Cla97C01G011020 (gene) Watermelon (97103) v2

Overview
NameCla97C01G011020
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCla97Chr01 : 17734507 .. 17735097 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGTGGCAAGGCTTGTCCCTTCAATTGTTACCTATAATCTTCTTATTGATGGATGGTGCAAAAGTGGTGATATTGATCAGGCCATCCTTCTTCTTTCCAAAATGAATGAAGAGAACAGGGACCCAACCATCATCACTTACACGACTTTGATTGATGGATGTTGCAATTCTGGAAGGCCTGACGATGCCGAAATGCTTTGGAATGAAATGCAGCAAAAAGGTTGCTCCCCAAACAGGATCGCTTATATGGCAATTGTACACGGCCTTTGCAAGTGTGGAAGGCCTGATGAAGCTTTAGTTTATTACCACAGGATGGAAGAAAAGGAAATGAAACCTGACAGTTATGTCTCTGTTGCATTGATTGATGCTTTCATATCAAAACACCACTTTTTCATGGCTCTTCACATATTGAAGGAGACAATAGAGAAAGGAAACATTCCTGATCAGTCTGACAAGAACTATGTAATCGTAAGAGATGCCATCTTTAAATTGTCTGAAGACGAACAAACTGGCTTGGGAGTTAAATCTCTTATTGAAAAGGGCAGCATTCCGACGATTAGTGTTTCATGTTTGAGGGGCCAAAGTTGA

mRNA sequence

ATGATAGTGGCAAGGCTTGTCCCTTCAATTGTTACCTATAATCTTCTTATTGATGGATGGTGCAAAAGTGGTGATATTGATCAGGCCATCCTTCTTCTTTCCAAAATGAATGAAGAGAACAGGGACCCAACCATCATCACTTACACGACTTTGATTGATGGATGTTGCAATTCTGGAAGGCCTGACGATGCCGAAATGCTTTGGAATGAAATGCAGCAAAAAGGTTGCTCCCCAAACAGGATCGCTTATATGGCAATTGTACACGGCCTTTGCAAGTGTGGAAGGCCTGATGAAGCTTTAGTTTATTACCACAGGATGGAAGAAAAGGAAATGAAACCTGACAGTTATGTCTCTGTTGCATTGATTGATGCTTTCATATCAAAACACCACTTTTTCATGGCTCTTCACATATTGAAGGAGACAATAGAGAAAGGAAACATTCCTGATCAGTCTGACAAGAACTATGTAATCGTAAGAGATGCCATCTTTAAATTGTCTGAAGACGAACAAACTGGCTTGGGAGTTAAATCTCTTATTGAAAAGGGCAGCATTCCGACGATTAGTGTTTCATGTTTGAGGGGCCAAAGTTGA

Coding sequence (CDS)

ATGATAGTGGCAAGGCTTGTCCCTTCAATTGTTACCTATAATCTTCTTATTGATGGATGGTGCAAAAGTGGTGATATTGATCAGGCCATCCTTCTTCTTTCCAAAATGAATGAAGAGAACAGGGACCCAACCATCATCACTTACACGACTTTGATTGATGGATGTTGCAATTCTGGAAGGCCTGACGATGCCGAAATGCTTTGGAATGAAATGCAGCAAAAAGGTTGCTCCCCAAACAGGATCGCTTATATGGCAATTGTACACGGCCTTTGCAAGTGTGGAAGGCCTGATGAAGCTTTAGTTTATTACCACAGGATGGAAGAAAAGGAAATGAAACCTGACAGTTATGTCTCTGTTGCATTGATTGATGCTTTCATATCAAAACACCACTTTTTCATGGCTCTTCACATATTGAAGGAGACAATAGAGAAAGGAAACATTCCTGATCAGTCTGACAAGAACTATGTAATCGTAAGAGATGCCATCTTTAAATTGTCTGAAGACGAACAAACTGGCTTGGGAGTTAAATCTCTTATTGAAAAGGGCAGCATTCCGACGATTAGTGTTTCATGTTTGAGGGGCCAAAGTTGA

Protein sequence

MIVARLVPSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGRPDDAEMLWNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVALIDAFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIEKGSIPTISVSCLRGQS
Homology
[Close]
BLAST of Cla97C01G011020 vs. NCBI nr
Match: XP_008452421.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 6.2e-24
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 0 

Query: 124 AFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIEKGS 183
           AFISKH+F MA H+LKETIEKGNIP+ +DKNYV +RDAIFKLSEDEQTGLGVKSLIEKG 
Sbjct: 810 AFISKHNFSMAFHVLKETIEKGNIPNPTDKNYVTIRDAIFKLSEDEQTGLGVKSLIEKGH 869

Query: 184 IPTISVSCL 193
           IPTI VSCL
Sbjct: 870 IPTIGVSCL 878

[Close]
BLAST of Cla97C01G011020 vs. NCBI nr
Match: KGN49602.1 (hypothetical protein Csa_5G021350 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 3.4e-22
Identity = 56/69 (81.16%), Postives = 63/69 (91.30%), Query Frame = 0 

