Cla97C01G007400 (gene) Watermelon (97103) v2

NameCla97C01G007400
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr01 : 7614082 .. 7614706 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCATTTCCTTATTTGCAGTTTTCATGAATGGTTGTAGTTTTTGCCAAGAAATCTTCCTAGGGTGGCAAAATTCCTGTGAAACTCAGAACATTCCTCTGATGATCTCCTTCTCTCAATTCTATGAATGCACCAAGTCCACCAACAACATAGTTCGTAGGAGGAGACCTCGGTTATTTTCTTTCTTTTATCATGATTAAACCTCAGTTGTCTTCTTCCTTAATTTTTTTTTGGAAATTACCACTCTAGTGAAGCCGCCAATAATTTTCATTTATTACCTGTTTGCTCACAAATGCAGGACCTCTCTCTTCCCTTGTTTGGCTCTTTTGATTGGTTGCCTAAGAGAATGAACGTAAGTTGGTAGATTTTTGGCCAACAATTCAAAACTTACATGTCAACGCAGGATAAATTGAAAAGCAAACAGATCAAGCCAATGAACCAGAATCCCATCTGAAATCGTCAAAACCAACTGTCATCAATCTCATCACTCGCTTTGTTCACCAGACCATTGTTGTTCTTTGGTGGATCGGTTAGTAGGTCTTCAACATGAGGGCTAAGTGGAAGAAGAAGAGAATGAGGAGATTAAAGAGGAAGCGCTGGAAGATGAGGCAGAGATCCAAGTAG

mRNA sequence

ATGAGCATTTCCTTATTTGCAGTTTTCATGAATGGTTGTAGTTTTTGCCAAGAAATCTTCCTAGGGTGGCAAAATTCCTGTGAAACTCAGAACATTCCTCTGATGATCTCCTTCTCTCAATTCTATGAATGCACCAAGTCCACCAACAACATAGTTCGTAGGAGGAGACCTCGTGAAGCCGCCAATAATTTTCATTTATTACCTGTTTGCTCACAAATGCAGGACCTCTCTCTTCCCTTGTTTGGCTCTTTTGATTGGTTGCCTAAGAGAATGAACGTCTTCAACATGAGGGCTAAGTGGAAGAAGAAGAGAATGAGGAGATTAAAGAGGAAGCGCTGGAAGATGAGGCAGAGATCCAAGTAG

Coding sequence (CDS)

ATGAGCATTTCCTTATTTGCAGTTTTCATGAATGGTTGTAGTTTTTGCCAAGAAATCTTCCTAGGGTGGCAAAATTCCTGTGAAACTCAGAACATTCCTCTGATGATCTCCTTCTCTCAATTCTATGAATGCACCAAGTCCACCAACAACATAGTTCGTAGGAGGAGACCTCGTGAAGCCGCCAATAATTTTCATTTATTACCTGTTTGCTCACAAATGCAGGACCTCTCTCTTCCCTTGTTTGGCTCTTTTGATTGGTTGCCTAAGAGAATGAACGTCTTCAACATGAGGGCTAAGTGGAAGAAGAAGAGAATGAGGAGATTAAAGAGGAAGCGCTGGAAGATGAGGCAGAGATCCAAGTAG

Protein sequence

MSISLFAVFMNGCSFCQEIFLGWQNSCETQNIPLMISFSQFYECTKSTNNIVRRRRPREAANNFHLLPVCSQMQDLSLPLFGSFDWLPKRMNVFNMRAKWKKKRMRRLKRKRWKMRQRSK
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR007836Ribosomal_L41
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G007400.1Cla97C01G007400.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007836Ribosomal protein L41PFAMPF05162Ribosomal_L41coord: 96..120
e-value: 2.1E-8
score: 34.0

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None