Cla97C01G009630 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G009630
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	DNA-directed RNA polymerase II subunit E
Location	Cla97Chr01 : 12351588 .. 12352263 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATGTTAGTTTGTAATTACTTATGTGATTTCCATTGTCCACATAATTATGCCTACATTCTTATTTTACTAAAGTTAATGTTACCTCTTTGTCACTTTTTGATGCAGGAAGCAGAATTGATGGTTAACATTAAAAATCACGTTCTCATTCCCGAGCACCAGTCCCTGACAAATGAAGAGAAGAAGACGTTGTTGGAGAGGTATACGGTGAAAGAAACACAAGTGAGTTTCATCTTTTTTTCTTGAAATACACGAACATTGTGAGAATTTATCTTTCATAAACATGTTGAAATAACCTTTGTAGATTGGCCCGTGGTGGATAAGGGCTATGTAAATAATGTGGGTTTTAGGGAATAAGTTTAAGCAATGATGATCACCTACCTAAGATTTAATATCCTACAAGTTACATTGACAATCAAATATCGTAGGGTTAGGCAGTTGTTTCATTTGAATAGTCGAGATGTGCACAAGTTGGGTTTGACACTCTTGGATACATATTTAAATGTGTTTCTGTTAGTTCCTAAAGTGATTTTGTATTTTTTCTCAGCTACCTCGCATACAGGTTACCGATCCAATTGCTAGATATTATGGGCTGAAGCGTGGACAAGTAGTGAAGATCATCCGACCAAGCGAAACTGCAGGAAGATATGTGACTTATAGATACGTTGTTTGA

mRNA sequence

ATGGTAATGTTAGTTTGTAATTACTTATGTGATTTCCATTGTCCACATAATTATGCCTACATTCTTATTTTACTAAAGTTAATGTTACCTCTTTGTCACTTTTTGATGCAGGAAGCAGAATTGATGGTTAACATTAAAAATCACGTTCTCATTCCCGAGCACCAGTCCCTGACAAATGAAGAGAAGAAGACGTTGTTGGAGAGGTATACGGTGAAAGAAACACAACTACCTCGCATACAGGTTACCGATCCAATTGCTAGATATTATGGGCTGAAGCGTGGACAAGTAGTGAAGATCATCCGACCAAGCGAAACTGCAGGAAGATATGTGACTTATAGATACGTTGTTTGA

Coding sequence (CDS)

ATGGTAATGTTAGTTTGTAATTACTTATGTGATTTCCATTGTCCACATAATTATGCCTACATTCTTATTTTACTAAAGTTAATGTTACCTCTTTGTCACTTTTTGATGCAGGAAGCAGAATTGATGGTTAACATTAAAAATCACGTTCTCATTCCCGAGCACCAGTCCCTGACAAATGAAGAGAAGAAGACGTTGTTGGAGAGGTATACGGTGAAAGAAACACAACTACCTCGCATACAGGTTACCGATCCAATTGCTAGATATTATGGGCTGAAGCGTGGACAAGTAGTGAAGATCATCCGACCAAGCGAAACTGCAGGAAGATATGTGACTTATAGATACGTTGTTTGA

Protein sequence

MVMLVCNYLCDFHCPHNYAYILILLKLMLPLCHFLMQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV

Homology

[Close]

BLAST of Cla97C01G009630 vs. NCBI nr
Match: GAY49602.1 (hypothetical protein CUMW_120350 [Citrus unshiu] >GAY49603.1 hypothetical protein CUMW_120350 [Citrus unshiu])

HSP 1 Score: 153.3 bits (386), Expect = 5.1e-34
Identity = 76/83 (91.57%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 34  FLMQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKR 93
           F++QEAEL+VNIK HVL+PEHQ LTNEEKKTLL+RYTVKETQLPRIQVTDPIARYYGLKR
Sbjct: 185 FIIQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYGLKR 244

Query: 94  GQVVKIIRPSETAGRYVTYRYVV 117
           GQVVKIIRPSETAGRYVTYRYVV
Sbjct: 245 GQVVKIIRPSETAGRYVTYRYVV 267

[Close]

