Cla97C01G011600 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G011600
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Photosystem II CP43 reaction center protein
Location	Cla97Chr01 : 21292946 .. 21294492 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTTAAGGAGAAAAAATGTAACTCAGAGGTAAATCGGTATTTGACCTAGCTGAATTTATGAACAACCTGTGAAGGATTGACTTATCAATGATGGTTATATCAAATGGACACAAATATATCTACAGTGAGGAGAGTGCAACTACGGGCTTTAATGGAGTGTCCCGTTAGTTAACGAATGTTGGTTAACTAGGTTAAAGAGTTTGGCCGGTTAATCTTGGATCGTTGGAGCTCATGATCTGTAGGTCCATTAAGTCCCTCTACTAGCTCATAAATGGACTAAAATCTTAGATAATGTGGTGAATAAGTTTGAATCGTTCAAATCTTGGCTTAAGGAATGAAAGTTAGATATATACGATATATCGGCGTTTAATTACGAATTAAACGTACAAATAAAGTTAATTATAATATTTAAATATAATTTAAATATTAATCATATAAATAGGGATTCATATCGATTTTTTTTAGAAAAATCGGGACAAGTGGGAAAAATAATATTATTTTATTATTTAATATTAAAATAATAATATTTAATTAATTAAATATTAAATTATTTTTTATTTAATTATTTAATTATCTTTTTGAAATTAAAAATCAATTTTAATTCAATTTTGGAAATTCATTAAAAATTGATTTTAAAATTGATTTTTGAAGATTGGATTTTCCCACTAATTAAGCTAGGAGCTTGGTTGTCTTCTTCACAATTAACCAACAAATTAACCATTTTGTGTTGTCAAATTTTGATGCAATTGGATTGCATGTTATTCTTTAATAAATAGAGATGATTTTGACATAAAAATGGTTAAGAATTTTGTGAAATTAAGGGTTAATTTTGCAAAATTCCATCCATTGTTCATCTTCTTCCCAACCTTCATTCTTTCTCAAATTCACCACAATTTTGGATCCCACCATCTAATCTAAGCCTAGAGAATAGTAGAGAAGACTCTTGTGTTGGTCTACAACCAAGTGGTGCTGGAATTCATCAAGAATTGAAGAAGAATTTGGAGCTTCAAGGGTAAGTGTTCTTGAAACTTTGGTTTTTCTTCTTAATTGCATGTTTAATCCTCTAAATTGAGCATCTTAGAGTGAAAATTGATCAAATTAACTTCTGCTGCATGCTCATTAATCCATCATATCTTAACTAAACCATTTGCCTGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCAACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGGATCCGCTCAAGGACCTACTGGTTTAGGTAAATATCTAATGCGTTCTCCGACCGGAGAAGTCATTTTTGGGGGAGAAAAGCTGAGGAAGATAGCACATTTTAGGTGCTATCACATATGGCGATCACTCGCTTCCAGTAAAGATTCAATGCCTTCCGGGAAGACCCCCACAAATACTTAA

mRNA sequence

ATGGCACTTAAGGAGAAAAAATGTAACTCAGAGGTAAATCGTGGTGCTGGAATTCATCAAGAATTGAAGAAGAATTTGGAGCTTCAAGGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCAACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGGATCCGCTCAAGGACCTACTGGTTTAGGTAAATATCTAATGCGTTCTCCGACCGGAGAAGTCATTTTTGGGGGAGAAAAGCTGAGGAAGATAGCACATTTTAGGTGCTATCACATATGGCGATCACTCGCTTCCAGTAAAGATTCAATGCCTTCCGGGAAGACCCCCACAAATACTTAA

Coding sequence (CDS)

ATGGCACTTAAGGAGAAAAAATGTAACTCAGAGGTAAATCGTGGTGCTGGAATTCATCAAGAATTGAAGAAGAATTTGGAGCTTCAAGGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCAACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGGATCCGCTCAAGGACCTACTGGTTTAGGTAAATATCTAATGCGTTCTCCGACCGGAGAAGTCATTTTTGGGGGAGAAAAGCTGAGGAAGATAGCACATTTTAGGTGCTATCACATATGGCGATCACTCGCTTCCAGTAAAGATTCAATGCCTTCCGGGAAGACCCCCACAAATACTTAA

Protein sequence

MALKEKKCNSEVNRGAGIHQELKKNLELQGLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGEKLRKIAHFRCYHIWRSLASSKDSMPSGKTPTNT

Homology

[Close]

BLAST of Cla97C01G011600 vs. NCBI nr
Match: AAO13257.1 (photosystem II CP43 protein, partial (chloroplast) [Austrobaileya scandens])

