Cla97C01G011220 (gene) Watermelon (97103) v2

Overview
NameCla97C01G011220
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC101497165
LocationCla97Chr01 : 18388822 .. 18389331 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATACGCTGAACTCTTGCCACAATTACTGAAGAATCAACAAGTCGCCATTGTGCCTCAGGATCCCATACAACCACCATATCCTAAGTGGTACGACCCTAACGCGAGGTGCGAATACCACGCGGGGGCAATAGGGCACTCTACTGAAAATTGTTATCCTCTGAAGGCTAAAGTACAAAGTTTGGTCAAAGCTGAGTGGTTGAAGTTCAAGAAGACAAGAAAAGAGCTAGATGTCAATCAAAATCCTCTCCCGAATCATGAAAATCCTATTGTAAATGTTATTGACTCAAATGTGGAATGTTGTAAGAACAGTGTGCATGATTTGACTACACCAATGAAGACTCTTTTTCAAGTTCTTCAAAAAGCTGGGTATCTCTCCCCAAGAGCTGACAATAATATTGTGAAAGTGATGGATTGTGTCGATGAGAAAGAATGCTTATTTCATCCTGGGGTAATTGGGCATCCCACTGAAGATTGCATAGAGTTTAAGAACGAAGTGCAAAATTGA

mRNA sequence

ATGTCATACGCTGAACTCTTGCCACAATTACTGAAGAATCAACAAGTCGCCATTGTGCCTCAGGATCCCATACAACCACCATATCCTAAGTGGTACGACCCTAACGCGAGGTGCGAATACCACGCGGGGGCAATAGGGCACTCTACTGAAAATTGTTATCCTCTGAAGGCTAAAGTACAAAGTTTGGTCAAAGCTGAGTGGTTGAAGTTCAAGAAGACAAGAAAAGAGCTAGATGTCAATCAAAATCCTCTCCCGAATCATGAAAATCCTATTGTAAATGTTATTGACTCAAATGTGGAATGTTGTAAGAACAGTGTGCATGATTTGACTACACCAATGAAGACTCTTTTTCAAGTTCTTCAAAAAGCTGGGTATCTCTCCCCAAGAGCTGACAATAATATTGTGAAAGTGATGGATTGTGTCGATGAGAAAGAATGCTTATTTCATCCTGGGGTAATTGGGCATCCCACTGAAGATTGCATAGAGTTTAAGAACGAAGTGCAAAATTGA

Coding sequence (CDS)

ATGTCATACGCTGAACTCTTGCCACAATTACTGAAGAATCAACAAGTCGCCATTGTGCCTCAGGATCCCATACAACCACCATATCCTAAGTGGTACGACCCTAACGCGAGGTGCGAATACCACGCGGGGGCAATAGGGCACTCTACTGAAAATTGTTATCCTCTGAAGGCTAAAGTACAAAGTTTGGTCAAAGCTGAGTGGTTGAAGTTCAAGAAGACAAGAAAAGAGCTAGATGTCAATCAAAATCCTCTCCCGAATCATGAAAATCCTATTGTAAATGTTATTGACTCAAATGTGGAATGTTGTAAGAACAGTGTGCATGATTTGACTACACCAATGAAGACTCTTTTTCAAGTTCTTCAAAAAGCTGGGTATCTCTCCCCAAGAGCTGACAATAATATTGTGAAAGTGATGGATTGTGTCGATGAGAAAGAATGCTTATTTCATCCTGGGGTAATTGGGCATCCCACTGAAGATTGCATAGAGTTTAAGAACGAAGTGCAAAATTGA

Protein sequence

MSYAELLPQLLKNQQVAIVPQDPIQPPYPKWYDPNARCEYHAGAIGHSTENCYPLKAKVQSLVKAEWLKFKKTRKELDVNQNPLPNHENPIVNVIDSNVECCKNSVHDLTTPMKTLFQVLQKAGYLSPRADNNIVKVMDCVDEKECLFHPGVIGHPTEDCIEFKNEVQN
Homology
[Close]
BLAST of Cla97C01G011220 vs. NCBI nr
Match: XP_016903339.1 (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])

HSP 1 Score: 242.7 bits (618), Expect = 9.3e-61
Identity = 110/164 (67.07%), Postives = 129/164 (78.66%), Query Frame = 0 

Query: 5   ELLPQLLKNQQVAIVPQDPIQPPYPKWYDPNARCEYHAGAIGHSTENCYPLKAKVQSLVK 64
           E LPQLLK+ QVAIVPQ+P+QPPYPKWYDPN +CEYH G +GHSTENC+PLKAKVQSLVK
Sbjct: 364 EFLPQLLKSHQVAIVPQEPLQPPYPKWYDPNVKCEYHVGIVGHSTENCFPLKAKVQSLVK 423

