Cla97C01G008560 (gene) Watermelon (97103) v2

Overview
NameCla97C01G008560
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCla97Chr01 : 8960684 .. 8961232 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCCAAGACTGTATCCTCCGCTCTTTCCCCACCTCCTTCCAAACCCAAGCTCTCGTCTCTGTTTCTCTTTACTCACCCACAAACAATTGCTTCTTCAGATCCCCAAAATCCATCTCCTACTACTTCCAAATCCCCACATCTCCTCTCCAAACCCACTGTATCACCCCATTTTTCCCCCAAAAATTCAACTGCAGGGCTCTCCTTTCAACAACGGCATCGGACTTTCCTTCAGAATTACAAGACAGGTAATTTTACCGCATCAGAAGCATTACAATTCTTTGACCTATCGATGAATGCAAATCCTACCCCTGCCATGTCTTCATTCAATCTTGTACTTAGTGGACTTGCTAAGATTAAGCACTACTCTGAGGTTTTTCAGCTGTATTATAGAATTAGCTTAGCCGGACTTCTGCCTAATCTCATCACGCTTAATGTTCTGGTTAATTGCCTTTGTAATGTGAATCGGGTTAGTGAAGGTCTTGCAGCCATGGCGGGGATTATAAGGAGAGGTTATACTCCCAATACAGTGACATATACGTCTTGA

mRNA sequence

ATGGTTTCCAAGACTGTATCCTCCGCTCTTTCCCCACCTCCTTCCAAACCCAAGCTCTCGTCTCTGTTTCTCTTTACTCACCCACAAACAATTGCTTCTTCAGATCCCCAAAATCCATCTCCTACTACTTCCAAATCCCCACATCTCCTCTCCAAACCCACTGTATCACCCCATTTTTCCCCCAAAAATTCAACTGCAGGGCTCTCCTTTCAACAACGGCATCGGACTTTCCTTCAGAATTACAAGACAGGTAATTTTACCGCATCAGAAGCATTACAATTCTTTGACCTATCGATGAATGCAAATCCTACCCCTGCCATGTCTTCATTCAATCTTGTACTTAGTGGACTTGCTAAGATTAAGCACTACTCTGAGGTTTTTCAGCTGTATTATAGAATTAGCTTAGCCGGACTTCTGCCTAATCTCATCACGCTTAATGTTCTGGTTAATTGCCTTTGTAATGTGAATCGGGTTAGTGAAGGTCTTGCAGCCATGGCGGGGATTATAAGGAGAGGTTATACTCCCAATACAGTGACATATACGTCTTGA

Coding sequence (CDS)

ATGGTTTCCAAGACTGTATCCTCCGCTCTTTCCCCACCTCCTTCCAAACCCAAGCTCTCGTCTCTGTTTCTCTTTACTCACCCACAAACAATTGCTTCTTCAGATCCCCAAAATCCATCTCCTACTACTTCCAAATCCCCACATCTCCTCTCCAAACCCACTGTATCACCCCATTTTTCCCCCAAAAATTCAACTGCAGGGCTCTCCTTTCAACAACGGCATCGGACTTTCCTTCAGAATTACAAGACAGGTAATTTTACCGCATCAGAAGCATTACAATTCTTTGACCTATCGATGAATGCAAATCCTACCCCTGCCATGTCTTCATTCAATCTTGTACTTAGTGGACTTGCTAAGATTAAGCACTACTCTGAGGTTTTTCAGCTGTATTATAGAATTAGCTTAGCCGGACTTCTGCCTAATCTCATCACGCTTAATGTTCTGGTTAATTGCCTTTGTAATGTGAATCGGGTTAGTGAAGGTCTTGCAGCCATGGCGGGGATTATAAGGAGAGGTTATACTCCCAATACAGTGACATATACGTCTTGA

Protein sequence

MVSKTVSSALSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKPTVSPHFSPKNSTAGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTS
Homology
[Close]
BLAST of Cla97C01G008560 vs. NCBI nr
Match: XP_022992036.1 (pentatricopeptide repeat-containing protein At1g63330-like [Cucurbita maxima])

