Cla97C01G006250 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G006250
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	RING-H2 finger protein 2B
Location	Cla97Chr01 : 6142700 .. 6143149 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTACAGAGCCAACTCAACGATTTCTCCTACCACTCTCTCCCTCTCTTCTTTCTCTCTCTCCTCGCCAATTTCGTCTCCCTTCTCCGCTCTTTCCTCTCCGCCGCCCCTCCCTCCGCCGACCACCGTCTCCCTCTCCCTGATATTTCCCCTCTCCCCCATCACCTTCATCTCAATCGCCTCCTCTCCCACCGCTACGCTCACTCCGACCACGATTCTGCCTCCGACTGCGTCGTCTGTCTCTCCCCTCTCTCCGCCGGCCACCTCGTCCGCCGCCTTCCCTGCCGCCACGTCTTCCACAAGGACTGCCTTGACGGCTGGCTTCACCATCTCAACTTCAACTGCCCTCTCTGCCGCTCTCCCCTTCTTCTAGACCAGCGCGTTCCCCTCACGCGCCACCGCTTCCGTCTCCCTGACCACGTTATCGCTTGGTTCTCTCTTCGATGA

mRNA sequence

ATGGGTTTACAGAGCCAACTCAACGATTTCTCCTACCACTCTCTCCCTCTCTTCTTTCTCTCTCTCCTCGCCAATTTCGTCTCCCTTCTCCGCTCTTTCCTCTCCGCCGCCCCTCCCTCCGCCGACCACCGTCTCCCTCTCCCTGATATTTCCCCTCTCCCCCATCACCTTCATCTCAATCGCCTCCTCTCCCACCGCTACGCTCACTCCGACCACGATTCTGCCTCCGACTGCGTCGTCTGTCTCTCCCCTCTCTCCGCCGGCCACCTCGTCCGCCGCCTTCCCTGCCGCCACGTCTTCCACAAGGACTGCCTTGACGGCTGGCTTCACCATCTCAACTTCAACTGCCCTCTCTGCCGCTCTCCCCTTCTTCTAGACCAGCGCGTTCCCCTCACGCGCCACCGCTTCCGTCTCCCTGACCACGTTATCGCTTGGTTCTCTCTTCGATGA

Coding sequence (CDS)

ATGGGTTTACAGAGCCAACTCAACGATTTCTCCTACCACTCTCTCCCTCTCTTCTTTCTCTCTCTCCTCGCCAATTTCGTCTCCCTTCTCCGCTCTTTCCTCTCCGCCGCCCCTCCCTCCGCCGACCACCGTCTCCCTCTCCCTGATATTTCCCCTCTCCCCCATCACCTTCATCTCAATCGCCTCCTCTCCCACCGCTACGCTCACTCCGACCACGATTCTGCCTCCGACTGCGTCGTCTGTCTCTCCCCTCTCTCCGCCGGCCACCTCGTCCGCCGCCTTCCCTGCCGCCACGTCTTCCACAAGGACTGCCTTGACGGCTGGCTTCACCATCTCAACTTCAACTGCCCTCTCTGCCGCTCTCCCCTTCTTCTAGACCAGCGCGTTCCCCTCACGCGCCACCGCTTCCGTCTCCCTGACCACGTTATCGCTTGGTTCTCTCTTCGATGA

Protein sequence

MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR

Homology

[Close]

BLAST of Cla97C01G006250 vs. NCBI nr
Match: XP_011655474.1 (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 4.9e-66
Identity = 128/151 (84.77%), Postives = 134/151 (88.74%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRS-FLSAAPPSADHRLPLPDISPLPHHLHL 60
           MGL +QLNDFSYHSLPLFFLSLLANF+SLLRS FLS      DHR   PD+SPLPHHLHL
Sbjct: 1   MGLHTQLNDFSYHSLPLFFLSLLANFLSLLRSAFLS----PTDHR---PDLSPLPHHLHL 60

Query: 61  NRLLSHRYAHSDH-DSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPL 120
           NRLLSH Y+HSD  DS SDCVVCLSPL AGHLVRRLPCRH+FHKDCLDGWLHHLNFNCPL
Sbjct: 61  NRLLSHPYSHSDDPDSPSDCVVCLSPLGAGHLVRRLPCRHLFHKDCLDGWLHHLNFNCPL 120