Query: 65  AEWLKFKKTRKELDVNQNPLPNHENPIVNVIDSNVECCKNSVHDLTTPMKTLFQVLQKAG 124
           A WLKFKKT +E DVNQNPLPNHE P +N++D   +  KN V D+TT M TLFQ+L +AG
Sbjct: 424 AGWLKFKKTEEEFDVNQNPLPNHEGPAINIVDIFTKRYKNKVCDVTTSMNTLFQILSRAG 483

Query: 125 YLSPRADNNIVKVMDCVDEKECLFHPGVIGHPTEDCIEFKNEVQ 169
           YLSPR +N+      C +EK+CLFHP +  H  EDC E KNEVQ
Sbjct: 484 YLSPRFNNDEGVKFGCANEKQCLFHPEIDDHFIEDCCEPKNEVQ 527

[Close]
BLAST of Cla97C01G011220 vs. NCBI nr
Match: XP_016902319.1 (PREDICTED: uncharacterized protein LOC107991629 [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 1.4e-45
Identity = 87/168 (51.79%), Postives = 120/168 (71.43%), Query Frame = 0 

Query: 1   MSYAELLPQLLKNQQVAIVPQDPIQPPYPKWYDPNARCEYHAGAIGHSTENCYPLKAKVQ 60
           ++Y ELLPQL++N+Q+A +P  PI  PYPKWYD NARCEYHAG  GHS ENC  L+ KVQ
Sbjct: 160 ITYKELLPQLIQNRQLAPIPMIPIPSPYPKWYDSNARCEYHAGGAGHSNENCLALRRKVQ 219

Query: 61  SLVKAEWLKFKKTRKELDVNQNPLPNHENPIVNVIDSNVECCKNSVHDLTTPMKTLFQVL 120
           SL+ A  L FKK+ ++ +VN+NP PNHEN  VNV+D  VE CKN VH++  PM+ LF+ L
Sbjct: 220 SLINARCLSFKKSSEKPNVNENPRPNHENTKVNVVDRLVEKCKNEVHEIMMPMEELFKGL 279

Query: 121 QKAGYLSPRADNNIVKVMDCVDEKECLFHPGVIGHPTEDCIEFKNEVQ 169
            +AGY+S +  +  +K     + + C+FH GV+GH  + C +F+++VQ
Sbjct: 280 FEAGYVSQKYLDPNIKYEGYDESRHCIFHQGVVGHVVQQCKKFRSKVQ 327

[Close]
BLAST of Cla97C01G011220 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 178.3 bits (451), Expect = 2.1e-41
Identity = 88/168 (52.38%), Postives = 111/168 (66.07%), Query Frame = 0 

Query: 1   MSYAELLPQLLKNQQVAIVPQDPIQPPYPKWYDPNARCEYHAGAIGHSTENCYPLKAKVQ 60
           M+Y ELLPQL +N Q+A VP DPIQPPYP+WYD NARC+YHAGAIGHSTENC  LK +VQ
Sbjct: 353 MTYTELLPQLFQNNQLAPVPVDPIQPPYPRWYDTNARCDYHAGAIGHSTENCTALKYRVQ 412

Query: 61  SLVKAEWLKFKKTRKELDVNQNPLPNHENPIVNVIDSNVECCKNSVHDLTTPMKTLFQVL 120
           +L+KA WL FKK     DV++NPLPNH+N  +N I+      K+ V D+ TPM  LF++L
Sbjct: 413 ALIKAGWLNFKKENGP-DVSKNPLPNHQNVQINAIECQEIESKSKVADIRTPMVELFEIL 472

Query: 121 QKAGYLSPRADNNIVKVMDCVDEKECLFHPGVIGHPTEDCIEFKNEVQ 169
             +GY+S       +K     +   C FH G  GH  E C  F+ +VQ
Sbjct: 473 LGSGYVSVEYLCPNLKYKGYDESLTCPFHAGAKGHSLEQCNSFRMKVQ 519

[Close]
BLAST of Cla97C01G011220 vs. NCBI nr
Match: XP_016903535.1 (PREDICTED: uncharacterized protein LOC103504025 [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 9.0e-40
Identity = 79/164 (48.17%), Postives = 113/164 (68.90%), Query Frame = 0 