HSP 1 Score: 145.6 bits (366), Expect = 1.7e-31
Identity = 87/129 (67.44%), Postives = 98/129 (75.97%), Query Frame = 0 

Query: 1   MVSKTVSSALS----PPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKP--- 60
           MVSKTV+SA+S    P PSK KLSS  LFTHP  IASS PQNPSP +++SP ++SKP   
Sbjct: 1   MVSKTVASAISSSLLPAPSKGKLSS--LFTHPTIIASSKPQNPSPISAESPPVISKPPNS 60

Query: 61  TVSPHFSPKNSTAGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLV 120
            VSP  S + ST  +SF +R RTFLQN KTGNFT SEALQFFDL M ANPTPAMSSFNL+
Sbjct: 61  NVSPEVSLEKSTTEISFHERLRTFLQNCKTGNFTVSEALQFFDLMMLANPTPAMSSFNLL 120

Query: 121 LSGLAKIKH 123
           L GLAK KH
Sbjct: 121 LGGLAKTKH 127

[Close]
BLAST of Cla97C01G008560 vs. NCBI nr
Match: XP_022953742.1 (putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Cucurbita moschata])

HSP 1 Score: 140.6 bits (353), Expect = 5.3e-30
Identity = 82/124 (66.13%), Postives = 93/124 (75.00%), Query Frame = 0 

Query: 2   VSKTVSSALSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKP---TVSPH 61
           V+  +SS+LSP PSK KLSS  LFT P  IASS+PQNPSP  ++SP ++SKP    VSP 
Sbjct: 6   VASAISSSLSPAPSKGKLSS--LFTRPPIIASSNPQNPSPIPAESPPIISKPPNSNVSPE 65

Query: 62  FSPKNSTAGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLA 121
            S + ST  +SF  R RTFLQN KTGNFT SEALQFFDL M ANPTPAMSSFNL+L GLA
Sbjct: 66  VSLEKSTTEISFHGRLRTFLQNCKTGNFTVSEALQFFDLMMLANPTPAMSSFNLLLGGLA 125

Query: 122 KIKH 123
           K KH
Sbjct: 126 KTKH 127

[Close]
BLAST of Cla97C01G008560 vs. NCBI nr
Match: XP_023548637.1 (pentatricopeptide repeat-containing protein At1g63330-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.0 bits (349), Expect = 1.6e-29
Identity = 86/130 (66.15%), Postives = 96/130 (73.85%), Query Frame = 0 

Query: 1   MVSKTV----SSALSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKP--- 60
           MVSKTV    SS+LSP PSK KLSS  L T P  IASS+PQN SP  ++SP ++SKP   
Sbjct: 1   MVSKTVASAISSSLSPAPSKGKLSS--LVTRPLRIASSNPQNLSPIPAESPPIISKPPNS 60

Query: 61  TVSPHFSPKNSTAGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLV 120
            VSP  S + ST  +SF +R RTFLQN KTGNFTASEA QFFDL M ANPTPAMSSFNL+
Sbjct: 61  NVSPEVSLEKSTTEISFHERLRTFLQNCKTGNFTASEAFQFFDLMMLANPTPAMSSFNLL 120

Query: 121 LSGLAKIKHY 124
           L GLAK KHY
Sbjct: 121 LGGLAKTKHY 128

[Close]
BLAST of Cla97C01G008560 vs. NCBI nr
Match: XP_022155826.1 (pentatricopeptide repeat-containing protein At1g63330-like [Momordica charantia])

HSP 1 Score: 131.0 bits (328), Expect = 4.2e-27
Identity = 82/132 (62.12%), Postives = 93/132 (70.45%), Query Frame = 0 

Query: 1   MVSKTVSSA------LSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLS--- 60
           MVSK+V+SA       S  P+K KLSS  LFT    I SS+PQ    ++SK P LLS   
Sbjct: 1   MVSKSVASASSVVAVSSSAPAKGKLSS--LFTQSPRIRSSNPQVSPGSSSKRPPLLSRPP 60

