Cla97C01G010800 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G010800
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Glutamyl-tRNA synthetase
Location	Cla97Chr01 : 16855192 .. 16856309 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGGGGTAATGCAATAGTGAAAGGGATCGAGAAGGATCAAGATGGATTTGTCACACAGTTGTTAGGAATTTTGCATCTCGAAGGTTCTGTGAAGACCACAAAGTTGAAGGCCACTTGGCTACCTGATATAAACGAACTAGTCACCCTCTCACTTATGGAATATGATTATTTGATCACAAAAAAGAAGGTATGGACGTTTAATATGTTGTGGTATCATATGCACTTTTCTTACTAGTAAATGATGTGAGTCCGTTTGTTTGGTTGATTGTGATATTTTATTCTCTTTCCTGTTGGTTTCGAAGATCTGAAGGAGAGATGTGGCTTAAAATCAAAGTTCAAAACTATGCATACTGACATCAGTGTATTTGGATTGAGATTTTTGTGTTTTATTTGTCTTCTATTTTTAAAAGCCAGATTGCAATCTACATCACTTAGCTTGTTTGGGGCATGTTCGGGAGTGATTTTGAAATGGTTTTAATCACTTTTGTAATTTTCATAATCACTCTAAAAAGTGCTTTTAATCATTTAAAACCAATTTTGATGATATGGAAATTGCATTTAAACGTGCAAAATTAAATATTAAATAAGTTGAGTGATTAAAGACGTGTTTTAAGGGTGATTTTGAGCATGACAAAAGTGATTTTAACAATTTTAAAATCACTACCAAAACCCTGCATTTAATGAATAGTTTGGATCATATATTTACGTGCAAGCGGGTAAGCCAGTTTGTCAATGTATGGATGATGTTCAGTTCAAAAGATTTATGAAATTAGATGTTAATGTGAGCTATGTTACATGTGTTAAAAGTTGTTGGTGAACCTGTTCATATGTTGTTAGGAGAGTGGTTATAGAAATTATAAATTTTAGCTTGATATATACAAATTGCTATTACAGCTGGAAGAAGGAGAGGATTTTCTTGATGTATTAAATCCATGCACAAAAAAGGAGACTGTTGTTGTTGGGGATTCAAACATGCGAAATATAAAGCGTGGAGACATATTGCAGTTAGAGAGGAAGGGGTATTTCAGATGCGATGTTCCATATGTAAGGCCATCCAAACCGATAGTCCTATTTGCAATCCCAGATGGCAGGCAACAATCTTCTTTGAAGTAA

mRNA sequence

ATGGATTGGGGTAATGCAATAGTGAAAGGGATCGAGAAGGATCAAGATGGATTTGTCACACAGTTGTTAGGAATTTTGCATCTCGAAGGTTCTGTGAAGACCACAAAGTTGAAGGCCACTTGGCTACCTGATATAAACGAACTAGTCACCCTCTCACTTATGGAATATGATTATTTGATCACAAAAAAGAAGCTGGAAGAAGGAGAGGATTTTCTTGATGTATTAAATCCATGCACAAAAAAGGAGACTGTTGTTGTTGGGGATTCAAACATGCGAAATATAAAGCGTGGAGACATATTGCAGTTAGAGAGGAAGGGGTATTTCAGATGCGATGTTCCATATGTAAGGCCATCCAAACCGATAGTCCTATTTGCAATCCCAGATGGCAGGCAACAATCTTCTTTGAAGTAA

Coding sequence (CDS)

ATGGATTGGGGTAATGCAATAGTGAAAGGGATCGAGAAGGATCAAGATGGATTTGTCACACAGTTGTTAGGAATTTTGCATCTCGAAGGTTCTGTGAAGACCACAAAGTTGAAGGCCACTTGGCTACCTGATATAAACGAACTAGTCACCCTCTCACTTATGGAATATGATTATTTGATCACAAAAAAGAAGCTGGAAGAAGGAGAGGATTTTCTTGATGTATTAAATCCATGCACAAAAAAGGAGACTGTTGTTGTTGGGGATTCAAACATGCGAAATATAAAGCGTGGAGACATATTGCAGTTAGAGAGGAAGGGGTATTTCAGATGCGATGTTCCATATGTAAGGCCATCCAAACCGATAGTCCTATTTGCAATCCCAGATGGCAGGCAACAATCTTCTTTGAAGTAA