Query: 5   ELLPQLLKNQQVAIVPQDPIQPPYPKWYDPNARCEYHAGAIGHSTENCYPLKAKVQSLVK 64
           ++L   L   ++A +   PIQPPYPKWYD NARC+YHAG +GHST+NC  LK KV+SL+ 
Sbjct: 132 QILLDHLYRVKLAPILMIPIQPPYPKWYDLNARCDYHAGGMGHSTKNCLALKRKVKSLIN 191

Query: 65  AEWLKFKKTRKELDVNQNPLPNHENPIVNVIDSNVECCKNSVHDLTTPMKTLFQVLQKAG 124
             WL FKK+ ++ +VN+NPLP+HENP VNV+D+ VE CKN VH++  PM+ LF+ L +AG
Sbjct: 192 VGWLSFKKSGEKPNVNENPLPDHENPKVNVVDNLVEKCKNEVHEIVMPMEALFEGLFEAG 251

Query: 125 YLSPRADNNIVKVMDCVDEKECLFHPGVIGHPTEDCIEFKNEVQ 169
           Y+S    +  ++     + + C FH GV  H  + C +F+++VQ
Sbjct: 252 YVSHEYLDPNIRYERYDESRHCRFHQGVADHVVQQCQKFRSKVQ 295

[Close]
BLAST of Cla97C01G011220 vs. NCBI nr
Match: XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])

HSP 1 Score: 170.6 bits (431), Expect = 4.5e-39
Identity = 84/168 (50.00%), Postives = 108/168 (64.29%), Query Frame = 0 

Query: 1   MSYAELLPQLLKNQQVAIVPQDPIQPPYPKWYDPNARCEYHAGAIGHSTENCYPLKAKVQ 60
           M+Y ELLPQL +N Q+A VP DPIQPPYP WYD N RC+YHAGAIGHSTENC  LK +VQ
Sbjct: 455 MTYTELLPQLFQNNQLAPVPVDPIQPPYPGWYDANXRCDYHAGAIGHSTENCTALKYRVQ 514

Query: 61  SLVKAEWLKFKKTRKELDVNQNPLPNHENPIVNVIDSNVECCKNSVHDLTTPMKTLFQVL 120
           +L+KA  L FKK     DV  NPLPNH+N  +N ++      ++ V ++TTPM+ LF++L
Sbjct: 515 ALIKAGXLTFKKENXP-DVKNNPLPNHKNVQINAVECQGIESRSKVSEITTPMQXLFEIL 574

Query: 121 QKAGYLSPRADNNIVKVMDCVDEKECLFHPGVIGHPTEDCIEFKNEVQ 169
              GY+S       ++     +   C +H G  GHP E C  FK +VQ
Sbjct: 575 WXHGYMSMEHLCPDIRCERYDENLTCPYHAGARGHPLEQCSCFKEKVQ 621

[Close]
BLAST of Cla97C01G011220 vs. TrEMBL
Match: tr|A0A1S4E534|A0A1S4E534_CUCME (uncharacterized protein LOC103502838 OS=Cucumis melo OX=3656 GN=LOC103502838 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 6.1e-61
Identity = 110/164 (67.07%), Postives = 129/164 (78.66%), Query Frame = 0 

Query: 5   ELLPQLLKNQQVAIVPQDPIQPPYPKWYDPNARCEYHAGAIGHSTENCYPLKAKVQSLVK 64
           E LPQLLK+ QVAIVPQ+P+QPPYPKWYDPN +CEYH G +GHSTENC+PLKAKVQSLVK
Sbjct: 364 EFLPQLLKSHQVAIVPQEPLQPPYPKWYDPNVKCEYHVGIVGHSTENCFPLKAKVQSLVK 423

Query: 65  AEWLKFKKTRKELDVNQNPLPNHENPIVNVIDSNVECCKNSVHDLTTPMKTLFQVLQKAG 124
           A WLKFKKT +E DVNQNPLPNHE P +N++D   +  KN V D+TT M TLFQ+L +AG
Sbjct: 424 AGWLKFKKTEEEFDVNQNPLPNHEGPAINIVDIFTKRYKNKVCDVTTSMNTLFQILSRAG 483

Query: 125 YLSPRADNNIVKVMDCVDEKECLFHPGVIGHPTEDCIEFKNEVQ 169
           YLSPR +N+      C +EK+CLFHP +  H  EDC E KNEVQ
Sbjct: 484 YLSPRFNNDEGVKFGCANEKQCLFHPEIDDHFIEDCCEPKNEVQ 527

[Close]
BLAST of Cla97C01G011220 vs. TrEMBL
Match: tr|A0A1S4E260|A0A1S4E260_CUCME (uncharacterized protein LOC107991629 OS=Cucumis melo OX=3656 GN=LOC107991629 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 9.5e-46
Identity = 87/168 (51.79%), Postives = 120/168 (71.43%), Query Frame = 0 