Query: 61  KPTVSPHFSPKNSTAGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFN 120
           KPTVSP  SP+  T G+SFQ RHRTFLQN KTGN TA+EALQFFDL +   PTPAMSSFN
Sbjct: 61  KPTVSPEDSPEELTTGISFQDRHRTFLQNCKTGNVTAAEALQFFDLMLRTKPTPAMSSFN 120

Query: 121 LVLSGLAKIKHY 124
           L+L GLAKIKHY
Sbjct: 121 LLLGGLAKIKHY 130

[Close]
BLAST of Cla97C01G008560 vs. NCBI nr
Match: XP_008451225.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis melo] >XP_016901074.1 PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 7.5e-24
Identity = 59/92 (64.13%), Postives = 73/92 (79.35%), Query Frame = 0 

Query: 77  FLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLA 136
           FL+N KTGN TA++A  FFDL + + P P +SSF+ +L GLAKIKHYS +F LY ++ LA
Sbjct: 10  FLRNCKTGNITATQAFHFFDLMLRSYPIPPISSFDCLLGGLAKIKHYSLLFSLYNKMRLA 69

Query: 137 GLLPNLITLNVLVNCLCNVNRVSEGLAAMAGI 169
           GL P+ ITLN+LVNCLCNVNRVSE LA MAG+
Sbjct: 70  GLSPSAITLNILVNCLCNVNRVSEALAGMAGL 101

[Close]
BLAST of Cla97C01G008560 vs. TrEMBL
Match: tr|A0A1S4DYL6|A0A1S4DYL6_CUCME (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492586 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.9e-24
Identity = 59/92 (64.13%), Postives = 73/92 (79.35%), Query Frame = 0 

Query: 77  FLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLA 136
           FL+N KTGN TA++A  FFDL + + P P +SSF+ +L GLAKIKHYS +F LY ++ LA
Sbjct: 10  FLRNCKTGNITATQAFHFFDLMLRSYPIPPISSFDCLLGGLAKIKHYSLLFSLYNKMRLA 69

Query: 137 GLLPNLITLNVLVNCLCNVNRVSEGLAAMAGI 169
           GL P+ ITLN+LVNCLCNVNRVSE LA MAG+
Sbjct: 70  GLSPSAITLNILVNCLCNVNRVSEALAGMAGL 101

[Close]
BLAST of Cla97C01G008560 vs. TrEMBL
Match: tr|A0A059A8Z6|A0A059A8Z6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K03302 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-19
Identity = 73/183 (39.89%), Postives = 100/183 (54.64%), Query Frame = 0 

Query: 1   MVSKTVSSALSP-PPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKPTVSPHF 60
           M SK + S+ SP   S+ KLSSLF +   +   S +P+   P    SP     P      
Sbjct: 1   MASKALRSSSSPVSASEGKLSSLFTYPRRRNPRSREPRQ-EPAVEISP----PPPQKSEL 60

Query: 61  SPKNSTAGLSFQQRHRTFLQ-NYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLA 120
           S +N+T     + R   FL+   K+G+FT  EAL  FD  ++  P P  SSF L+L  LA
Sbjct: 61  SDRNTTQ--EDRTRLALFLETKCKSGDFTVGEALHHFDRMVSMRPAPPASSFRLLLGALA 120

Query: 121 KIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTV 180
           K  H S V  L  ++  AGLL + I LN+L+NC CN  RV++G A +  + RRG+ PNTV
Sbjct: 121 KNSHCSAVISLRAKLESAGLLSDYIVLNILLNCCCNARRVADGFAVLGAMFRRGHCPNTV 176

Query: 181 TYT 182
           +YT
Sbjct: 181 SYT 176

[Close]
BLAST of Cla97C01G008560 vs. TrEMBL
Match: tr|A0A2P5AN71|A0A2P5AN71_PARAD (Tetratricopeptide-like helical domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_315980 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19
Identity = 75/168 (44.64%), Postives = 94/168 (55.95%), Query Frame = 0 