Protein sequence

MDWGNAIVKGIEKDQDGFVTQLLGILHLEGSVKTTKLKATWLPDINELVTLSLMEYDYLITKKKLEEGEDFLDVLNPCTKKETVVVGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKPIVLFAIPDGRQQSSLK

Homology

[Close]

BLAST of Cla97C01G010800 vs. NCBI nr
Match: XP_008450490.1 (PREDICTED: glutamate--tRNA ligase, cytoplasmic [Cucumis melo])

HSP 1 Score: 270.8 bits (691), Expect = 2.6e-69
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MDWGNAIVKGIEKDQDGFVTQLLGILHLEGSVKTTKLKATWLPDINELVTLSLMEYDYLI 60
           MDWGNAIVKGI+KDQDGFVTQL GILHLEGSVKTTKLK TWLPDI ELVTLSLMEYDYLI
Sbjct: 595 MDWGNAIVKGIQKDQDGFVTQLSGILHLEGSVKTTKLKITWLPDIKELVTLSLMEYDYLI 654

Query: 61  TKKKLEEGEDFLDVLNPCTKKETVVVGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP 120
           TKKKLEEGEDFLDVLNPCTKKET+ VGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP
Sbjct: 655 TKKKLEEGEDFLDVLNPCTKKETIAVGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP 714

Query: 121 IVLFAIPDGRQQSSLK 137
           IVLFAIPDGRQQSSLK
Sbjct: 715 IVLFAIPDGRQQSSLK 730

[Close]

BLAST of Cla97C01G010800 vs. NCBI nr
Match: XP_022157609.1 (glutamate--tRNA ligase, cytoplasmic [Momordica charantia])

HSP 1 Score: 267.3 bits (682), Expect = 2.8e-68
Identity = 127/136 (93.38%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MDWGNAIVKGIEKDQDGFVTQLLGILHLEGSVKTTKLKATWLPDINELVTLSLMEYDYLI 60
           MDWGNAIVKGIEKDQDG+VT+L GILHLEGSVKTTKLKATWLPDINELVTLSLME+DYLI
Sbjct: 598 MDWGNAIVKGIEKDQDGYVTKLSGILHLEGSVKTTKLKATWLPDINELVTLSLMEFDYLI 657

Query: 61  TKKKLEEGEDFLDVLNPCTKKETVVVGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP 120
           TKKKLEEGEDFLDVLNPCTKKE+V VGDSNMRN+KRGDILQLERKGYFRCDVPYVRPSKP
Sbjct: 658 TKKKLEEGEDFLDVLNPCTKKESVAVGDSNMRNLKRGDILQLERKGYFRCDVPYVRPSKP 717

Query: 121 IVLFAIPDGRQQSSLK 137
           IVLFAIPDGRQQS +K
Sbjct: 718 IVLFAIPDGRQQSCMK 733

[Close]

BLAST of Cla97C01G010800 vs. NCBI nr
Match: XP_022961381.1 (glutamate--tRNA ligase, cytoplasmic-like [Cucurbita moschata] >XP_022961382.1 glutamate--tRNA ligase, cytoplasmic-like [Cucurbita moschata] >XP_022961383.1 glutamate--tRNA ligase, cytoplasmic-like [Cucurbita moschata])

HSP 1 Score: 264.2 bits (674), Expect = 2.4e-67
Identity = 127/136 (93.38%), Postives = 130/136 (95.59%), Query Frame = 0


Query: 1   MDWGNAIVKGIEKDQDGFVTQLLGILHLEGSVKTTKLKATWLPDINELVTLSLMEYDYLI 60
           MDWGNAI+KGIEKD DGFVT+L GILHLEGSVKTTKLKATWLPDINELVTLSLMEYDYLI
Sbjct: 597 MDWGNAILKGIEKDGDGFVTRLSGILHLEGSVKTTKLKATWLPDINELVTLSLMEYDYLI 656

Query: 61  TKKKLEEGEDFLDVLNPCTKKETVVVGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP 120
           TKKKLEEGEDFLDVLNPCTKKET+ VGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP
Sbjct: 657 TKKKLEEGEDFLDVLNPCTKKETIAVGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP 716