BLAST of Cla97C01G009630 vs. NCBI nr
Match: XP_022955185.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_022994897.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima])

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 35  LMQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRG 94
           + QEAELMVN+K+HVLIPEHQ LTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRG
Sbjct: 125 VFQEAELMVNVKDHVLIPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRG 184

Query: 95  QVVKIIRPSETAGRYVTYRYVV 117
           QV+KIIRPSETAGRYVTYRYVV
Sbjct: 185 QVLKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cla97C01G009630 vs. NCBI nr
Match: XP_023541037.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 35  LMQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRG 94
           + QEAELMVN+K+HVLIPEHQ LTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRG
Sbjct: 125 VFQEAELMVNVKDHVLIPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRG 184

Query: 95  QVVKIIRPSETAGRYVTYRYVV 117
           QV+KIIRPSETAGRYVTYRYVV
Sbjct: 185 QVLKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cla97C01G009630 vs. NCBI nr
Match: XP_008451219.1 (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 1.5e-33
Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 35  LMQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRG 94
           + QEAEL+VNIK+HVL+PEHQ LTNEEKKTLLERYTVKETQLPRIQVTDP+ARYYGLKRG
Sbjct: 126 VFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRG 185

Query: 95  QVVKIIRPSETAGRYVTYRYVV 117
           QVVKIIRPSETAGRYVTYRYVV
Sbjct: 186 QVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Cla97C01G009630 vs. NCBI nr
Match: XP_022037585.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Helianthus annuus] >OTG24638.1 putative eukaryotic rpb5 RNA polymerase subunit family protein [Helianthus annuus])

HSP 1 Score: 151.8 bits (382), Expect = 1.5e-33
Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 35  LMQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRG 94
           + QEAEL+VN+KNHVL+PEHQ LTNEEKKTLLERYTVKETQLPRIQV+DP+ARYYGLKRG
Sbjct: 127 VFQEAELLVNVKNHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQVSDPVARYYGLKRG 186

Query: 95  QVVKIIRPSETAGRYVTYRYVV 117
           QVVKIIRPSETAGRYVTYRYVV
Sbjct: 187 QVVKIIRPSETAGRYVTYRYVV 208

[Close]

BLAST of Cla97C01G009630 vs. TrEMBL
Match: tr|A0A2H5PB69|A0A2H5PB69_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_120350 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.4e-34
Identity = 76/83 (91.57%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 34  FLMQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKR 93
           F++QEAEL+VNIK HVL+PEHQ LTNEEKKTLL+RYTVKETQLPRIQVTDPIARYYGLKR
Sbjct: 185 FIIQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYGLKR 244

Query: 94  GQVVKIIRPSETAGRYVTYRYVV 117
           GQVVKIIRPSETAGRYVTYRYVV
Sbjct: 245 GQVVKIIRPSETAGRYVTYRYVV 267

[Close]

BLAST of Cla97C01G009630 vs. TrEMBL
Match: tr|A0A2U1MFI7|A0A2U1MFI7_ARTAN (DNA-directed RNA polymerase, RPB5 subunit OS=Artemisia annua OX=35608 GN=CTI12_AA207920 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 9.8e-34
Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 35  LMQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRG 94
           + QEAEL+VN+KNHVL+PEHQ LTNEEKKTLLERYTVKETQLPRIQV+DP+ARYYGLKRG
Sbjct: 127 VFQEAELLVNVKNHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQVSDPVARYYGLKRG 186

Query: 95  QVVKIIRPSETAGRYVTYRYVV 117
           QVVKIIRPSETAGRYVTYRYVV
Sbjct: 187 QVVKIIRPSETAGRYVTYRYVV 208

[Close]

BLAST of Cla97C01G009630 vs. TrEMBL
Match: tr|A0A251UMR2|A0A251UMR2_HELAN (Putative eukaryotic rpb5 RNA polymerase subunit family protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0138911 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 9.8e-34
Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 35  LMQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRG 94
           + QEAEL+VN+KNHVL+PEHQ LTNEEKKTLLERYTVKETQLPRIQV+DP+ARYYGLKRG
Sbjct: 127 VFQEAELLVNVKNHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQVSDPVARYYGLKRG 186

Query: 95  QVVKIIRPSETAGRYVTYRYVV 117
           QVVKIIRPSETAGRYVTYRYVV
Sbjct: 187 QVVKIIRPSETAGRYVTYRYVV 208

[Close]

BLAST of Cla97C01G009630 vs. TrEMBL
Match: tr|A0A1S3BS23|A0A1S3BS23_CUCME (DNA-directed RNA polymerases II and IV subunit 5A OS=Cucumis melo OX=3656 GN=LOC103492579 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 9.8e-34
Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 35  LMQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRG 94
           + QEAEL+VNIK+HVL+PEHQ LTNEEKKTLLERYTVKETQLPRIQVTDP+ARYYGLKRG
Sbjct: 126 VFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRG 185

Query: 95  QVVKIIRPSETAGRYVTYRYVV 117
           QVVKIIRPSETAGRYVTYRYVV
Sbjct: 186 QVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Cla97C01G009630 vs. TrEMBL
Match: tr|A0A2U1L243|A0A2U1L243_ARTAN (Eukaryotic rpb5 RNA polymerase subunit family protein OS=Artemisia annua OX=35608 GN=CTI12_AA539140 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 9.8e-34
Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 35  LMQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRG 94
           + QEAEL+VN+KNHVL+PEHQ LTNEEKKTLLERYTVKETQLPRIQV+DP+ARYYGLKRG
Sbjct: 127 VFQEAELLVNVKNHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQVSDPVARYYGLKRG 186

Query: 95  QVVKIIRPSETAGRYVTYRYVV 117
           QVVKIIRPSETAGRYVTYRYVV
Sbjct: 187 QVVKIIRPSETAGRYVTYRYVV 208

[Close]

BLAST of Cla97C01G009630 vs. Swiss-Prot
Match: sp|O81098|RPB5A_ARATH (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-34
Identity = 73/82 (89.02%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 35  LMQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRG 94
           + QEAE++VNIK HVL+PEHQ LT EEKKTLLERYTVKETQLPRIQVTDPIARY+GLKRG
Sbjct: 124 VFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRG 183

Query: 95  QVVKIIRPSETAGRYVTYRYVV 117
           QVVKIIRPSETAGRYVTYRYVV
Sbjct: 184 QVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of Cla97C01G009630 vs. Swiss-Prot
Match: sp|A8XGH1|RPAB1_CAEBR (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae OX=6238 GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-25
Identity = 60/84 (71.43%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 33  HFLMQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLK 92
           HFL  EAELMVNI  H L+PEH  +T EEK  LL RY +K++QLPRIQ  DP+ARY+GL+
Sbjct: 130 HFL--EAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLR 189

Query: 93  RGQVVKIIRPSETAGRYVTYRYVV 117
           RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 190 RGQVVKIIRPSETAGRYITYRLVV 211

[Close]

BLAST of Cla97C01G009630 vs. Swiss-Prot
Match: sp|Q9N5K2|RPAB1_CAEEL (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans OX=6239 GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-25
Identity = 60/84 (71.43%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 33  HFLMQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLK 92
           HFL  EAELMVNI  H L+PEH  +T EEK  LL RY +K++QLPRIQ  DP+ARY+GL+
Sbjct: 130 HFL--EAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLR 189

Query: 93  RGQVVKIIRPSETAGRYVTYRYVV 117
           RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 190 RGQVVKIIRPSETAGRYITYRLVV 211

[Close]

BLAST of Cla97C01G009630 vs. Swiss-Prot
Match: sp|Q54EH2|RPAB1_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc1 OS=Dictyostelium discoideum OX=44689 GN=polr2e PE=3 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 2.5e-24
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 38  EAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVV 97
           EAEL+VNI +H L+P+H  LT EEK  LL RY +KE+QLPRIQ  DP+ARYYGL RG VV
Sbjct: 119 EAELLVNITHHQLVPKHILLTKEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSRGHVV 178