Query: 121 CRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR 150
           CRSPLL +QRVPLTRHRFRLPDHVIAWFSLR
Sbjct: 121 CRSPLLQNQRVPLTRHRFRLPDHVIAWFSLR 144

[Close]

BLAST of Cla97C01G006250 vs. NCBI nr
Match: XP_022006424.1 (E3 ubiquitin-protein ligase RHA2B-like [Helianthus annuus] >OTF99675.1 putative zinc finger, RING/FYVE/PHD-type [Helianthus annuus])

HSP 1 Score: 154.1 bits (388), Expect = 3.8e-34
Identity = 83/154 (53.90%), Postives = 100/154 (64.94%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRS----FLSAAPPSADHRLPLPDISPLPHH 60
           MGLQ+ L D S  SLPL  L+ +A  VS LRS    FL  +P  +D     P +  L HH
Sbjct: 1   MGLQNHLTDVSSDSLPLLLLATIATAVSYLRSLFFTFLGISPYPSDD----PMLLTLSHH 60

Query: 61  LHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNC 120
           L+LN LLS  Y H      SDCVVCL+ L+AG  VR+LPC HVFHK+C DGWLHHLNFNC
Sbjct: 61  LNLNSLLS--YKHDPDPVDSDCVVCLNRLTAGEHVRKLPCHHVFHKECFDGWLHHLNFNC 120

Query: 121 PLCRSPLLLDQRVPLTRHR-FRLPDHVIAWFSLR 150
           PLCRSP++ D+RV +TR R +   + VI WF  R
Sbjct: 121 PLCRSPVVFDERVVVTRRRQWWFMNDVIGWFDFR 148

[Close]

BLAST of Cla97C01G006250 vs. NCBI nr
Match: XP_010096722.1 (E3 ubiquitin-protein ligase RHA2A [Morus notabilis] >EXB65574.1 E3 ubiquitin-protein ligase RHA2A [Morus notabilis])

HSP 1 Score: 151.4 bits (381), Expect = 2.5e-33
Identity = 83/162 (51.23%), Postives = 102/162 (62.96%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPD---------IS 60
           MGLQSQLND S  S+PL  ++++AN VS +RS L    P      P+ D         + 
Sbjct: 1   MGLQSQLNDVSSDSIPLLLVAIIANCVSYVRSVLLGLLPQRFGPEPVDDGLLGSGLAGLI 60

Query: 61  PLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHH 120
            L   L+LNR+ S+RY+       SDCVVCLS L+ G  VRRL CRHVFHKDC DGWL H
Sbjct: 61  VLAEQLNLNRVFSYRYSDGGAGGGSDCVVCLSTLTPGDQVRRLSCRHVFHKDCFDGWLGH 120

Query: 121 LNFNCPLCRSPLL----LDQRVPLTRHRFRLPDHVIAWFSLR 150
           LNF+CPLCRSPL+     D+ V LTR R R+   ++AWFSLR
Sbjct: 121 LNFSCPLCRSPLVSAAAADESVELTRRR-RVGSDLVAWFSLR 161

[Close]

BLAST of Cla97C01G006250 vs. NCBI nr
Match: XP_002283507.1 (PREDICTED: E3 ubiquitin-protein ligase RHA2A [Vitis vinifera])

HSP 1 Score: 144.1 bits (362), Expect = 4.0e-31
Identity = 82/165 (49.70%), Postives = 101/165 (61.21%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSA-----------APPSADHRL---- 60
           MGLQSQLND S  S+PL  ++++AN V+ +RS L             A    D  L    
Sbjct: 1   MGLQSQLNDVSSDSIPLLLVAIIANCVAYIRSLLLGLFQSMGLSRFDADEVEDGLLGAVG 60

Query: 61  -PLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDC 120
             L  +  L   L+LNR+ S+RY   D  +ASDCVVCL  L  G  VRRL CRHVFHK+C
Sbjct: 61  SGLASLIVLAEQLNLNRVFSYRYG-EDGGAASDCVVCLCRLRDGDQVRRLACRHVFHKEC 120