Query: 121 IVLFAIPDGRQQSSLK 137
           IVL AIPDGRQQS  K
Sbjct: 717 IVLLAIPDGRQQSCSK 732

[Close]

BLAST of Cla97C01G010800 vs. NCBI nr
Match: XP_023530545.1 (glutamate--tRNA ligase, cytoplasmic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.5 bits (672), Expect = 4.1e-67
Identity = 125/136 (91.91%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 1   MDWGNAIVKGIEKDQDGFVTQLLGILHLEGSVKTTKLKATWLPDINELVTLSLMEYDYLI 60
           MDWGNAIVK IEKDQDGFVTQ+ GILHLEGSVKTTKLKATWLPDINELVTLSLME+DYLI
Sbjct: 597 MDWGNAIVKRIEKDQDGFVTQMSGILHLEGSVKTTKLKATWLPDINELVTLSLMEFDYLI 656

Query: 61  TKKKLEEGEDFLDVLNPCTKKETVVVGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP 120
           TKKKL+EGEDFLD LNPCTKKETV +GDSNMRN+KRGDILQLERKGYFRCDVPYVRPSKP
Sbjct: 657 TKKKLDEGEDFLDALNPCTKKETVALGDSNMRNLKRGDILQLERKGYFRCDVPYVRPSKP 716

Query: 121 IVLFAIPDGRQQSSLK 137
           IVLFAIPDGRQQ+ LK
Sbjct: 717 IVLFAIPDGRQQACLK 732

[Close]

BLAST of Cla97C01G010800 vs. NCBI nr
Match: XP_004135579.1 (PREDICTED: glutamate--tRNA ligase, cytoplasmic [Cucumis sativus] >KGN66007.1 hypothetical protein Csa_1G561380 [Cucumis sativus])

HSP 1 Score: 263.1 bits (671), Expect = 5.3e-67
Identity = 127/136 (93.38%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 1   MDWGNAIVKGIEKDQDGFVTQLLGILHLEGSVKTTKLKATWLPDINELVTLSLMEYDYLI 60
           MDWGNAIVKGIEKDQDGFV QL GILHLEGSVKTTKLK TWLP+I ELVTLSLMEYDYLI
Sbjct: 594 MDWGNAIVKGIEKDQDGFVKQLSGILHLEGSVKTTKLKITWLPEIKELVTLSLMEYDYLI 653

Query: 61  TKKKLEEGEDFLDVLNPCTKKETVVVGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP 120
           TKKKLEEGEDFLDVLNPCTKKET+ VGDSNMRNIKRGDILQLERKGYFRCDVPYVR SKP
Sbjct: 654 TKKKLEEGEDFLDVLNPCTKKETIAVGDSNMRNIKRGDILQLERKGYFRCDVPYVRSSKP 713

Query: 121 IVLFAIPDGRQQSSLK 137
           IVLFAIPDGRQQS LK
Sbjct: 714 IVLFAIPDGRQQSCLK 729

[Close]

BLAST of Cla97C01G010800 vs. TrEMBL
Match: tr|A0A1S3BPD2|A0A1S3BPD2_CUCME (glutamate--tRNA ligase, cytoplasmic OS=Cucumis melo OX=3656 GN=LOC103492081 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.7e-69
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MDWGNAIVKGIEKDQDGFVTQLLGILHLEGSVKTTKLKATWLPDINELVTLSLMEYDYLI 60
           MDWGNAIVKGI+KDQDGFVTQL GILHLEGSVKTTKLK TWLPDI ELVTLSLMEYDYLI
Sbjct: 595 MDWGNAIVKGIQKDQDGFVTQLSGILHLEGSVKTTKLKITWLPDIKELVTLSLMEYDYLI 654

Query: 61  TKKKLEEGEDFLDVLNPCTKKETVVVGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP 120
           TKKKLEEGEDFLDVLNPCTKKET+ VGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP
Sbjct: 655 TKKKLEEGEDFLDVLNPCTKKETIAVGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP 714

Query: 121 IVLFAIPDGRQQSSLK 137
           IVLFAIPDGRQQSSLK
Sbjct: 715 IVLFAIPDGRQQSSLK 730

[Close]