Query: 98  KIIRPSETAGRYVTYRYVV 117
           KI+RPSETAGRY+TYR  V
Sbjct: 179 KIVRPSETAGRYITYRLCV 197

[Close]

BLAST of Cla97C01G009630 vs. Swiss-Prot
Match: sp|Q80UW8|RPAB1_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.0e-23
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 34  FLMQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKR 93
           FL Q  EL++NI  H L+PEH  +T EE   LL RY ++E+QLPRIQ  DP+ARY+G+KR
Sbjct: 130 FLQQ--ELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKR 189

Query: 94  GQVVKIIRPSETAGRYVTYRYV 116
           GQVVKIIRPSETAGRY+TYR V
Sbjct: 190 GQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Cla97C01G009630 vs. TAIR10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein)

HSP 1 Score: 147.1 bits (370), Expect = 6.6e-36
Identity = 73/82 (89.02%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 35  LMQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRG 94
           + QEAE++VNIK HVL+PEHQ LT EEKKTLLERYTVKETQLPRIQVTDPIARY+GLKRG
Sbjct: 124 VFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRG 183

Query: 95  QVVKIIRPSETAGRYVTYRYVV 117
           QVVKIIRPSETAGRYVTYRYVV
Sbjct: 184 QVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of Cla97C01G009630 vs. TAIR10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D)

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-16
Identity = 38/81 (46.91%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 35  LMQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRG 94
           L +  +L+VN+  HVL P+HQ L ++EK++LL++++++E QLPR+   DPI RYYGL+ G
Sbjct: 137 LFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETG 196

Query: 95  QVVKIIRPSETAGRYVTYRYV 116
           QV+K+    E +  +VTYR V
Sbjct: 197 QVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of Cla97C01G009630 vs. TAIR10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein)

HSP 1 Score: 78.2 bits (191), Expect = 3.8e-15
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 35  LMQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRG 94
           + Q  +L+VNI  H L P+HQ L +EEK TLL++++++E QLPRI   D I RYYGL++G
Sbjct: 141 IFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKG 200

Query: 95  QVVKIIRPSETAGRYVTYRYV 116
           QVVK+    E    +V +R V
Sbjct: 201 QVVKVNYRGELTESHVAFRCV 221

[Close]

BLAST of Cla97C01G009630 vs. TAIR10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E)

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-12
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 40  ELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKI 99
           +L+VNI  H+  P+ + L  EEK+ LL ++ +++ QLP +Q  D   RYYGLK+ QVVKI
Sbjct: 157 DLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQVVKI 216

Query: 100 IRPSETAGRYVTYRYVV 117
               E  G +VTYR ++
Sbjct: 217 TYSKEPVGDFVTYRCII 233

[Close]

BLAST of Cla97C01G009630 vs. TAIR10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C)

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-12
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 35  LMQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRG 94
           + +EAEL+ NI  H L+ ++  L ++ K              PRI VTDP+ARYYGLKRG
Sbjct: 129 VFEEAELVTNITEHKLVNKYYVLDDQAKXXXXXXXXXXXXXXPRILVTDPLARYYGLKRG 188

Query: 95  QVVKIIRPSETAGRYVTYRYVV 117
           QVVKI R   T+  Y TYR+ V
Sbjct: 189 QVVKIRRSDATSLDYYTYRFAV 210

The following BLAST results are available for this feature:

BLAST of Cla97C01G009630 vs. NCBI nr


Match Name	E-value	Identity	Description
GAY49602.1	5.1e-34	91.57	hypothetical protein CUMW_120350 [Citrus unshiu] >GAY49603.1 hypothetical protei...	[more]
XP_022955185.1	1.1e-33	92.68	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_...	[more]
XP_023541037.1	1.1e-33	92.68	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pe...	[more]
XP_008451219.1	1.5e-33	91.46	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo]	[more]
XP_022037585.1	1.5e-33	90.24	DNA-directed RNA polymerases II and IV subunit 5A-like [Helianthus annuus] >OTG2...	[more]