Query: 3   SKTVSSALSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHL--LSKPTVS--PH 62
           S  V S+ S      KLSS  LFT P+   S  P N    ++K   L  L++ T S  P 
Sbjct: 13  STAVPSSSSKTAPICKLSS--LFTSPKRPKSPKPGNSEKNSNKMASLSALTRKTTSSNPK 72

Query: 63  FSPKNSTAGLSFQQRHRTFLQ-NYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGL 122
            S K S      Q R + FL  N K+GN T  + L +FD  +   PTP +SSFN +L  L
Sbjct: 73  NSLKISIPNAPVQNRLQKFLNTNCKSGNVTLPQVLHYFDELVRMKPTPPVSSFNRLLVAL 132

Query: 123 AKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAM 166
           AK KHY +V  LY R+   GLLPN +TLNVL+NC CN+NRVS+G  AM
Sbjct: 133 AKNKHYDDVLSLYTRMHANGLLPNFLTLNVLINCFCNLNRVSDGFVAM 178

[Close]
BLAST of Cla97C01G008560 vs. TrEMBL
Match: tr|A0A2I4F6F7|A0A2I4F6F7_9ROSI (putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial isoform X1 OS=Juglans regia OX=51240 GN=LOC108995979 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.1e-19
Identity = 63/159 (39.62%), Postives = 87/159 (54.72%), Query Frame = 0 

Query: 16  KPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKPTVSPHFSPKNSTAGLSFQQRHR 75
           K KLSSLF + H  T +++D     P     PH   KP  SP    +N  +    Q    
Sbjct: 39  KGKLSSLFRYAHEPTTSNTDSSQKEP----CPH---KPISSPKIVQRNLLSDAHVQIPVE 98

Query: 76  TFLQNY-KTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRIS 135
            FL+   K+ N T +EAL  FD  +   P P + SFN +L  +++ KHYS V  L+ R+ 
Sbjct: 99  KFLKTISKSSNITLNEALHLFDHMLRLQPAPPIPSFNHLLGAVSRNKHYSSVISLFKRMQ 158

Query: 136 LAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGY 174
            +GL  ++ TLN+L+NC CNVNRV +G   M  I+RRGY
Sbjct: 159 SSGLPSSIFTLNILLNCFCNVNRVCDGFVVMGSILRRGY 190

[Close]
BLAST of Cla97C01G008560 vs. TrEMBL
Match: tr|A0A2P6PVI5|A0A2P6PVI5_ROSCH (Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0289191 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.7e-19
Identity = 68/153 (44.44%), Postives = 94/153 (61.44%), Query Frame = 0 

Query: 15  SKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKPTVS-PHFSPKNSTAGLSFQQR 74
           SK KLSS  LFT+P+   SS+    S +   +  ++ +PT S P  S +  +  +  Q  
Sbjct: 4   SKGKLSS--LFTNPERPTSSNSSKLS-SLFFTTQVIPRPTSSYPTTSTEAPSPSVPIQTP 63

Query: 75  HRTFLQ-NYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYR 134
              FLQ N K+GNFT +EAL +FD  +   P P M+SFN +L GLAK KHYS VF    +
Sbjct: 64  LEHFLQTNCKSGNFTLNEALHYFDRMILMQPVPPMASFNRLLGGLAKSKHYSHVFSFCIK 123

Query: 135 ISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAM 166
           ++ +GLLP+ ITLN+L+NC CNV RV + L A+
Sbjct: 124 LTSSGLLPDFITLNILLNCFCNVKRVCDALVAL 153

[Close]
BLAST of Cla97C01G008560 vs. Swiss-Prot
Match: sp|P0C7Q7|PPR38_ARATH (Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12700 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-07
Identity = 28/119 (23.53%), Postives = 61/119 (51.26%), Query Frame = 0 

Query: 64  STAGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHY 123
           S   + F++R R+ + + K       +A+  F   + + P P++  F+   S +A+ K +
Sbjct: 50  SNGNVCFRERLRSGIVDIK-----KDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQF 109