BLAST of Cla97C01G010800 vs. TrEMBL
Match: tr|A0A0A0LYW4|A0A0A0LYW4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561380 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.5e-67
Identity = 127/136 (93.38%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 1   MDWGNAIVKGIEKDQDGFVTQLLGILHLEGSVKTTKLKATWLPDINELVTLSLMEYDYLI 60
           MDWGNAIVKGIEKDQDGFV QL GILHLEGSVKTTKLK TWLP+I ELVTLSLMEYDYLI
Sbjct: 594 MDWGNAIVKGIEKDQDGFVKQLSGILHLEGSVKTTKLKITWLPEIKELVTLSLMEYDYLI 653

Query: 61  TKKKLEEGEDFLDVLNPCTKKETVVVGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP 120
           TKKKLEEGEDFLDVLNPCTKKET+ VGDSNMRNIKRGDILQLERKGYFRCDVPYVR SKP
Sbjct: 654 TKKKLEEGEDFLDVLNPCTKKETIAVGDSNMRNIKRGDILQLERKGYFRCDVPYVRSSKP 713

Query: 121 IVLFAIPDGRQQSSLK 137
           IVLFAIPDGRQQS LK
Sbjct: 714 IVLFAIPDGRQQSCLK 729

[Close]

BLAST of Cla97C01G010800 vs. TrEMBL
Match: tr|A0A2P5DRC6|A0A2P5DRC6_9ROSA (Glutamyl-tRNA synthetase, archaeal/eukaryotic cytosolic OS=Trema orientalis OX=63057 GN=TorRG33x02_244460 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 8.1e-64
Identity = 116/136 (85.29%), Postives = 128/136 (94.12%), Query Frame = 0


Query: 1   MDWGNAIVKGIEKDQDGFVTQLLGILHLEGSVKTTKLKATWLPDINELVTLSLMEYDYLI 60
           MDWGNAI+KGIEKDQ+G VTQL G+LHLEGSVKTTKLK TWLP+ NELV LSL+E+DYLI
Sbjct: 595 MDWGNAIIKGIEKDQEGKVTQLTGVLHLEGSVKTTKLKLTWLPETNELVNLSLVEFDYLI 654

Query: 61  TKKKLEEGEDFLDVLNPCTKKETVVVGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP 120
           TKKKLEEGEDFLDVLNPCTKKET  +GDSN+RN+KRG+ILQLERKGYFRCDVPYVRPSKP
Sbjct: 655 TKKKLEEGEDFLDVLNPCTKKETAAIGDSNIRNLKRGEILQLERKGYFRCDVPYVRPSKP 714

Query: 121 IVLFAIPDGRQQSSLK 137
           +VLFAIPDGRQQ+ LK
Sbjct: 715 VVLFAIPDGRQQTGLK 730

[Close]

BLAST of Cla97C01G010800 vs. TrEMBL
Match: tr|A0A2P5DEH0|A0A2P5DEH0_PARAD (Glutamyl-tRNA synthetase, archaeal/eukaryotic cytosolic OS=Parasponia andersonii OX=3476 GN=PanWU01x14_071280 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.8e-63
Identity = 116/136 (85.29%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 1   MDWGNAIVKGIEKDQDGFVTQLLGILHLEGSVKTTKLKATWLPDINELVTLSLMEYDYLI 60
           MDWGNAI+KGIEKDQ+G VTQL+G+LHLEGSVKTTKLK TWLP+ NELV LSL+E+DYLI
Sbjct: 596 MDWGNAIIKGIEKDQEGKVTQLMGVLHLEGSVKTTKLKLTWLPETNELVNLSLVEFDYLI 655

Query: 61  TKKKLEEGEDFLDVLNPCTKKETVVVGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP 120
           TKKKLEEGEDFLDVLNPCTKKET  +GDSN+RN+KR +ILQLERKGYFRCDVPYVRPSKP
Sbjct: 656 TKKKLEEGEDFLDVLNPCTKKETAALGDSNIRNLKRREILQLERKGYFRCDVPYVRPSKP 715

Query: 121 IVLFAIPDGRQQSSLK 137
           +VLFAIPDGRQQ+SLK
Sbjct: 716 VVLFAIPDGRQQTSLK 731

[Close]