Query: 124 AFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIEKGS 183
           AFISKH+F MA +ILKETIEKGNIPD +DKNYV ++DAIFKLS+DEQTGL VK+LIEKG 
Sbjct: 779 AFISKHNFSMAFNILKETIEKGNIPDPTDKNYVTIKDAIFKLSKDEQTGLEVKALIEKGR 838

Query: 184 IPTISVSCL 193
           IPTISVSCL
Sbjct: 839 IPTISVSCL 847

[Close]
BLAST of Cla97C01G011020 vs. NCBI nr
Match: XP_011654469.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis sativus] >XP_011654470.1 PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis sativus] >XP_011654471.1 PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 3.4e-22
Identity = 56/69 (81.16%), Postives = 63/69 (91.30%), Query Frame = 0 

Query: 124 AFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIEKGS 183
           AFISKH+F MA +ILKETIEKGNIPD +DKNYV ++DAIFKLS+DEQTGL VK+LIEKG 
Sbjct: 789 AFISKHNFSMAFNILKETIEKGNIPDPTDKNYVTIKDAIFKLSKDEQTGLEVKALIEKGR 848

Query: 184 IPTISVSCL 193
           IPTISVSCL
Sbjct: 849 IPTISVSCL 857

[Close]
BLAST of Cla97C01G011020 vs. NCBI nr
Match: XP_022141713.1 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Momordica charantia])

HSP 1 Score: 100.5 bits (249), Expect = 6.6e-18
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 0 

Query: 125 FISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIEKGSI 184
           FIS  +F MAL+IL+E +EKGN+PD +DK YV +RDAIFKLSED+QT  GVKSLIEKGSI
Sbjct: 777 FISNQNFPMALNILEEAVEKGNVPDPTDKTYVTIRDAIFKLSEDDQTRSGVKSLIEKGSI 836

Query: 185 PTISVSCLR 194
           PTI VS LR
Sbjct: 837 PTIGVSDLR 845

[Close]
BLAST of Cla97C01G011020 vs. NCBI nr
Match: XP_022964323.1 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial isoform X3 [Cucurbita moschata])

HSP 1 Score: 80.1 bits (196), Expect = 9.2e-12
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 0 

Query: 145 GNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIEKGSIPTISVSCLR 194
           G +PD +DKNYV +RDAIFKLSEDE+TG GV+SLIEKGSIPTIS+S L+
Sbjct: 696 GKVPDPADKNYVTIRDAIFKLSEDERTGSGVRSLIEKGSIPTISISDLK 744

[Close]
BLAST of Cla97C01G011020 vs. TrEMBL
Match: tr|A0A1S3BTR3|A0A1S3BTR3_CUCME (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493457 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.1e-24
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 0 

Query: 124 AFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIEKGS 183
           AFISKH+F MA H+LKETIEKGNIP+ +DKNYV +RDAIFKLSEDEQTGLGVKSLIEKG 
Sbjct: 810 AFISKHNFSMAFHVLKETIEKGNIPNPTDKNYVTIRDAIFKLSEDEQTGLGVKSLIEKGH 869

Query: 184 IPTISVSCL 193
           IPTI VSCL
Sbjct: 870 IPTIGVSCL 878

[Close]
BLAST of Cla97C01G011020 vs. TrEMBL
Match: tr|A0A0A0KMI5|A0A0A0KMI5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021350 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.2e-22
Identity = 56/69 (81.16%), Postives = 63/69 (91.30%), Query Frame = 0 

Query: 124 AFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIEKGS 183
           AFISKH+F MA +ILKETIEKGNIPD +DKNYV ++DAIFKLS+DEQTGL VK+LIEKG 
Sbjct: 779 AFISKHNFSMAFNILKETIEKGNIPDPTDKNYVTIKDAIFKLSKDEQTGLEVKALIEKGR 838

Query: 184 IPTISVSCL 193
           IPTISVSCL
Sbjct: 839 IPTISVSCL 847

[Close]
BLAST of Cla97C01G011020 vs. TrEMBL
Match: tr|A0A067LCU9|A0A067LCU9_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10136 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-10
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 0 

Query: 124 AFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIEKGS 183
           AF++   F +A  +LKE I++G  PD  DKNYVIVRDAI +LSEDE+T   VK+LI   S
Sbjct: 758 AFLADLKFPLAFEVLKEMIDRGKFPDMLDKNYVIVRDAIVRLSEDERTSSNVKNLINSSS 817

Query: 184 IPTISVS 191
           IP +S+S
Sbjct: 818 IPPMSLS 824

[Close]
BLAST of Cla97C01G011020 vs. TrEMBL
Match: tr|A0A2P5G0F0|A0A2P5G0F0_9ROSA (Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_007350 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 0 