Query: 121 LDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR 150
            DGWL HLNFNCPLCRSPL+ D+RV LT+   R+   ++ WFSLR
Sbjct: 121 FDGWLDHLNFNCPLCRSPLVSDERVALTQR--RVGGDLVTWFSLR 162

[Close]

BLAST of Cla97C01G006250 vs. NCBI nr
Match: XP_021299391.1 (E3 ubiquitin-protein ligase RHA2A [Herrania umbratica])

HSP 1 Score: 141.4 bits (355), Expect = 2.6e-30
Identity = 78/167 (46.71%), Postives = 97/167 (58.08%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDISP-------- 60
           MGLQSQLND S  S+PL  ++L+AN +  LR+ L     S    LP PD +P        
Sbjct: 1   MGLQSQLNDVSSDSIPLLLVALVANCLGCLRNLLLDLLQSTG-LLPCPDRTPTTIDDVGV 60

Query: 61  ----------LPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHK 120
                     +   L+LN++ S+RY        SDC+VCL  L  G  VR+L C HVFHK
Sbjct: 61  LGSGLAGLIVVAEQLNLNKVFSYRYCGGAGGGVSDCMVCLCTLRDGEQVRKLDCCHVFHK 120

Query: 121 DCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR 150
           DC DGWL HLNFNCPLCRSPL  DQRV + R   R+ + ++AWF LR
Sbjct: 121 DCFDGWLDHLNFNCPLCRSPLKTDQRVEIARR--RVSEDLLAWFPLR 164

[Close]

BLAST of Cla97C01G006250 vs. TrEMBL
Match: tr|A0A251SN01|A0A251SN01_HELAN (Putative zinc finger, RING/FYVE/PHD-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr14g0459201 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.5e-34
Identity = 83/154 (53.90%), Postives = 100/154 (64.94%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRS----FLSAAPPSADHRLPLPDISPLPHH 60
           MGLQ+ L D S  SLPL  L+ +A  VS LRS    FL  +P  +D     P +  L HH
Sbjct: 1   MGLQNHLTDVSSDSLPLLLLATIATAVSYLRSLFFTFLGISPYPSDD----PMLLTLSHH 60

Query: 61  LHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNC 120
           L+LN LLS  Y H      SDCVVCL+ L+AG  VR+LPC HVFHK+C DGWLHHLNFNC
Sbjct: 61  LNLNSLLS--YKHDPDPVDSDCVVCLNRLTAGEHVRKLPCHHVFHKECFDGWLHHLNFNC 120

Query: 121 PLCRSPLLLDQRVPLTRHR-FRLPDHVIAWFSLR 150
           PLCRSP++ D+RV +TR R +   + VI WF  R
Sbjct: 121 PLCRSPVVFDERVVVTRRRQWWFMNDVIGWFDFR 148

[Close]

BLAST of Cla97C01G006250 vs. TrEMBL
Match: tr|W9RAQ2|W9RAQ2_9ROSA (E3 ubiquitin-protein ligase RHA2A OS=Morus notabilis OX=981085 GN=L484_025840 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-33
Identity = 83/162 (51.23%), Postives = 102/162 (62.96%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPD---------IS 60
           MGLQSQLND S  S+PL  ++++AN VS +RS L    P      P+ D         + 
Sbjct: 1   MGLQSQLNDVSSDSIPLLLVAIIANCVSYVRSVLLGLLPQRFGPEPVDDGLLGSGLAGLI 60

Query: 61  PLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHH 120
            L   L+LNR+ S+RY+       SDCVVCLS L+ G  VRRL CRHVFHKDC DGWL H
Sbjct: 61  VLAEQLNLNRVFSYRYSDGGAGGGSDCVVCLSTLTPGDQVRRLSCRHVFHKDCFDGWLGH 120

Query: 121 LNFNCPLCRSPLL----LDQRVPLTRHRFRLPDHVIAWFSLR 150
           LNF+CPLCRSPL+     D+ V LTR R R+   ++AWFSLR
Sbjct: 121 LNFSCPLCRSPLVSAAAADESVELTRRR-RVGSDLVAWFSLR 161

[Close]