Query: 124 SEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTS 183
           + V     ++ L G+  N+ TLN+++NC C   +     + +  +++ GY P+T T+ +
Sbjct: 110 NLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNT 163

[Close]
BLAST of Cla97C01G008560 vs. Swiss-Prot
Match: sp|Q0WKV3|PPR36_ARATH (Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12300 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.3e-07
Identity = 33/106 (31.13%), Postives = 57/106 (53.77%), Query Frame = 0 

Query: 64  STAGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHY 123
           S   LS+++R R+ L + K     A +A+  F   +++ P P +  F+ + S +AK K Y
Sbjct: 50  SDRNLSYRERLRSGLVDIK-----ADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQY 109

Query: 124 SEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGII 170
             V  L  ++ L G+  NL TL++++NC C   ++    +AM  II
Sbjct: 110 DLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKII 150

[Close]
BLAST of Cla97C01G008560 vs. Swiss-Prot
Match: sp|Q9SZ20|PP339_ARATH (Pentatricopeptide repeat-containing protein At4g26800 OS=Arabidopsis thaliana OX=3702 GN=At4g26800 PE=2 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 6.9e-05
Identity = 29/89 (32.58%), Postives = 47/89 (52.81%), Query Frame = 0 

Query: 85  NFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLA---GLLPN 144
           N    +A   F L   + P P++  FN VL+ +AK++ Y  V  L+ RI  A    + P+
Sbjct: 63  NIKFDDAFHLFVLMAYSYPLPSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPD 122

Query: 145 LITLNVLVNCLCNVNRVSEGLAAMAGIIR 171
           L T N+LVNC C   + S  L+ +  +++
Sbjct: 123 LYTCNILVNCFCRCFQPSSALSYLGKMMK 151

[Close]
BLAST of Cla97C01G008560 vs. TAIR10
Match: AT1G12700.1 (ATP binding;nucleic acid binding;helicases)

HSP 1 Score: 57.8 bits (138), Expect = 8.2e-09
Identity = 28/119 (23.53%), Postives = 61/119 (51.26%), Query Frame = 0 

Query: 64  STAGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHY 123
           S   + F++R R+ + + K       +A+  F   + + P P++  F+   S +A+ K +
Sbjct: 50  SNGNVCFRERLRSGIVDIK-----KDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQF 109

Query: 124 SEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTS 183
           + V     ++ L G+  N+ TLN+++NC C   +     + +  +++ GY P+T T+ +
Sbjct: 110 NLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNT 163

[Close]
BLAST of Cla97C01G008560 vs. TAIR10
Match: AT1G12300.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-08
Identity = 33/106 (31.13%), Postives = 57/106 (53.77%), Query Frame = 0 

Query: 64  STAGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHY 123
           S   LS+++R R+ L + K     A +A+  F   +++ P P +  F+ + S +AK K Y
Sbjct: 50  SDRNLSYRERLRSGLVDIK-----ADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQY 109

Query: 124 SEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGII 170
             V  L  ++ L G+  NL TL++++NC C   ++    +AM  II
Sbjct: 110 DLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKII 150

[Close]
BLAST of Cla97C01G008560 vs. TAIR10
Match: AT5G41170.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 42.7 bits (99), Expect = 2.7e-04
Identity = 21/65 (32.31%), Postives = 37/65 (56.92%), Query Frame = 0 

Query: 89  SEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVL 148
           +EAL  F   + + P P++  F  +L+ +AK+K +  V  L   + + G+  +L T N+L
Sbjct: 54  NEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLL 113