Query: 124 AFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIEKGS 183
           AF+S  +   A  ILKE ++KG+IPDQ+DKN+ IVRDAI KL  D+ T   VK+LI K  
Sbjct: 776 AFLSNSNLPKAYEILKEMVDKGSIPDQTDKNHAIVRDAILKLLADDLTSSSVKALIAKED 835

Query: 184 IPTISVS 191
           IP+I++S
Sbjct: 836 IPSINLS 842

[Close]
BLAST of Cla97C01G011020 vs. TrEMBL
Match: tr|B9T720|B9T720_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0311050 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.8e-09
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 125 FISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIEKGSI 184
           F++  +F MA  ILK+ +++ N PD  DKN +I+RDAI KLS+D +T   VKSLI  GSI
Sbjct: 556 FVNISNFPMAFEILKKMVDRRNFPDPLDKNCIIIRDAILKLSKDARTSSSVKSLIASGSI 615

Query: 185 PTISVS 191
           PTI +S
Sbjct: 616 PTIYLS 621

The following BLAST results are available for this feature:
BLAST of Cla97C01G011020 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008452421.16.2e-2484.06PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitoc... [more]
KGN49602.13.4e-2281.16hypothetical protein Csa_5G021350 [Cucumis sativus][more]
XP_011654469.13.4e-2281.16PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitoc... [more]
XP_022141713.16.6e-1872.46putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [M... [more]
XP_022964323.19.2e-1275.51putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial is... [more]
BLAST of Cla97C01G011020 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BTR3|A0A1S3BTR3_CUCME4.1e-2484.06putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS... [more]
tr|A0A0A0KMI5|A0A0A0KMI5_CUCSA2.2e-2281.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021350 PE=4 SV=1[more]
tr|A0A067LCU9|A0A067LCU9_JATCU1.5e-1055.22Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10136 PE=4 SV=1[more]
tr|A0A2P5G0F0|A0A2P5G0F0_9ROSA1.7e-0953.73Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=... [more]
tr|B9T720|B9T720_RICCO2.8e-0953.03Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=398... [more]
BLAST of Cla97C01G011020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C01G011020 vs. TAIR10
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G011020.1Cla97C01G011020.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 46..79
e-value: 1.1E-13
score: 48.5
coord: 82..115
e-value: 1.6E-8
score: 32.2
coord: 11..41
e-value: 1.8E-6
score: 25.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 8..57
e-value: 1.3E-16
score: 60.4
coord: 78..125
e-value: 8.7E-9
score: 35.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 11.904
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 44..78
score: 14.217
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 114..148
score: 7.081
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 79..113
score: 12.068
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 1..182
e-value: 1.0E-41
score: 145.3
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILYSSF48452TPR-likecoord: 10..109
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 9..187
NoneNo IPR availablePANTHERPTHR24015:SF342SUBFAMILY NOT NAMEDcoord: 9..187

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G011020Watermelon (97103) v2wmbwmbB001
Cla97C01G011020Silver-seed gourdcarwmbB0048
Cla97C01G011020Silver-seed gourdcarwmbB0523
Cla97C01G011020Cucumber (Gy14) v2cgybwmbB009
Cla97C01G011020Cucumber (Gy14) v1cgywmbB557
Cla97C01G011020Cucumber (Gy14) v1cgywmbB558
Cla97C01G011020Cucurbita maxima (Rimu)cmawmbB208
Cla97C01G011020Cucurbita maxima (Rimu)cmawmbB394
Cla97C01G011020Cucurbita moschata (Rifu)cmowmbB192
Cla97C01G011020Cucurbita moschata (Rifu)cmowmbB380
Cla97C01G011020Wild cucumber (PI 183967)cpiwmbB009
Cla97C01G011020Wild cucumber (PI 183967)cpiwmbB437
Cla97C01G011020Cucumber (Chinese Long) v3cucwmbB008
Cla97C01G011020Cucumber (Chinese Long) v3cucwmbB433
Cla97C01G011020Cucumber (Chinese Long) v2cuwmbB009
Cla97C01G011020Cucumber (Chinese Long) v2cuwmbB415
Cla97C01G011020Bottle gourd (USVL1VR-Ls)lsiwmbB113
Cla97C01G011020Bottle gourd (USVL1VR-Ls)lsiwmbB153
Cla97C01G011020Melon (DHL92) v3.6.1medwmbB126
Cla97C01G011020Melon (DHL92) v3.6.1medwmbB509
Cla97C01G011020Melon (DHL92) v3.5.1mewmbB138
Cla97C01G011020Melon (DHL92) v3.5.1mewmbB517
Cla97C01G011020Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G011020Watermelon (Charleston Gray)wcgwmbB092
Cla97C01G011020Watermelon (97103) v1wmwmbB246
Cla97C01G011020Watermelon (97103) v1wmwmbB252
Cla97C01G011020Wax gourdwgowmbB454
Cla97C01G011020Wax gourdwgowmbB460