BLAST of Cla97C01G006250 vs. TrEMBL
Match: tr|A0A061E5S6|A0A061E5S6_THECC (RING-H2 finger A2A, putative OS=Theobroma cacao OX=3641 GN=TCM_009199 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.2e-30
Identity = 80/167 (47.90%), Postives = 96/167 (57.49%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDISP-------- 60
           MGLQSQL D S  S+PL  ++L+AN +  LR+ L     S    LP PD +P        
Sbjct: 1   MGLQSQLTDVSSDSIPLLLVALVANCLGCLRNLLLDLLQSTG-LLPCPDRTPTTIDDVGV 60

Query: 61  ----------LPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHK 120
                     L   L+LN++ S+RY        SDCVVCL  L  G  VR+L C HVFHK
Sbjct: 61  LGSGLAGLIVLAEQLNLNKVFSYRYCGGAGGGGSDCVVCLCTLRDGEQVRKLDCCHVFHK 120

Query: 121 DCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR 150
           DC DGWL HLNFNCPLCRSPL  DQRV  T    R+ + ++AWFSLR
Sbjct: 121 DCFDGWLDHLNFNCPLCRSPLKTDQRVKTTPR--RVGEDLLAWFSLR 164

[Close]

BLAST of Cla97C01G006250 vs. TrEMBL
Match: tr|A0A2P6R1G2|A0A2P6R1G2_ROSCH (Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0434111 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.2e-30
Identity = 81/168 (48.21%), Postives = 100/168 (59.52%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSA-----------APPSADHRLP--- 60
           MGLQ QL+D S  S+PL  ++++A F+  LRS L +            PP  D  L    
Sbjct: 1   MGLQGQLSDVSSDSIPLLLVAVIATFIGHLRSSLFSFLHSLGLSRLERPPPDDGLLASTV 60

Query: 61  ---LPDISPLPHHLHLNRLLSHRYAHSDHDSAS--DCVVCLSPLSAGHLVRRLPCRHVFH 120
              L  +  L   L+LNRL S+RY HS H  A+  DCVVCLS L  G  VR L CRHVFH
Sbjct: 61  GSGLAGLVVLAEQLNLNRLFSYRYDHSRHRDAAVPDCVVCLSSLKDGDQVRMLHCRHVFH 120

Query: 121 KDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR 150
           K C DGWL HLNF+CP+CRSPL+ D+RV  TR   R+   ++ WFSLR
Sbjct: 121 KHCFDGWLDHLNFSCPICRSPLVQDERVAQTRR--RVGGDLLHWFSLR 166

[Close]

BLAST of Cla97C01G006250 vs. TrEMBL
Match: tr|A0A251U0U2|A0A251U0U2_HELAN (Putative RING-H2 finger protein 2B OS=Helianthus annuus OX=4232 GN=RHA2B PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.9e-29
Identity = 80/170 (47.06%), Postives = 103/170 (60.59%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPS--ADHRLPLPDISP------ 60
           MGL +QL +FS  SLP+F L+++AN VS LRS L     S  A  R P  D++       
Sbjct: 1   MGLNNQLTEFSSDSLPIFLLAVIANGVSYLRSLLFTFLHSLGAVSRYPSEDLNDIVLFEA 60

Query: 61  ----------LPHHLHLNRLLSHRYAHSDHDS---ASDCVVCLSPLSAGHLVRRLPCRHV 120
                     L   L+LNR+ S++Y+ SD  +    SDCVVCL+  + G  VR+L CRHV
Sbjct: 61  VSSGLAGLILLADQLNLNRVFSYKYSLSDCQNPPVTSDCVVCLNGFADGDHVRKLDCRHV 120

Query: 121 FHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR 150
           FHK+C DGWL  LNF CPLCRSPL+ D+RV +TR   RL D V+ WF+ R
Sbjct: 121 FHKECFDGWLDQLNFKCPLCRSPLVTDERVVMTRR--RLVDDVMDWFAYR 168

[Close]

BLAST of Cla97C01G006250 vs. Swiss-Prot
Match: sp|Q9ZU51|RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-30
Identity = 71/124 (57.26%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDISPLPHHLHLN 60
           MGLQ QL+D S  S+PL  L+LLA F   +RS L   P SA   +   ++S L   L+LN
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLALLATFFRHVRSLL-LFPSSAPVVVVTSNLSVLADQLNLN 60

