGTCGATTCAATATTATTTTCGTGTTAAAGTAAATTATGACATTGTTGGTTGTTTATACTTCGGTTCTTAACTAATTTCACATCAAACAGGATGAGAAAAGCTTTTTTTTTTCTTTTTTTTTATAATTATTAAAGAGAATTCAATTATATTTTAATCATAACAAGCCGTTGTTTGAAGGAGAAAAATTAAGAGATTTAAAAGGGAGAATATTTAGTGTGTATATATAAGTTAATAATGTATATTTTGTATCTATTCTTGATAAAGATTCTTATCTATATTGAAGTTACAAAATACTATAGATCTATCGCAAATAAATTGTGATATTTTACTATTATTTGTAAATATTTTCAACAATTTTATTATTTAAAATAATTTTCCTAAATATTATTTAGGTTTCTGTAATTGAAATAAGTTTATCATTAATTTTATGTTTTGATGTTGTTAATTAATTAGTCTTCTTAATTCCTTACTTAACAAGAAGTTATGATTTTTTAACCAATAAAGTTTAATGATCCACGATGGAAATTTTATGATGTTTAGATTCTAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTCTCCAAACTCCTTATTTGAAAGAACGTTAAGGCTAATTAGCCAATCTATTAGTGATAATAAATAAGACATCGCTTTTATCATCTGGTTTTGTGATATGATTCGATCATCCACTCCTATACCAACCAATTGTCTGAACTAAAAGTTGAAAAGGCAACAACGTTATGGTTTTGGTGCATATCATCTCTCTTGCATCATCCCAAATTCTTTAATTTGTTTTTATTATATATATATATATATATATATATATATATATATATATATATATATATATTCATTTATTCATTCATCGTCACATAATACTATTTTTTTAAAACATTAAGCTAATAAATAACAAACGATTAATTAATTAATTTCTTTTTATGTTGGTCATAAGTTTCCAGTTTTCTTTTTCTTTTTTCTTTTCTTTTTAATGACAATATGTGGAATATGGAGACCGATGTCATGTTAAGTGCTAATTAAATTTCTATAACATAGTAAAAATGTAACTATAAAAAAAATAAAATTTTATTTACTGAAAATTTCAAACACTCCAAATTAAAATAATAATCATCATAATCATTTTACGTTATAGAAATCTTAAAGACTCAAACTACAATTTAACTCGACATAGATCTCTATCTAAAATTAAGTCTAAAACAATAATTTAGGTTATGAATTTGTAATGTTTTTTCTTATAACTATTTTGCAGCTCGAAATTTACATAAAATGAGTTATACAACCATTAAAAGTGAAGTGAGAGATGAAGAGTTGAGTCCTCCAAATGATGATTCGGTATATCATCTTGACTACACTCCACCTAAGAAGAATCGTCCAGTTCATAACTAA

mRNA sequence

ATGGCAGCTAAAATCACATGCAACAACCTTCTCCTTGTCTTGTTGCTTCTTTTGTGCTTCATTCCCCTTGCAACCCAAGCTCGAAATTTACATAAAATGAGTTATACAACCATTAAAAGTGAAGTGAGAGATGAAGAGTTGAGTCCTCCAAATGATGATTCGGTATATCATCTTGACTACACTCCACCTAAGAAGAATCGTCCAGTTCATAACTAA

Coding sequence (CDS)

ATGGCAGCTAAAATCACATGCAACAACCTTCTCCTTGTCTTGTTGCTTCTTTTGTGCTTCATTCCCCTTGCAACCCAAGCTCGAAATTTACATAAAATGAGTTATACAACCATTAAAAGTGAAGTGAGAGATGAAGAGTTGAGTCCTCCAAATGATGATTCGGTATATCATCTTGACTACACTCCACCTAAGAAGAATCGTCCAGTTCATAACTAA

Protein sequence

MAAKITCNNLLLVLLLLLCFIPLATQARNLHKMSYTTIKSEVRDEELSPPNDDSVYHLDYTPPKKNRPVHN
Homology
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BLAST of Cla97C01G014830 vs. NCBI nr
Match: XP_021641792.1 (root meristem growth factor 9 [Hevea brasiliensis])

