Cla97C01G004590 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G004590
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	stress-induced protein KIN2-like
Location	Cla97Chr01 : 4398655 .. 4398944 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATAACTCTCAAAATATGAGCTATCACATTGGAGAAGCTAAAGGCCAAGCACAGGTTTACTTAATTACTTCCATAGTCATTTTATCTTTTGAAATTAAGGAGTGTTTGGTAACATATTGATTTATTGTGTGATTATGTAGGAAAAGGCAAGCAATTTGATGGATAAGGCAAGTGATGCAGCTCAATCAGCCAAAGAGTCAGTGCAGGACGCAGGACAACAATTAAAGGCTAAAGCACAGGATGCAACTGACGCAGTCAAAGATGCCATAGGCATGAACAAATAA

mRNA sequence

ATGGCAGATAACTCTCAAAATATGAGCTATCACATTGGAGAAGCTAAAGGCCAAGCACAGGAAAAGGCAAGCAATTTGATGGATAAGGCAAGTGATGCAGCTCAATCAGCCAAAGAGTCAGTGCAGGACGCAGGACAACAATTAAAGGCTAAAGCACAGGATGCAACTGACGCAGTCAAAGATGCCATAGGCATGAACAAATAA

Coding sequence (CDS)

ATGGCAGATAACTCTCAAAATATGAGCTATCACATTGGAGAAGCTAAAGGCCAAGCACAGGAAAAGGCAAGCAATTTGATGGATAAGGCAAGTGATGCAGCTCAATCAGCCAAAGAGTCAGTGCAGGACGCAGGACAACAATTAAAGGCTAAAGCACAGGATGCAACTGACGCAGTCAAAGATGCCATAGGCATGAACAAATAA

Protein sequence

MADNSQNMSYHIGEAKGQAQEKASNLMDKASDAAQSAKESVQDAGQQLKAKAQDATDAVKDAIGMNK

Homology

[Close]

BLAST of Cla97C01G004590 vs. NCBI nr
Match: XP_022925433.1 (stress-induced protein KIN2-like [Cucurbita moschata])

HSP 1 Score: 52.0 bits (123), Expect = 9.2e-04
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 1  MADNSQNMSYHIGEAKGQAQEKASNLM 28
          MADNSQN+SY IGEAKGQAQEKASNLM
Sbjct: 1  MADNSQNLSYQIGEAKGQAQEKASNLM 27

[Close]

BLAST of Cla97C01G004590 vs. NCBI nr
Match: XP_022973514.1 (stress-induced protein KIN2-like [Cucurbita maxima])

HSP 1 Score: 52.0 bits (123), Expect = 9.2e-04
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 1  MADNSQNMSYHIGEAKGQAQEKASNLM 28
          MADNSQN+SY IGEAKGQAQEKASNLM
Sbjct: 1  MADNSQNLSYQIGEAKGQAQEKASNLM 27

[Close]

BLAST of Cla97C01G004590 vs. TAIR10
Match: AT5G53820.1 (Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 40.8 bits (94), Expect = 3.8e-04
Identity = 18/27 (66.67%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1  MADNSQNMSYHIGEAKGQAQEKASNLM 28
          M++NSQ+MS++ G+AKGQ QEKASNL+
Sbjct: 1  MSNNSQSMSFNAGQAKGQTQEKASNLI 27

The following BLAST results are available for this feature:

BLAST of Cla97C01G004590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925433.1	9.2e-04	92.59	stress-induced protein KIN2-like [Cucurbita moschata]	[more]
XP_022973514.1	9.2e-04	92.59	stress-induced protein KIN2-like [Cucurbita maxima]	[more]

BLAST of Cla97C01G004590 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of Cla97C01G004590 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G004590 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G53820.1	3.8e-04	66.67	Late embryogenesis abundant protein (LEA) family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G004590.1	Cla97C01G004590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 27..47
None	No IPR available	GENE3D	G3DSA:1.20.120.20		coord: 1..66 e-value: 4.6E-6 score: 28.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 1..67
None	No IPR available	PANTHER	PTHR34191:SF5	ABA-INDUCIBLE PROTEIN-LIKE-RELATED	coord: 1..67

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G004590	Silver-seed gourd	carwmbB0569
Cla97C01G004590	Cucumber (Gy14) v2	cgybwmbB319
Cla97C01G004590	Cucumber (Gy14) v1	cgywmbB208
Cla97C01G004590	Cucurbita maxima (Rimu)	cmawmbB288
Cla97C01G004590	Cucurbita moschata (Rifu)	cmowmbB270
Cla97C01G004590	Wild cucumber (PI 183967)	cpiwmbB349
Cla97C01G004590	Cucumber (Chinese Long) v3	cucwmbB351
Cla97C01G004590	Cucumber (Chinese Long) v2	cuwmbB336
Cla97C01G004590	Bottle gourd (USVL1VR-Ls)	lsiwmbB007
Cla97C01G004590	Melon (DHL92) v3.6.1	medwmbB000
Cla97C01G004590	Melon (DHL92) v3.6.1	medwmbB006
Cla97C01G004590	Melon (DHL92) v3.5.1	mewmbB002
Cla97C01G004590	Melon (DHL92) v3.5.1	mewmbB008
Cla97C01G004590	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G004590	Watermelon (97103) v1	wmwmbB245
Cla97C01G004590	Wax gourd	wgowmbB065