Query: 61  RLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCR 120
           RL S+RY+    ++ASDC+VCLS L  G  VR+L CRHVFHK CL+GWL HLNFNCPLCR
Sbjct: 61  RLFSYRYS---DNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCR 120

Query: 121 SPLL 125
           SPLL
Sbjct: 121 SPLL 120

[Close]

BLAST of Cla97C01G006250 vs. Swiss-Prot
Match: sp|Q9ZT50|RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.3e-29
Identity = 72/142 (50.70%), Postives = 85/142 (59.86%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDIS--------- 60
           MGLQ QL+D S  S+PL  LSLLA F++ LRSFL      ++  LP+ D+S         
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLSLLAVFINHLRSFLLRLTSKSNPNLPVDDVSIASGLANII 60

Query: 61  PLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHH 120
            L   L LNRL S+R         SDCVVCLS L  G  VR+L CRHVFHK CL+GWLH 
Sbjct: 61  VLADQLSLNRLFSYRCGDGG-GGGSDCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQ 120

Query: 121 LNFNCPLCRSPLLLDQRVPLTR 134
            NF CPLCRS L+ D  V  T+
Sbjct: 121 FNFTCPLCRSALVSDDCVSKTQ 141

[Close]

BLAST of Cla97C01G006250 vs. Swiss-Prot
Match: sp|Q9Y252|RNF6_HUMAN (E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens OX=9606 GN=RNF6 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.5e-09
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 59  LNRLLSHRYAHSDHDS--ASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNC 118
           ++ L +  Y H+  DS     C VC+S    G+ +R+LPC H FH  C+D WL   N  C
Sbjct: 611 IDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSE-NCTC 670

Query: 119 PLCRSPLL 125
           P+CR P+L
Sbjct: 671 PICRQPVL 677

[Close]

BLAST of Cla97C01G006250 vs. Swiss-Prot
Match: sp|Q8GYT9|SIS3_ARATH (E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana OX=3702 GN=SIS3 PE=2 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 6.5e-09
Identity = 25/54 (46.30%), Postives = 31/54 (57.41%), Query Frame = 0


Query: 73  DSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLD 127
           D   +C++CL     GH VR LPC H FH +C+D WL  LN  CP CR  +  D
Sbjct: 230 DDCGECLICLEEFHIGHEVRGLPCAHNFHVECIDQWL-RLNVKCPRCRCSVFPD 282

[Close]

BLAST of Cla97C01G006250 vs. Swiss-Prot
Match: sp|Q9SI09|XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.5e-09
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 76  SDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLL 126
           ++C VCLS       + +L C H+FHK CL+ W+ + N  CPLCR+PL++
Sbjct: 101 NECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRTPLVV 150

[Close]

BLAST of Cla97C01G006250 vs. TAIR10
Match: AT2G01150.1 (RING-H2 finger protein 2B)

HSP 1 Score: 134.0 bits (336), Expect = 7.4e-32
Identity = 71/124 (57.26%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDISPLPHHLHLN 60
           MGLQ QL+D S  S+PL  L+LLA F   +RS L   P SA   +   ++S L   L+LN
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLALLATFFRHVRSLL-LFPSSAPVVVVTSNLSVLADQLNLN 60

Query: 61  RLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCR 120
           RL S+RY+    ++ASDC+VCLS L  G  VR+L CRHVFHK CL+GWL HLNFNCPLCR
Sbjct: 61  RLFSYRYS---DNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCR 120

Query: 121 SPLL 125
           SPLL
Sbjct: 121 SPLL 120

[Close]

BLAST of Cla97C01G006250 vs. TAIR10
Match: AT1G15100.1 (RING-H2 finger A2A)

HSP 1 Score: 129.0 bits (323), Expect = 2.4e-30
Identity = 72/142 (50.70%), Postives = 85/142 (59.86%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDIS--------- 60
           MGLQ QL+D S  S+PL  LSLLA F++ LRSFL      ++  LP+ D+S         
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLSLLAVFINHLRSFLLRLTSKSNPNLPVDDVSIASGLANII 60