BLAST of Cla97C01G010800 vs. TrEMBL
Match: tr|W9SWJ4|W9SWJ4_9ROSA (Putative glutamate--tRNA ligase OS=Morus notabilis OX=981085 GN=L484_021319 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 6.9e-63
Identity = 116/136 (85.29%), Postives = 127/136 (93.38%), Query Frame = 0


Query: 1   MDWGNAIVKGIEKDQDGFVTQLLGILHLEGSVKTTKLKATWLPDINELVTLSLMEYDYLI 60
           MDWGNAI+KGIE+DQDG VTQL G+LHLEGSVKTTK K TWLP INELV L+LME+DYLI
Sbjct: 597 MDWGNAIIKGIERDQDGKVTQLTGVLHLEGSVKTTKWKLTWLPKINELVNLTLMEFDYLI 656

Query: 61  TKKKLEEGEDFLDVLNPCTKKETVVVGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP 120
           TKKKLEEGEDFLDVLN CTKKET  +GD+NMRN+KRG+ILQLERKGYFRCDVPY+RPSKP
Sbjct: 657 TKKKLEEGEDFLDVLNRCTKKETAAIGDANMRNLKRGEILQLERKGYFRCDVPYLRPSKP 716

Query: 121 IVLFAIPDGRQQSSLK 137
           IVLFAIPDGRQQ+SLK
Sbjct: 717 IVLFAIPDGRQQTSLK 732

[Close]

BLAST of Cla97C01G010800 vs. Swiss-Prot
Match: sp|O82462|SYEC_ARATH (Glutamate--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At5g26710 PE=1 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 9.6e-52
Identity = 94/130 (72.31%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MDWGNAIVKGIEKDQDGFVTQLLGILHLEGSVKTTKLKATWLPDINELVTLSLMEYDYLI 60
           MDWGNAIVK I KD++G VT L G+L+L+GSVKTTKLK TWLPD NELV L+L E+DYLI
Sbjct: 587 MDWGNAIVKEITKDEEGRVTALSGVLNLQGSVKTTKLKLTWLPDTNELVNLTLTEFDYLI 646

Query: 61  TKKKLEEGEDFLDVLNPCTKKETVVVGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP 120
           TKKKLE+ ++  D +NP TKKET+ +GDSNMRN+K GD++QLERKGYFRCDVP+V+ SKP
Sbjct: 647 TKKKLEDDDEVADFVNPNTKKETLALGDSNMRNLKCGDVIQLERKGYFRCDVPFVKSSKP 706

Query: 121 IVLFAIPDGR 131
           IVLF+IPDGR
Sbjct: 707 IVLFSIPDGR 716

[Close]

BLAST of Cla97C01G010800 vs. Swiss-Prot
Match: sp|O13775|SYEC_SCHPO (Probable glutamate--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=gus1 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.1e-30
Identity = 64/130 (49.23%), Postives = 86/130 (66.15%), Query Frame = 0


Query: 1   MDWGNAIVKGIEKDQDGFVTQLLGILHLEGSVKTTKLKATWLPDINELVTLSLMEYDYLI 60
           MDWGNA V+ I +D  G VT L   LHL+G  K T+ K TWL D  +   + L+++DYLI
Sbjct: 580 MDWGNAYVREINRDASGKVTSLKLELHLDGDFKKTEKKVTWLADTEDKTPVDLVDFDYLI 639

Query: 61  TKKKLEEGEDFLDVLNPCTKKETVVVGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP 120
           TK KLEEGE++ D L P T+  + V  D  ++N+K+GDI+Q+ERKGY+  DVP+      
Sbjct: 640 TKDKLEEGENYKDFLTPQTEFHSPVFADVGIKNLKKGDIIQVERKGYYIVDVPF--DGTQ 699

Query: 121 IVLFAIPDGR 131
            VLF IPDG+
Sbjct: 700 AVLFNIPDGK 707

[Close]

BLAST of Cla97C01G010800 vs. Swiss-Prot
Match: sp|P46655|SYEC_YEAST (Glutamate--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=GUS1 PE=1 SV=3)

HSP 1 Score: 119.0 bits (297), Expect = 4.1e-26
Identity = 60/130 (46.15%), Postives = 84/130 (64.62%), Query Frame = 0