Query: 1   MSYAELLPQLLKNQQVAIVPQDPIQPPYPKWYDPNARCEYHAGAIGHSTENCYPLKAKVQ 60
           ++Y ELLPQL++N+Q+A +P  PI  PYPKWYD NARCEYHAG  GHS ENC  L+ KVQ
Sbjct: 160 ITYKELLPQLIQNRQLAPIPMIPIPSPYPKWYDSNARCEYHAGGAGHSNENCLALRRKVQ 219

Query: 61  SLVKAEWLKFKKTRKELDVNQNPLPNHENPIVNVIDSNVECCKNSVHDLTTPMKTLFQVL 120
           SL+ A  L FKK+ ++ +VN+NP PNHEN  VNV+D  VE CKN VH++  PM+ LF+ L
Sbjct: 220 SLINARCLSFKKSSEKPNVNENPRPNHENTKVNVVDRLVEKCKNEVHEIMMPMEELFKGL 279

Query: 121 QKAGYLSPRADNNIVKVMDCVDEKECLFHPGVIGHPTEDCIEFKNEVQ 169
            +AGY+S +  +  +K     + + C+FH GV+GH  + C +F+++VQ
Sbjct: 280 FEAGYVSQKYLDPNIKYEGYDESRHCIFHQGVVGHVVQQCKKFRSKVQ 327

[Close]
BLAST of Cla97C01G011220 vs. TrEMBL
Match: tr|A0A1S4E6E2|A0A1S4E6E2_CUCME (uncharacterized protein LOC103504025 OS=Cucumis melo OX=3656 GN=LOC103504025 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.0e-40
Identity = 79/164 (48.17%), Postives = 113/164 (68.90%), Query Frame = 0 

Query: 5   ELLPQLLKNQQVAIVPQDPIQPPYPKWYDPNARCEYHAGAIGHSTENCYPLKAKVQSLVK 64
           ++L   L   ++A +   PIQPPYPKWYD NARC+YHAG +GHST+NC  LK KV+SL+ 
Sbjct: 132 QILLDHLYRVKLAPILMIPIQPPYPKWYDLNARCDYHAGGMGHSTKNCLALKRKVKSLIN 191

Query: 65  AEWLKFKKTRKELDVNQNPLPNHENPIVNVIDSNVECCKNSVHDLTTPMKTLFQVLQKAG 124
             WL FKK+ ++ +VN+NPLP+HENP VNV+D+ VE CKN VH++  PM+ LF+ L +AG
Sbjct: 192 VGWLSFKKSGEKPNVNENPLPDHENPKVNVVDNLVEKCKNEVHEIVMPMEALFEGLFEAG 251

Query: 125 YLSPRADNNIVKVMDCVDEKECLFHPGVIGHPTEDCIEFKNEVQ 169
           Y+S    +  ++     + + C FH GV  H  + C +F+++VQ
Sbjct: 252 YVSHEYLDPNIRYERYDESRHCRFHQGVADHVVQQCQKFRSKVQ 295

[Close]
BLAST of Cla97C01G011220 vs. TrEMBL
Match: tr|A0A061FBD9|A0A061FBD9_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_033215 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.6e-32
Identity = 73/167 (43.71%), Postives = 106/167 (63.47%), Query Frame = 0 

Query: 3   YAELLPQLLKNQQVAIVPQDPIQPPYPKWYDPNARCEYHAGAIGHSTENCYPLKAKVQSL 62
           Y  LLPQL++N+ +A  P +P++PP+PKWYDPNA C+YH G  GHSTENC  LK KVQ+L
Sbjct: 400 YTTLLPQLIENRLLARTPLEPLRPPFPKWYDPNAHCDYHFGIQGHSTENCTALKHKVQAL 459

Query: 63  VKAEWLKFKKTRKELDVNQNPLPNHENPIVNVI-DSNVECCKNSVHDLTTPMKTLFQVLQ 122
           +KA  L F K +   +V+ NPLPNH  P VN I +  +   K +V+++ TPM  +F+ L 
Sbjct: 460 IKAGLLNFAK-KDNSNVDGNPLPNHGGPTVNAIHERMIRRVKKNVNEIRTPMDRVFEALS 519

Query: 123 KAGYLSPRADNNIVKVMDCVDEKECLFHPGVIGHPTEDCIEFKNEVQ 169
           K   ++P+     +K +       C FH GV+GH  ++C  F+ ++Q
Sbjct: 520 KIKAITPKPIE--IKEVGHDLTLSCKFHMGVVGHSIQNCDGFRLKLQ 563