Query: 61  PLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHH 120
            L   L LNRL S+R         SDCVVCLS L  G  VR+L CRHVFHK CL+GWLH 
Sbjct: 61  VLADQLSLNRLFSYRCGDGG-GGGSDCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQ 120

Query: 121 LNFNCPLCRSPLLLDQRVPLTR 134
            NF CPLCRS L+ D  V  T+
Sbjct: 121 FNFTCPLCRSALVSDDCVSKTQ 141

[Close]

BLAST of Cla97C01G006250 vs. TAIR10
Match: AT2G04240.1 (RING/U-box superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-10
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 76  SDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLL 126
           ++C VCLS       + +L C H+FHK CL+ W+ + N  CPLCR+PL++
Sbjct: 101 NECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRTPLVV 150

[Close]

BLAST of Cla97C01G006250 vs. TAIR10
Match: AT3G47990.1 (SUGAR-INSENSITIVE 3)

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-10
Identity = 25/54 (46.30%), Postives = 31/54 (57.41%), Query Frame = 0


Query: 73  DSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLD 127
           D   +C++CL     GH VR LPC H FH +C+D WL  LN  CP CR  +  D
Sbjct: 230 DDCGECLICLEEFHIGHEVRGLPCAHNFHVECIDQWL-RLNVKCPRCRCSVFPD 282

[Close]

BLAST of Cla97C01G006250 vs. TAIR10
Match: AT1G60360.1 (RING/U-box superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-09
Identity = 33/99 (33.33%), Postives = 47/99 (47.47%), Query Frame = 0


Query: 38  PPSADHRL-PLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPC 97
           PP+++  +  LP +   P HL               +  S C VC+     G     LPC
Sbjct: 197 PPASEPTINSLPSVKITPQHL--------------TNDMSQCTVCMEEFIVGGDATELPC 256

Query: 98  RHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHR 136
           +H++HKDC+  WL  LN +CP+CR  L L   V  +R R
Sbjct: 257 KHIYHKDCIVPWL-RLNNSCPICRRDLPLVNTVAESRER 280

The following BLAST results are available for this feature:

BLAST of Cla97C01G006250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655474.1	4.9e-66	84.77	PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis sativus]	[more]
XP_022006424.1	3.8e-34	53.90	E3 ubiquitin-protein ligase RHA2B-like [Helianthus annuus] >OTF99675.1 putative ...	[more]
XP_010096722.1	2.5e-33	51.23	E3 ubiquitin-protein ligase RHA2A [Morus notabilis] >EXB65574.1 E3 ubiquitin-pro...	[more]
XP_002283507.1	4.0e-31	49.70	PREDICTED: E3 ubiquitin-protein ligase RHA2A [Vitis vinifera]	[more]
XP_021299391.1	2.6e-30	46.71	E3 ubiquitin-protein ligase RHA2A [Herrania umbratica]	[more]

BLAST of Cla97C01G006250 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A251SN01\|A0A251SN01_HELAN	2.5e-34	53.90	Putative zinc finger, RING/FYVE/PHD-type OS=Helianthus annuus OX=4232 GN=HannXRQ...	[more]
tr\|W9RAQ2\|W9RAQ2_9ROSA	1.6e-33	51.23	E3 ubiquitin-protein ligase RHA2A OS=Morus notabilis OX=981085 GN=L484_025840 PE...	[more]
tr\|A0A061E5S6\|A0A061E5S6_THECC	2.2e-30	47.90	RING-H2 finger A2A, putative OS=Theobroma cacao OX=3641 GN=TCM_009199 PE=4 SV=1	[more]
tr\|A0A2P6R1G2\|A0A2P6R1G2_ROSCH	2.2e-30	48.21	Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm...	[more]
tr\|A0A251U0U2\|A0A251U0U2_HELAN	1.9e-29	47.06	Putative RING-H2 finger protein 2B OS=Helianthus annuus OX=4232 GN=RHA2B PE=4 SV...	[more]