HSP 1 Score: 171.4 bits (433), Expect = 2.2e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. NCBI nr
Match: AAQ09499.1 (photosystem II cp43 protein, partial (chloroplast) [Saruma henryi])

HSP 1 Score: 171.4 bits (433), Expect = 2.2e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. NCBI nr
Match: AAQ09479.1 (photosystem II cp43 protein, partial (chloroplast) [Houttuynia cordata])

HSP 1 Score: 171.4 bits (433), Expect = 2.2e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. NCBI nr
Match: AAQ09463.1 (photosystem II cp43 protein, partial (chloroplast) [Aristolochia macrophylla])

HSP 1 Score: 171.4 bits (433), Expect = 2.2e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. NCBI nr
Match: AAQ09487.1 (photosystem II cp43 protein, partial (chloroplast) [Pachysandra terminalis])

HSP 1 Score: 171.4 bits (433), Expect = 2.2e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. TrEMBL
Match: tr|H6CSR4|H6CSR4_ORYRU (Photosystem II CP43 reaction center protein OS=Oryza rufipogon OX=4529 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.5e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. TrEMBL
Match: tr|A0A125RJI1|A0A125RJI1_9GENT (Photosystem II CP43 reaction center protein OS=Cynanchum auriculatum OX=157409 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.5e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. TrEMBL
Match: tr|A0A059P214|A0A059P214_9GENT (Photosystem II CP43 reaction center protein OS=Asclepias coulteri OX=659948 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.5e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 264 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 323

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 324 GLGKYLMRSPTGEVIFGGETMR 345

[Close]

BLAST of Cla97C01G011600 vs. TrEMBL
Match: tr|V9P8M3|V9P8M3_9ROSI (Photosystem II CP43 reaction center protein OS=Hypseocharis bilobata OX=253189 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.5e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. TrEMBL
Match: tr|A0A223A8D9|A0A223A8D9_9ROSA (Photosystem II CP43 reaction center protein OS=Trema orientalis OX=63057 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.5e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. Swiss-Prot
Match: sp|A6MM32|PSBC_BUXMI (Photosystem II CP43 reaction center protein OS=Buxus microphylla OX=153571 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.2e-42
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. Swiss-Prot
Match: sp|Q7YJX6|PSBC_CALFG (Photosystem II CP43 reaction center protein OS=Calycanthus floridus var. glaucus OX=212734 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.2e-42
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. Swiss-Prot
Match: sp|B1A931|PSBC_CARPA (Photosystem II CP43 reaction center protein OS=Carica papaya OX=3649 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.2e-42
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. Swiss-Prot
Match: sp|A6MMB8|PSBC_CHLSC (Photosystem II CP43 reaction center protein OS=Chloranthus spicatus OX=13006 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.2e-42
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. Swiss-Prot
Match: sp|A6MMK3|PSBC_DIOEL (Photosystem II CP43 reaction center protein OS=Dioscorea elephantipes OX=145284 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.2e-42
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. TAIR10
Match: ATCG00280.1 (photosystem II reaction center protein C)

HSP 1 Score: 166.0 bits (419), Expect = 1.7e-41
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           L ALSV GFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVCGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

The following BLAST results are available for this feature:

BLAST of Cla97C01G011600 vs. NCBI nr


Match Name	E-value	Identity	Description
AAO13257.1	2.2e-39	97.56	photosystem II CP43 protein, partial (chloroplast) [Austrobaileya scandens]	[more]
AAQ09499.1	2.2e-39	97.56	photosystem II cp43 protein, partial (chloroplast) [Saruma henryi]	[more]
AAQ09479.1	2.2e-39	97.56	photosystem II cp43 protein, partial (chloroplast) [Houttuynia cordata]	[more]
AAQ09463.1	2.2e-39	97.56	photosystem II cp43 protein, partial (chloroplast) [Aristolochia macrophylla]	[more]
AAQ09487.1	2.2e-39	97.56	photosystem II cp43 protein, partial (chloroplast) [Pachysandra terminalis]	[more]

BLAST of Cla97C01G011600 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|H6CSR4\|H6CSR4_ORYRU	1.5e-39	97.56	Photosystem II CP43 reaction center protein OS=Oryza rufipogon OX=4529 GN=psbC P...	[more]
tr\|A0A125RJI1\|A0A125RJI1_9GENT	1.5e-39	97.56	Photosystem II CP43 reaction center protein OS=Cynanchum auriculatum OX=157409 G...	[more]
tr\|A0A059P214\|A0A059P214_9GENT	1.5e-39	97.56	Photosystem II CP43 reaction center protein OS=Asclepias coulteri OX=659948 GN=p...	[more]
tr\|V9P8M3\|V9P8M3_9ROSI	1.5e-39	97.56	Photosystem II CP43 reaction center protein OS=Hypseocharis bilobata OX=253189 G...	[more]
tr\|A0A223A8D9\|A0A223A8D9_9ROSA	1.5e-39	97.56	Photosystem II CP43 reaction center protein OS=Trema orientalis OX=63057 GN=psbC...	[more]