[Close]
BLAST of Cla97C01G011220 vs. TrEMBL
Match: tr|A0A061ELG5|A0A061ELG5_THECC (Gag-pro-like protein OS=Theobroma cacao OX=3641 GN=TCM_020601 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 8.6e-31
Identity = 71/167 (42.51%), Postives = 99/167 (59.28%), Query Frame = 0 

Query: 3   YAELLPQLLKNQQVAIVPQDPIQPPYPKWYDPNARCEYHAGAIGHSTENCYPLKAKVQSL 62
           Y  LLPQL++N+ +A  P +P++PP+PKWYDPNA C+YH G  GHSTENC  LK KVQ+L
Sbjct: 355 YTTLLPQLIENRLLARTPLEPLRPPFPKWYDPNAHCDYHFGIQGHSTENCTTLKHKVQAL 414

Query: 63  VKAEWLKFKKTRKELDVNQNPLPNHENPIVNVI-DSNVECCKNSVHDLTTPMKTLFQVLQ 122
           +KA  L F K +    V+ NPLPNH    VN I +  +   K  + ++ TPM  +F+ L 
Sbjct: 415 IKAGLLNFAK-KDNSSVDGNPLPNHGRSTVNAIHEGMIRRVKKGIDEIQTPMDKVFEALS 474

Query: 123 KAGYLSPRADNNIVKVMDCVDEKECLFHPGVIGHPTEDCIEFKNEVQ 169
           K   ++P   +      D      C FH G IGH  ++C  F+ ++Q
Sbjct: 475 KINAITPEPIDTEELGHDLA--YSCKFHMGAIGHSIQNCDSFRRKLQ 518

The following BLAST results are available for this feature:
BLAST of Cla97C01G011220 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016903339.19.3e-6167.07PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo][more]
XP_016902319.11.4e-4551.79PREDICTED: uncharacterized protein LOC107991629 [Cucumis melo][more]
XP_022158986.12.1e-4152.38LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia][more]
XP_016903535.19.0e-4048.17PREDICTED: uncharacterized protein LOC103504025 [Cucumis melo][more]
XP_022155098.14.5e-3950.00LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch... [more]
BLAST of Cla97C01G011220 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E534|A0A1S4E534_CUCME6.1e-6167.07uncharacterized protein LOC103502838 OS=Cucumis melo OX=3656 GN=LOC103502838 PE=... [more]
tr|A0A1S4E260|A0A1S4E260_CUCME9.5e-4651.79uncharacterized protein LOC107991629 OS=Cucumis melo OX=3656 GN=LOC107991629 PE=... [more]
tr|A0A1S4E6E2|A0A1S4E6E2_CUCME6.0e-4048.17uncharacterized protein LOC103504025 OS=Cucumis melo OX=3656 GN=LOC103504025 PE=... [more]
tr|A0A061FBD9|A0A061FBD9_THECC4.6e-3243.71Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_033215 PE=4 SV=1[more]
tr|A0A061ELG5|A0A061ELG5_THECC8.6e-3142.51Gag-pro-like protein OS=Theobroma cacao OX=3641 GN=TCM_020601 PE=4 SV=1[more]
BLAST of Cla97C01G011220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C01G011220 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G011220.1Cla97C01G011220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G011220Wax gourdwgowmbB508
Cla97C01G011220Silver-seed gourdcarwmbB0000
Cla97C01G011220Cucumber (Gy14) v2cgybwmbB009
Cla97C01G011220Cucumber (Gy14) v1cgywmbB557
Cla97C01G011220Cucumber (Gy14) v1cgywmbB558
Cla97C01G011220Cucurbita maxima (Rimu)cmawmbB208
Cla97C01G011220Cucurbita maxima (Rimu)cmawmbB394
Cla97C01G011220Cucurbita moschata (Rifu)cmowmbB192
Cla97C01G011220Cucurbita moschata (Rifu)cmowmbB811
Cla97C01G011220Wild cucumber (PI 183967)cpiwmbB009
Cla97C01G011220Wild cucumber (PI 183967)cpiwmbB438
Cla97C01G011220Cucumber (Chinese Long) v3cucwmbB008
Cla97C01G011220Cucumber (Chinese Long) v2cuwmbB009
Cla97C01G011220Bottle gourd (USVL1VR-Ls)lsiwmbB114
Cla97C01G011220Bottle gourd (USVL1VR-Ls)lsiwmbB153
Cla97C01G011220Melon (DHL92) v3.6.1medwmbB132
Cla97C01G011220Melon (DHL92) v3.5.1mewmbB136
Cla97C01G011220Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G011220Watermelon (97103) v1wmwmbB246