Cla97C01G001360 (gene) Watermelon (97103) v2

Overview
NameCla97C01G001360
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionMitochondrial import inner membrane translocase subunit Tim13, putative
LocationCla97Chr01 : 1159170 .. 1159418 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCATTTTCATCACCTTCAACCGGTTCTTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGGTTCTACCTCTCCCTTTACTTTTTTTCTTTTCTTCCAAACTTGTTTGTCAAATTACTCATATCTTGTGCGGATGTATCTGGACTTCTTAGAGTAGTCGGTTTGATGAAGGCGTTTCAATATTGGGTGTTTTGTGA

mRNA sequence

ATGGATCCATTTTCATCACCTTCAACCGGTTCTTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGAGTAGTCGGTTTGATGAAGGCGTTTCAATATTGGGTGTTTTGTGA

Coding sequence (CDS)

ATGGATCCATTTTCATCACCTTCAACCGGTTCTTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGAGTAGTCGGTTTGATGAAGGCGTTTCAATATTGGGTGTTTTGTGA

Protein sequence

MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLESSRFDEGVSILGVL
Homology
[Close]
BLAST of Cla97C01G001360 vs. NCBI nr
Match: XP_022929050.1 (uncharacterized protein LOC111435758 isoform X4 [Cucurbita moschata])

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-09
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLES 40
          MD FSSPS+GSSSQFS NEFRDQLKTQLAQAYAEEFLES
Sbjct: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLES 39

[Close]
BLAST of Cla97C01G001360 vs. NCBI nr
Match: XP_022929048.1 (uncharacterized protein LOC111435758 isoform X2 [Cucurbita moschata])

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-09
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLES 40
          MD FSSPS+GSSSQFS NEFRDQLKTQLAQAYAEEFLES
Sbjct: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLES 39

[Close]
BLAST of Cla97C01G001360 vs. NCBI nr
Match: XP_022929047.1 (uncharacterized protein LOC111435758 isoform X1 [Cucurbita moschata])

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-09
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLES 40
          MD FSSPS+GSSSQFS NEFRDQLKTQLAQAYAEEFLES
Sbjct: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLES 39

[Close]
BLAST of Cla97C01G001360 vs. NCBI nr
Match: PIM98815.1 (Mitochondrial import inner membrane translocase, subunit TIM13 [Handroanthus impetiginosus])

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-05
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLESSR 42
          MD FSSPS+GSS ++SA +  DQLK QLAQAYAEEFLE+ R
Sbjct: 1  MDSFSSPSSGSSPKYSAEDLMDQLKVQLAQAYAEEFLETVR 41

[Close]
BLAST of Cla97C01G001360 vs. NCBI nr
Match: EPS72196.1 (hypothetical protein M569_02563 [Genlisea aurea])

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-04
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLESSR 42
          MD FSSPS GS+S+ S+ +  DQLK QLAQAYAEEFLE+ R
Sbjct: 1  MDSFSSPSDGSASKISSEDLMDQLKRQLAQAYAEEFLETVR 41

[Close]
BLAST of Cla97C01G001360 vs. TrEMBL
Match: tr|A0A2N9IDJ6|A0A2N9IDJ6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50370 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-05
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 1  MDPF-SSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLE 39
          MD F SSPSTGS  QFS+ +F+DQLKTQLAQAYAEEFLE
Sbjct: 1  MDSFSSSPSTGSQPQFSSEQFKDQLKTQLAQAYAEEFLE 39

[Close]
BLAST of Cla97C01G001360 vs. TrEMBL
Match: tr|A0A2G9G0G4|A0A2G9G0G4_9LAMI (Mitochondrial import inner membrane translocase, subunit TIM13 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_28700 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-05
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLESSR 42
          MD FSSPS+GSS ++SA +  DQLK QLAQAYAEEFLE+ R
Sbjct: 1  MDSFSSPSSGSSPKYSAEDLMDQLKVQLAQAYAEEFLETVR 41

[Close]
BLAST of Cla97C01G001360 vs. TrEMBL
Match: tr|S8D476|S8D476_9LAMI (Uncharacterized protein OS=Genlisea aurea OX=192259 GN=M569_02563 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.5e-05
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLESSR 42
          MD FSSPS GS+S+ S+ +  DQLK QLAQAYAEEFLE+ R
Sbjct: 1  MDSFSSPSDGSASKISSEDLMDQLKRQLAQAYAEEFLETVR 41

The following BLAST results are available for this feature:
BLAST of Cla97C01G001360 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022929050.14.3e-0992.31uncharacterized protein LOC111435758 isoform X4 [Cucurbita moschata][more]
XP_022929048.14.3e-0992.31uncharacterized protein LOC111435758 isoform X2 [Cucurbita moschata][more]
XP_022929047.14.3e-0992.31uncharacterized protein LOC111435758 isoform X1 [Cucurbita moschata][more]
PIM98815.12.2e-0570.73Mitochondrial import inner membrane translocase, subunit TIM13 [Handroanthus imp... [more]
EPS72196.11.4e-0468.29hypothetical protein M569_02563 [Genlisea aurea][more]
BLAST of Cla97C01G001360 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2N9IDJ6|A0A2N9IDJ6_FAGSY1.1e-0579.49Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50370 PE=4 SV=1[more]
tr|A0A2G9G0G4|A0A2G9G0G4_9LAMI1.5e-0570.73Mitochondrial import inner membrane translocase, subunit TIM13 OS=Handroanthus i... [more]
tr|S8D476|S8D476_9LAMI9.5e-0568.29Uncharacterized protein OS=Genlisea aurea OX=192259 GN=M569_02563 PE=3 SV=1[more]
BLAST of Cla97C01G001360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C01G001360 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
biological_process GO:0008150 biological_process
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G001360.1Cla97C01G001360.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G001360Cla004980Watermelon (97103) v1wmwmbB235
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G001360Cucumber (Chinese Long) v2cuwmbB336
Cla97C01G001360Bottle gourd (USVL1VR-Ls)lsiwmbB007
Cla97C01G001360Melon (DHL92) v3.6.1medwmbB006
Cla97C01G001360Melon (DHL92) v3.5.1mewmbB008
Cla97C01G001360Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G001360Wax gourdwgowmbB055
Cla97C01G001360Watermelon (97103) v2wmbwmbB034
Cla97C01G001360Silver-seed gourdcarwmbB0376
Cla97C01G001360Silver-seed gourdcarwmbB0739
Cla97C01G001360Cucumber (Gy14) v2cgybwmbB319
Cla97C01G001360Cucumber (Gy14) v1cgywmbB357
Cla97C01G001360Cucurbita maxima (Rimu)cmawmbB288
Cla97C01G001360Cucurbita maxima (Rimu)cmawmbB605
Cla97C01G001360Cucurbita moschata (Rifu)cmowmbB270
Cla97C01G001360Cucurbita moschata (Rifu)cmowmbB581
Cla97C01G001360Wild cucumber (PI 183967)cpiwmbB349
Cla97C01G001360Cucumber (Chinese Long) v3cucwmbB351