BLAST of Cla97C01G009630 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2H5PB69\|A0A2H5PB69_CITUN	3.4e-34	91.57	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_120350 PE=3 SV=1	[more]
tr\|A0A2U1MFI7\|A0A2U1MFI7_ARTAN	9.8e-34	90.24	DNA-directed RNA polymerase, RPB5 subunit OS=Artemisia annua OX=35608 GN=CTI12_A...	[more]
tr\|A0A251UMR2\|A0A251UMR2_HELAN	9.8e-34	90.24	Putative eukaryotic rpb5 RNA polymerase subunit family protein OS=Helianthus ann...	[more]
tr\|A0A1S3BS23\|A0A1S3BS23_CUCME	9.8e-34	91.46	DNA-directed RNA polymerases II and IV subunit 5A OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A2U1L243\|A0A2U1L243_ARTAN	9.8e-34	90.24	Eukaryotic rpb5 RNA polymerase subunit family protein OS=Artemisia annua OX=3560...	[more]

BLAST of Cla97C01G009630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O81098\|RPB5A_ARATH	1.2e-34	89.02	DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=370...	[more]
sp\|A8XGH1\|RPAB1_CAEBR	1.3e-25	71.43	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis bri...	[more]
sp\|Q9N5K2\|RPAB1_CAEEL	1.3e-25	71.43	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis ele...	[more]
sp\|Q54EH2\|RPAB1_DICDI	2.5e-24	69.62	DNA-directed RNA polymerases I, II, and III subunit rpabc1 OS=Dictyostelium disc...	[more]
sp\|Q80UW8\|RPAB1_MOUSE	8.0e-23	65.85	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10...	[more]

BLAST of Cla97C01G009630 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22320.1	6.6e-36	89.02	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT2G41340.1	2.0e-16	46.91	RNA polymerase II fifth largest subunit, D	[more]
AT3G57080.1	3.8e-15	48.15	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT3G54490.1	1.7e-12	44.16	RNA polymerase II fifth largest subunit, E	[more]
AT5G57980.1	1.7e-12	46.34	RNA polymerase II fifth largest subunit, C	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003899	DNA-directed RNA polymerase activity
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR020609	RpoH/RPB5
IPR035913	RPB5-like
IPR000783	RNA_pol_subH/Rpb5_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G009630.1	Cla97C01G009630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 43..115 e-value: 2.8E-35 score: 119.8
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PRODOM	PD005155		coord: 50..115 e-value: 4.0E-30 score: 321.0
IPR035913	RPB5-like RNA polymerase subunit	GENE3D	G3DSA:3.90.940.20		coord: 44..116 e-value: 2.0E-35 score: 122.3
IPR035913	RPB5-like RNA polymerase subunit	SUPERFAMILY	SSF55287	RPB5-like RNA polymerase subunit	coord: 41..116
None	No IPR available	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 36..116
IPR020609	Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit	HAMAP	MF_00025	RNApol_RpoH_RPB5	coord: 43..116 score: 22.154

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G009630	Cucurbita moschata (Rifu)	cmowmbB195
Cla97C01G009630	Cucurbita moschata (Rifu)	cmowmbB377
Cla97C01G009630	Wild cucumber (PI 183967)	cpiwmbB011
Cla97C01G009630	Cucumber (Chinese Long) v3	cucwmbB010
Cla97C01G009630	Cucumber (Chinese Long) v2	cuwmbB011
Cla97C01G009630	Bottle gourd (USVL1VR-Ls)	lsiwmbB153
Cla97C01G009630	Melon (DHL92) v3.6.1	medwmbB131
Cla97C01G009630	Melon (DHL92) v3.5.1	mewmbB141
Cla97C01G009630	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G009630	Watermelon (97103) v1	wmwmbB247
Cla97C01G009630	Wax gourd	wgowmbB458
Cla97C01G009630	Silver-seed gourd	carwmbB1007
Cla97C01G009630	Cucumber (Gy14) v2	cgybwmbB011
Cla97C01G009630	Cucumber (Gy14) v1	cgywmbB035
Cla97C01G009630	Cucurbita maxima (Rimu)	cmawmbB213
Cla97C01G009630	Cucurbita maxima (Rimu)	cmawmbB394