Query: 149 VNCLC 154
           +NC C
Sbjct: 114 MNCFC 118

The following BLAST results are available for this feature:
BLAST of Cla97C01G008560 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022992036.11.7e-3167.44pentatricopeptide repeat-containing protein At1g63330-like [Cucurbita maxima][more]
XP_022953742.15.3e-3066.13putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [C... [more]
XP_023548637.11.6e-2966.15pentatricopeptide repeat-containing protein At1g63330-like [Cucurbita pepo subsp... [more]
XP_022155826.14.2e-2762.12pentatricopeptide repeat-containing protein At1g63330-like [Momordica charantia][more]
XP_008451225.17.5e-2464.13PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-... [more]
BLAST of Cla97C01G008560 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DYL6|A0A1S4DYL6_CUCME4.9e-2464.13pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cuc... [more]
tr|A0A059A8Z6|A0A059A8Z6_EUCGR1.3e-1939.89Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K03302 PE=4 SV... [more]
tr|A0A2P5AN71|A0A2P5AN71_PARAD1.6e-1944.64Tetratricopeptide-like helical domain containing protein OS=Parasponia andersoni... [more]
tr|A0A2I4F6F7|A0A2I4F6F7_9ROSI2.1e-1939.62putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial is... [more]
tr|A0A2P6PVI5|A0A2P6PVI5_ROSCH3.7e-1944.44Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinen... [more]
BLAST of Cla97C01G008560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P0C7Q7|PPR38_ARATH1.5e-0723.53Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS... [more]
sp|Q0WKV3|PPR36_ARATH3.3e-0731.13Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidop... [more]
sp|Q9SZ20|PP339_ARATH6.9e-0532.58Pentatricopeptide repeat-containing protein At4g26800 OS=Arabidopsis thaliana OX... [more]
BLAST of Cla97C01G008560 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G12700.18.2e-0923.53ATP binding;nucleic acid binding;helicases[more]
AT1G12300.11.8e-0831.13Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G41170.12.7e-0432.31Pentatricopeptide repeat (PPR-like) superfamily protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G008560.1Cla97C01G008560.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 70..182
e-value: 2.9E-16
score: 61.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 109..141
e-value: 0.001
score: 17.1
coord: 143..177
e-value: 3.1E-4
score: 18.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 141..175
score: 9.131
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 106..140
score: 8.199
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..66
NoneNo IPR availablePANTHERPTHR44149:SF3SUBFAMILY NOT NAMEDcoord: 82..181
NoneNo IPR availablePANTHERPTHR44149FAMILY NOT NAMEDcoord: 82..181

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G008560ClCG01G008220Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G008560Bhi12G001013Wax gourdwgowmbB067
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G008560Silver-seed gourdcarwmbB0551
Cla97C01G008560Silver-seed gourdcarwmbB0859
Cla97C01G008560Silver-seed gourdcarwmbB0858
Cla97C01G008560Cucumber (Gy14) v2cgybwmbB322
Cla97C01G008560Cucurbita maxima (Rimu)cmawmbB287
Cla97C01G008560Cucurbita maxima (Rimu)cmawmbB289
Cla97C01G008560Cucurbita maxima (Rimu)cmawmbB705
Cla97C01G008560Cucurbita moschata (Rifu)cmowmbB269
Cla97C01G008560Cucurbita moschata (Rifu)cmowmbB271
Cla97C01G008560Cucurbita moschata (Rifu)cmowmbB676
Cla97C01G008560Wild cucumber (PI 183967)cpiwmbB353
Cla97C01G008560Wild cucumber (PI 183967)cpiwmbB361
Cla97C01G008560Wild cucumber (PI 183967)cpiwmbB364
Cla97C01G008560Cucumber (Chinese Long) v3cucwmbB354
Cla97C01G008560Cucumber (Chinese Long) v2cuwmbB339
Cla97C01G008560Bottle gourd (USVL1VR-Ls)lsiwmbB007
Cla97C01G008560Bottle gourd (USVL1VR-Ls)lsiwmbB009
Cla97C01G008560Melon (DHL92) v3.6.1medwmbB005
Cla97C01G008560Melon (DHL92) v3.6.1medwmbB008
Cla97C01G008560Melon (DHL92) v3.5.1mewmbB007
Cla97C01G008560Melon (DHL92) v3.5.1mewmbB009
Cla97C01G008560Watermelon (97103) v1wmwmbB237
Cla97C01G008560Wax gourdwgowmbB057