Query: 1   MDWGNAIVKGIEKDQDGFVTQLLGILHLEGSVKTTKLKATWLPDINELVTLSLMEYDYLI 60
           MDWGN I+   +K+ DG    ++  L+LEG  K TK K TWL D  ++V + L+++D+LI
Sbjct: 576 MDWGNVII--TKKNDDG---SMVAKLNLEGDFKKTKHKLTWLADTKDVVPVDLVDFDHLI 635

Query: 61  TKKKLEEGEDFLDVLNPCTKKETVVVGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP 120
           TK +LEE E F D L P T+  T  + D N++++K GDI+Q ERKGY+R D    +  KP
Sbjct: 636 TKDRLEEDESFEDFLTPQTEFHTDAIADLNVKDMKIGDIIQFERKGYYRLDA-LPKDGKP 695

Query: 121 IVLFAIPDGR 131
            V F IPDG+
Sbjct: 696 YVFFTIPDGK 699

[Close]

BLAST of Cla97C01G010800 vs. Swiss-Prot
Match: sp|Q54KB8|SYEC_DICDI (Probable glutamate--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=gluS PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.1e-22
Identity = 55/130 (42.31%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 1   MDWGNAIVKGIEKDQDGFVTQLLGILHLEGSVKTTKLKATWL-PDINELVTLSLMEYDYL 60
           M+WGNAIV+ ++++++G V  + G LHLEG VK T  K +WL  D  + VT+ L +YDY+
Sbjct: 599 MNWGNAIVETLQRNENGDVVSMTGKLHLEGDVKKTDKKLSWLSSDCADTVTVVLQDYDYI 658

Query: 61  ITKKKLEEGEDFLDVLNPCTKKETVVVGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSK 120
           ITK KLE+G+D     N  +K E     D N+  +K  D +Q ER+G+F  D       K
Sbjct: 659 ITKPKLEDGDDLDTFTNKNSKFEIEAFTDENILTLKLNDKIQFERRGFFNVD-QVGDGVK 718

Query: 121 PIVLFAIPDG 130
           P +L  IP G
Sbjct: 719 PYILIYIPSG 727

[Close]

BLAST of Cla97C01G010800 vs. Swiss-Prot
Match: sp|P28668|SYEP_DROME (Bifunctional glutamate/proline--tRNA ligase OS=Drosophila melanogaster OX=7227 GN=GluProRS PE=1 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-19
Identity = 50/138 (36.23%), Postives = 78/138 (56.52%), Query Frame = 0


Query: 1   MDWGNAIVKGIEKDQDGFVTQLLGILHLEGSVKTTKLKATWL---PDINELVTLSLMEYD 60
           ++WGN +++ + KD  G +T +   L+LE       LK TWL    D +       + +D
Sbjct: 575 INWGNILIRKVNKDASGNITSVDAALNLENKDFKKTLKLTWLAVEDDPSAYPPTFCVYFD 634

Query: 61  YLITKKKLEEGEDFLDVLNPCTKKETVVVGDSNMRNIKRGDILQLERKGYFRCDVPYVRP 120
            +I+K  L + EDF   +   T+ E  ++GD  ++  K+GDI+QL+R+G+F+ DV Y  P
Sbjct: 635 NIISKAVLGKDEDFKQFIGHKTRDEVPMLGDPELKKCKKGDIIQLQRRGFFKVDVAYAPP 694

Query: 121 S------KPIVLFAIPDG 130
           S       PIVLF+IPDG
Sbjct: 695 SGYTNVPSPIVLFSIPDG 712

[Close]

BLAST of Cla97C01G010800 vs. TAIR10
Match: AT5G26710.1 (Glutamyl/glutaminyl-tRNA synthetase, class Ic)

HSP 1 Score: 204.1 bits (518), Expect = 5.3e-53
Identity = 94/130 (72.31%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MDWGNAIVKGIEKDQDGFVTQLLGILHLEGSVKTTKLKATWLPDINELVTLSLMEYDYLI 60
           MDWGNAIVK I KD++G VT L G+L+L+GSVKTTKLK TWLPD NELV L+L E+DYLI
Sbjct: 587 MDWGNAIVKEITKDEEGRVTALSGVLNLQGSVKTTKLKLTWLPDTNELVNLTLTEFDYLI 646