BLAST of Cla97C01G006250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZU51\|RHA2B_ARATH	1.3e-30	57.26	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
sp\|Q9ZT50\|RHA2A_ARATH	4.3e-29	50.70	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ...	[more]
sp\|Q9Y252\|RNF6_HUMAN	6.5e-09	41.18	E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens OX=9606 GN=RNF6 PE=1 SV=1	[more]
sp\|Q8GYT9\|SIS3_ARATH	6.5e-09	46.30	E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana OX=3702 GN=SIS3 PE=2 SV...	[more]
sp\|Q9SI09\|XERIC_ARATH	6.5e-09	44.00	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]

BLAST of Cla97C01G006250 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01150.1	7.4e-32	57.26	RING-H2 finger protein 2B	[more]
AT1G15100.1	2.4e-30	50.70	RING-H2 finger A2A	[more]
AT2G04240.1	3.6e-10	44.00	RING/U-box superfamily protein	[more]
AT3G47990.1	3.6e-10	46.30	SUGAR-INSENSITIVE 3	[more]
AT1G60360.1	1.0e-09	33.33	RING/U-box superfamily protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G006250.1	Cla97C01G006250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 78..119 e-value: 1.8E-6 score: 37.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 77..120 e-value: 3.1E-12 score: 46.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 78..120 score: 12.593
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 56..127 e-value: 2.3E-18 score: 67.2
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 1..134
None	No IPR available	PANTHER	PTHR14155:SF410	E3 UBIQUITIN-PROTEIN LIGASE RHA2A-RELATED	coord: 1..134
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 59..126

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G006250	Cla003899	Watermelon (97103) v1	wmwmbB236
Cla97C01G006250	Cucsa.280640	Cucumber (Gy14) v1	cgywmbB485
Cla97C01G006250	CmaCh04G020820	Cucurbita maxima (Rimu)	cmawmbB705
Cla97C01G006250	Carg27278	Silver-seed gourd	carwmbB0337

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G006250	Wax gourd	wgowmbB054
Cla97C01G006250	Wax gourd	wgowmbB511
Cla97C01G006250	Watermelon (97103) v2	wmbwmbB004
Cla97C01G006250	Watermelon (97103) v2	wmbwmbB025
Cla97C01G006250	Silver-seed gourd	carwmbB0830
Cla97C01G006250	Silver-seed gourd	carwmbB0870
Cla97C01G006250	Silver-seed gourd	carwmbB1108
Cla97C01G006250	Cucumber (Gy14) v2	cgybwmbB324
Cla97C01G006250	Cucumber (Gy14) v2	cgybwmbB327
Cla97C01G006250	Cucumber (Gy14) v1	cgywmbB493
Cla97C01G006250	Cucurbita maxima (Rimu)	cmawmbB286
Cla97C01G006250	Cucurbita maxima (Rimu)	cmawmbB404
Cla97C01G006250	Cucurbita maxima (Rimu)	cmawmbB711
Cla97C01G006250	Cucurbita moschata (Rifu)	cmowmbB268
Cla97C01G006250	Cucurbita moschata (Rifu)	cmowmbB388
Cla97C01G006250	Cucurbita moschata (Rifu)	cmowmbB676
Cla97C01G006250	Cucurbita moschata (Rifu)	cmowmbB683
Cla97C01G006250	Wild cucumber (PI 183967)	cpiwmbB352
Cla97C01G006250	Wild cucumber (PI 183967)	cpiwmbB358
Cla97C01G006250	Cucumber (Chinese Long) v3	cucwmbB356
Cla97C01G006250	Cucumber (Chinese Long) v3	cucwmbB359
Cla97C01G006250	Cucumber (Chinese Long) v2	cuwmbB344
Cla97C01G006250	Cucumber (Chinese Long) v2	cuwmbB341
Cla97C01G006250	Bottle gourd (USVL1VR-Ls)	lsiwmbB007
Cla97C01G006250	Bottle gourd (USVL1VR-Ls)	lsiwmbB258
Cla97C01G006250	Melon (DHL92) v3.6.1	medwmbB007
Cla97C01G006250	Melon (DHL92) v3.6.1	medwmbB038
Cla97C01G006250	Melon (DHL92) v3.5.1	mewmbB009
Cla97C01G006250	Melon (DHL92) v3.5.1	mewmbB042
Cla97C01G006250	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G006250	Watermelon (Charleston Gray)	wcgwmbB216
Cla97C01G006250	Watermelon (97103) v1	wmwmbB195