BLAST of Cla97C01G011600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A6MM32\|PSBC_BUXMI	7.2e-42	97.56	Photosystem II CP43 reaction center protein OS=Buxus microphylla OX=153571 GN=ps...	[more]
sp\|Q7YJX6\|PSBC_CALFG	7.2e-42	97.56	Photosystem II CP43 reaction center protein OS=Calycanthus floridus var. glaucus...	[more]
sp\|B1A931\|PSBC_CARPA	7.2e-42	97.56	Photosystem II CP43 reaction center protein OS=Carica papaya OX=3649 GN=psbC PE=...	[more]
sp\|A6MMB8\|PSBC_CHLSC	7.2e-42	97.56	Photosystem II CP43 reaction center protein OS=Chloranthus spicatus OX=13006 GN=...	[more]
sp\|A6MMK3\|PSBC_DIOEL	7.2e-42	97.56	Photosystem II CP43 reaction center protein OS=Dioscorea elephantipes OX=145284 ...	[more]

BLAST of Cla97C01G011600 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00280.1	1.7e-41	95.12	photosystem II reaction center protein C	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0009521	photosystem

Vocabulary: **Biological Process**
Term	Definition
GO:0009767	photosynthetic electron transport chain
GO:0019684	photosynthesis, light reaction

Vocabulary: **Molecular Function**
Term	Definition
GO:0016168	chlorophyll binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036001	PS_II_antenna-like_sf
IPR000932	PS_antenna-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009536	plastid
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G011600.1	Cla97C01G011600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.10.670		coord: 59..124 e-value: 1.5E-28 score: 100.5
None	No IPR available	PANTHER	PTHR33180:SF4	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 31..113
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 30..116 e-value: 1.9E-25 score: 89.4
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	FAMILY NOT NAMED	coord: 31..113
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	SSF161077	Photosystem II antenna protein-like	coord: 30..116

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G011600	Watermelon (97103) v2	wmbwmbB012
Cla97C01G011600	Silver-seed gourd	carwmbB0000
Cla97C01G011600	Silver-seed gourd	carwmbB0964
Cla97C01G011600	Cucumber (Gy14) v2	cgybwmbB009
Cla97C01G011600	Cucumber (Gy14) v1	cgywmbB083
Cla97C01G011600	Cucumber (Gy14) v1	cgywmbB373
Cla97C01G011600	Cucurbita maxima (Rimu)	cmawmbB211
Cla97C01G011600	Cucurbita maxima (Rimu)	cmawmbB215
Cla97C01G011600	Cucurbita maxima (Rimu)	cmawmbB394
Cla97C01G011600	Cucurbita maxima (Rimu)	cmawmbB602
Cla97C01G011600	Cucurbita moschata (Rifu)	cmowmbB386
Cla97C01G011600	Cucurbita moschata (Rifu)	cmowmbB578
Cla97C01G011600	Cucurbita moschata (Rifu)	cmowmbB811
Cla97C01G011600	Wild cucumber (PI 183967)	cpiwmbB009
Cla97C01G011600	Wild cucumber (PI 183967)	cpiwmbB438
Cla97C01G011600	Cucumber (Chinese Long) v3	cucwmbB008
Cla97C01G011600	Cucumber (Chinese Long) v2	cuwmbB009
Cla97C01G011600	Bottle gourd (USVL1VR-Ls)	lsiwmbB033
Cla97C01G011600	Bottle gourd (USVL1VR-Ls)	lsiwmbB114
Cla97C01G011600	Bottle gourd (USVL1VR-Ls)	lsiwmbB217
Cla97C01G011600	Melon (DHL92) v3.6.1	medwmbB132
Cla97C01G011600	Melon (DHL92) v3.5.1	mewmbB143
Cla97C01G011600	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G011600	Watermelon (Charleston Gray)	wcgwmbB131
Cla97C01G011600	Watermelon (97103) v1	wmwmbB241
Cla97C01G011600	Watermelon (97103) v1	wmwmbB243
Cla97C01G011600	Watermelon (97103) v1	wmwmbB250
Cla97C01G011600	Watermelon (97103) v1	wmwmbB309
Cla97C01G011600	Wax gourd	wgowmbB451