Query: 61  TKKKLEEGEDFLDVLNPCTKKETVVVGDSNMRNIKRGDILQLERKGYFRCDVPYVRPSKP 120
           TKKKLE+ ++  D +NP TKKET+ +GDSNMRN+K GD++QLERKGYFRCDVP+V+ SKP
Sbjct: 647 TKKKLEDDDEVADFVNPNTKKETLALGDSNMRNLKCGDVIQLERKGYFRCDVPFVKSSKP 706

Query: 121 IVLFAIPDGR 131
           IVLF+IPDGR
Sbjct: 707 IVLFSIPDGR 716

The following BLAST results are available for this feature:

BLAST of Cla97C01G010800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450490.1	2.6e-69	95.59	PREDICTED: glutamate--tRNA ligase, cytoplasmic [Cucumis melo]	[more]
XP_022157609.1	2.8e-68	93.38	glutamate--tRNA ligase, cytoplasmic [Momordica charantia]	[more]
XP_022961381.1	2.4e-67	93.38	glutamate--tRNA ligase, cytoplasmic-like [Cucurbita moschata] >XP_022961382.1 gl...	[more]
XP_023530545.1	4.1e-67	91.91	glutamate--tRNA ligase, cytoplasmic-like [Cucurbita pepo subsp. pepo]	[more]
XP_004135579.1	5.3e-67	93.38	PREDICTED: glutamate--tRNA ligase, cytoplasmic [Cucumis sativus] >KGN66007.1 hyp...	[more]

BLAST of Cla97C01G010800 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BPD2\|A0A1S3BPD2_CUCME	1.7e-69	95.59	glutamate--tRNA ligase, cytoplasmic OS=Cucumis melo OX=3656 GN=LOC103492081 PE=3...	[more]
tr\|A0A0A0LYW4\|A0A0A0LYW4_CUCSA	3.5e-67	93.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561380 PE=3 SV=1	[more]
tr\|A0A2P5DRC6\|A0A2P5DRC6_9ROSA	8.1e-64	85.29	Glutamyl-tRNA synthetase, archaeal/eukaryotic cytosolic OS=Trema orientalis OX=6...	[more]
tr\|A0A2P5DEH0\|A0A2P5DEH0_PARAD	1.8e-63	85.29	Glutamyl-tRNA synthetase, archaeal/eukaryotic cytosolic OS=Parasponia andersonii...	[more]
tr\|W9SWJ4\|W9SWJ4_9ROSA	6.9e-63	85.29	Putative glutamate--tRNA ligase OS=Morus notabilis OX=981085 GN=L484_021319 PE=3...	[more]

BLAST of Cla97C01G010800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82462\|SYEC_ARATH	9.6e-52	72.31	Glutamate--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At5g26710...	[more]
sp\|O13775\|SYEC_SCHPO	6.1e-30	49.23	Probable glutamate--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strai...	[more]
sp\|P46655\|SYEC_YEAST	4.1e-26	46.15	Glutamate--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204...	[more]
sp\|Q54KB8\|SYEC_DICDI	6.1e-22	42.31	Probable glutamate--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum OX=4468...	[more]
sp\|P28668\|SYEP_DROME	2.2e-19	36.23	Bifunctional glutamate/proline--tRNA ligase OS=Drosophila melanogaster OX=7227 G...	[more]