HSP 1 Score: 56.2 bits (134), Expect = 5.2e-05
Identity = 30/78 (38.46%), Postives = 45/78 (57.69%), Query Frame = 0 

Query: 3  AKITCNNLLLVLLLLLCFIPLATQARNLHKMSYTTIKSEVRDEE---------LSPPNDD 62
          AK++C NLLLV   LLCF+ +  +AR+L    Y     +++D E          +PP+ +
Sbjct: 2  AKVSCKNLLLVAFFLLCFVSVGARARSLRVAKYINEVEKIKDHEDNSFTSKGNGAPPDAE 61

Query: 63 SVYHLDYTPPKKNRPVHN 72
           +  +DYT PKKN P+HN
Sbjct: 62 ELLGMDYTGPKKNPPIHN 79

The following BLAST results are available for this feature:
BLAST of Cla97C01G014830 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_021641792.15.2e-0538.46root meristem growth factor 9 [Hevea brasiliensis][more]
BLAST of Cla97C01G014830 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cla97C01G014830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C01G014830 vs. TAIR10
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008083growth factor activity
Vocabulary: INTERPRO
TermDefinition
IPR039337RGF9
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008083 growth factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G014830.1Cla97C01G014830.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..71
NoneNo IPR availablePANTHERPTHR33743:SF3ROOT MERISTEM GROWTH FACTOR 9coord: 4..71
IPR039337Root meristem growth factor 9PANTHERPTHR33743FAMILY NOT NAMEDcoord: 4..71

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G014830CSPI06G26990Wild cucumber (PI 183967)cpiwmbB433
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G014830Watermelon (97103) v2wmbwmbB008
Cla97C01G014830Silver-seed gourdcarwmbB0239
Cla97C01G014830Silver-seed gourdcarwmbB0839
Cla97C01G014830Cucumber (Gy14) v2cgybwmbB094
Cla97C01G014830Cucumber (Gy14) v2cgybwmbB394
Cla97C01G014830Cucumber (Gy14) v1cgywmbB127
Cla97C01G014830Cucumber (Gy14) v1cgywmbB441
Cla97C01G014830Cucurbita maxima (Rimu)cmawmbB561
Cla97C01G014830Cucurbita maxima (Rimu)cmawmbB603
Cla97C01G014830Cucurbita maxima (Rimu)cmawmbB670
Cla97C01G014830Cucurbita maxima (Rimu)cmawmbB875
Cla97C01G014830Watermelon (97103) v1wmwmbB310
Cla97C01G014830Cucurbita moschata (Rifu)cmowmbB579
Cla97C01G014830Cucurbita moschata (Rifu)cmowmbB642
Cla97C01G014830Cucurbita moschata (Rifu)cmowmbB849
Cla97C01G014830Wild cucumber (PI 183967)cpiwmbB102
Cla97C01G014830Cucumber (Chinese Long) v3cucwmbB104
Cla97C01G014830Cucumber (Chinese Long) v3cucwmbB430
Cla97C01G014830Cucumber (Chinese Long) v2cuwmbB100
Cla97C01G014830Cucumber (Chinese Long) v2cuwmbB412
Cla97C01G014830Bottle gourd (USVL1VR-Ls)lsiwmbB037
Cla97C01G014830Bottle gourd (USVL1VR-Ls)lsiwmbB115
Cla97C01G014830Melon (DHL92) v3.6.1medwmbB073
Cla97C01G014830Melon (DHL92) v3.6.1medwmbB505
Cla97C01G014830Melon (DHL92) v3.5.1mewmbB077
Cla97C01G014830Melon (DHL92) v3.5.1mewmbB513
Cla97C01G014830Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G014830Watermelon (Charleston Gray)wcgwmbB130
Cla97C01G014830Watermelon (97103) v1wmwmbB244
Cla97C01G014830Wax gourdwgowmbB345
Cla97C01G014830Wax gourdwgowmbB399