BLAST of Cla97C01G010800 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26710.1	5.3e-53	72.31	Glutamyl/glutaminyl-tRNA synthetase, class Ic	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006418	tRNA aminoacylation for protein translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0004812	aminoacyl-tRNA ligase activity
GO:0000166	nucleotide binding
GO:0005524	ATP binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **INTERPRO**
Term	Definition
IPR011035	Ribosomal_L25/Gln-tRNA_synth
IPR020059	Glu/Gln-tRNA-synth_Ib_codon-bd
IPR020056	Rbsml_L25/Gln-tRNA_synth_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006424	glutamyl-tRNA aminoacylation
biological_process	GO:0006412	translation
biological_process	GO:0043039	tRNA aminoacylation
biological_process	GO:0006418	tRNA aminoacylation for protein translation
biological_process	GO:0015994	chlorophyll metabolic process
biological_process	GO:0044711	single-organism biosynthetic process
biological_process	GO:0006425	glutaminyl-tRNA aminoacylation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0009332	glutamate-tRNA ligase complex
cellular_component	GO:0005829	cytosol
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004818	glutamate-tRNA ligase activity
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004819	glutamine-tRNA ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G010800.1	Cla97C01G010800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020056	Ribosomal protein L25/Gln-tRNA synthetase, N-terminal	GENE3D	G3DSA:2.40.240.10		coord: 43..124 e-value: 1.7E-9 score: 39.4
IPR020059	Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain	PFAM	PF03950	tRNA-synt_1c_C	coord: 1..111 e-value: 3.5E-19 score: 69.3
None	No IPR available	PANTHER	PTHR43097	FAMILY NOT NAMED	coord: 1..136
None	No IPR available	PANTHER	PTHR43097:SF8	GLUTAMATE--TRNA LIGASE, CYTOPLASMIC	coord: 1..136
IPR011035	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily	SUPERFAMILY	SSF50715	Ribosomal protein L25-like	coord: 1..131

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G010800	Cla010986	Watermelon (97103) v1	wmwmbB246
Cla97C01G010800	ClCG01G011110	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G010800	Carg24396	Silver-seed gourd	carwmbB0048
Cla97C01G010800	Bhi08G000613	Wax gourd	wgowmbB460

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G010800	Watermelon (97103) v2	wmbwmbB001
Cla97C01G010800	Silver-seed gourd	carwmbB0050
Cla97C01G010800	Silver-seed gourd	carwmbB0425
Cla97C01G010800	Silver-seed gourd	carwmbB0778
Cla97C01G010800	Cucumber (Gy14) v2	cgybwmbB008
Cla97C01G010800	Cucumber (Gy14) v2	cgybwmbB009
Cla97C01G010800	Cucumber (Gy14) v1	cgywmbB325
Cla97C01G010800	Cucumber (Gy14) v1	cgywmbB557
Cla97C01G010800	Cucurbita maxima (Rimu)	cmawmbB394
Cla97C01G010800	Cucurbita maxima (Rimu)	cmawmbB669
Cla97C01G010800	Cucurbita moschata (Rifu)	cmowmbB042
Cla97C01G010800	Cucurbita moschata (Rifu)	cmowmbB380
Cla97C01G010800	Cucurbita moschata (Rifu)	cmowmbB641
Cla97C01G010800	Wild cucumber (PI 183967)	cpiwmbB008
Cla97C01G010800	Wild cucumber (PI 183967)	cpiwmbB009
Cla97C01G010800	Wild cucumber (PI 183967)	cpiwmbB437
Cla97C01G010800	Cucumber (Chinese Long) v3	cucwmbB007
Cla97C01G010800	Cucumber (Chinese Long) v3	cucwmbB008
Cla97C01G010800	Cucumber (Chinese Long) v3	cucwmbB433
Cla97C01G010800	Cucumber (Chinese Long) v2	cuwmbB008
Cla97C01G010800	Cucumber (Chinese Long) v2	cuwmbB009
Cla97C01G010800	Cucumber (Chinese Long) v2	cuwmbB415
Cla97C01G010800	Bottle gourd (USVL1VR-Ls)	lsiwmbB113
Cla97C01G010800	Bottle gourd (USVL1VR-Ls)	lsiwmbB153
Cla97C01G010800	Bottle gourd (USVL1VR-Ls)	lsiwmbB159
Cla97C01G010800	Melon (DHL92) v3.6.1	medwmbB126
Cla97C01G010800	Melon (DHL92) v3.6.1	medwmbB134
Cla97C01G010800	Melon (DHL92) v3.6.1	medwmbB509
Cla97C01G010800	Melon (DHL92) v3.5.1	mewmbB138
Cla97C01G010800	Melon (DHL92) v3.5.1	mewmbB145
Cla97C01G010800	Melon (DHL92) v3.5.1	mewmbB517
Cla97C01G010800	Watermelon (Charleston Gray)	wcgwmbB092
Cla97C01G010800	Watermelon (97103) v1	wmwmbB252