Cla97C01G001360 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G001360
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Mitochondrial import inner membrane translocase subunit Tim13, putative
Location	Cla97Chr01 : 1159170 .. 1159418 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCATTTTCATCACCTTCAACCGGTTCTTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGGTTCTACCTCTCCCTTTACTTTTTTTCTTTTCTTCCAAACTTGTTTGTCAAATTACTCATATCTTGTGCGGATGTATCTGGACTTCTTAGAGTAGTCGGTTTGATGAAGGCGTTTCAATATTGGGTGTTTTGTGA

mRNA sequence

ATGGATCCATTTTCATCACCTTCAACCGGTTCTTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGAGTAGTCGGTTTGATGAAGGCGTTTCAATATTGGGTGTTTTGTGA

Coding sequence (CDS)

ATGGATCCATTTTCATCACCTTCAACCGGTTCTTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGAGTAGTCGGTTTGATGAAGGCGTTTCAATATTGGGTGTTTTGTGA

Protein sequence

MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLESSRFDEGVSILGVL

Homology

[Close]

BLAST of Cla97C01G001360 vs. NCBI nr
Match: XP_022929050.1 (uncharacterized protein LOC111435758 isoform X4 [Cucurbita moschata])

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-09
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLES 40
          MD FSSPS+GSSSQFS NEFRDQLKTQLAQAYAEEFLES
Sbjct: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLES 39

[Close]

BLAST of Cla97C01G001360 vs. NCBI nr
Match: XP_022929048.1 (uncharacterized protein LOC111435758 isoform X2 [Cucurbita moschata])

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-09
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLES 40
          MD FSSPS+GSSSQFS NEFRDQLKTQLAQAYAEEFLES
Sbjct: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLES 39

[Close]

BLAST of Cla97C01G001360 vs. NCBI nr
Match: XP_022929047.1 (uncharacterized protein LOC111435758 isoform X1 [Cucurbita moschata])

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-09
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLES 40
          MD FSSPS+GSSSQFS NEFRDQLKTQLAQAYAEEFLES
Sbjct: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLES 39

[Close]

BLAST of Cla97C01G001360 vs. NCBI nr
Match: PIM98815.1 (Mitochondrial import inner membrane translocase, subunit TIM13 [Handroanthus impetiginosus])

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-05
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLESSR 42
          MD FSSPS+GSS ++SA +  DQLK QLAQAYAEEFLE+ R
Sbjct: 1  MDSFSSPSSGSSPKYSAEDLMDQLKVQLAQAYAEEFLETVR 41

[Close]

BLAST of Cla97C01G001360 vs. NCBI nr
Match: EPS72196.1 (hypothetical protein M569_02563 [Genlisea aurea])

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-04
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLESSR 42
          MD FSSPS GS+S+ S+ +  DQLK QLAQAYAEEFLE+ R
Sbjct: 1  MDSFSSPSDGSASKISSEDLMDQLKRQLAQAYAEEFLETVR 41

[Close]

BLAST of Cla97C01G001360 vs. TrEMBL
Match: tr|A0A2N9IDJ6|A0A2N9IDJ6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50370 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-05
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1  MDPF-SSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLE 39
          MD F SSPSTGS  QFS+ +F+DQLKTQLAQAYAEEFLE
Sbjct: 1  MDSFSSSPSTGSQPQFSSEQFKDQLKTQLAQAYAEEFLE 39

[Close]

BLAST of Cla97C01G001360 vs. TrEMBL
Match: tr|A0A2G9G0G4|A0A2G9G0G4_9LAMI (Mitochondrial import inner membrane translocase, subunit TIM13 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_28700 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-05
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLESSR 42
          MD FSSPS+GSS ++SA +  DQLK QLAQAYAEEFLE+ R
Sbjct: 1  MDSFSSPSSGSSPKYSAEDLMDQLKVQLAQAYAEEFLETVR 41

[Close]

BLAST of Cla97C01G001360 vs. TrEMBL
Match: tr|S8D476|S8D476_9LAMI (Uncharacterized protein OS=Genlisea aurea OX=192259 GN=M569_02563 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.5e-05
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLESSR 42
          MD FSSPS GS+S+ S+ +  DQLK QLAQAYAEEFLE+ R
Sbjct: 1  MDSFSSPSDGSASKISSEDLMDQLKRQLAQAYAEEFLETVR 41

The following BLAST results are available for this feature:

BLAST of Cla97C01G001360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929050.1	4.3e-09	92.31	uncharacterized protein LOC111435758 isoform X4 [Cucurbita moschata]	[more]
XP_022929048.1	4.3e-09	92.31	uncharacterized protein LOC111435758 isoform X2 [Cucurbita moschata]	[more]
XP_022929047.1	4.3e-09	92.31	uncharacterized protein LOC111435758 isoform X1 [Cucurbita moschata]	[more]
PIM98815.1	2.2e-05	70.73	Mitochondrial import inner membrane translocase, subunit TIM13 [Handroanthus imp...	[more]
EPS72196.1	1.4e-04	68.29	hypothetical protein M569_02563 [Genlisea aurea]	[more]

BLAST of Cla97C01G001360 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2N9IDJ6\|A0A2N9IDJ6_FAGSY	1.1e-05	79.49	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50370 PE=4 SV=1	[more]
tr\|A0A2G9G0G4\|A0A2G9G0G4_9LAMI	1.5e-05	70.73	Mitochondrial import inner membrane translocase, subunit TIM13 OS=Handroanthus i...	[more]
tr\|S8D476\|S8D476_9LAMI	9.5e-05	68.29	Uncharacterized protein OS=Genlisea aurea OX=192259 GN=M569_02563 PE=3 SV=1	[more]

BLAST of Cla97C01G001360 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G001360 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G001360.1	Cla97C01G001360.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G001360	Cla004980	Watermelon (97103) v1	wmwmbB235

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G001360	Watermelon (97103) v2	wmbwmbB034
Cla97C01G001360	Silver-seed gourd	carwmbB0376
Cla97C01G001360	Silver-seed gourd	carwmbB0739
Cla97C01G001360	Cucumber (Gy14) v2	cgybwmbB319
Cla97C01G001360	Cucumber (Gy14) v1	cgywmbB357
Cla97C01G001360	Cucurbita maxima (Rimu)	cmawmbB288
Cla97C01G001360	Cucurbita maxima (Rimu)	cmawmbB605
Cla97C01G001360	Cucurbita moschata (Rifu)	cmowmbB270
Cla97C01G001360	Cucurbita moschata (Rifu)	cmowmbB581
Cla97C01G001360	Wild cucumber (PI 183967)	cpiwmbB349
Cla97C01G001360	Cucumber (Chinese Long) v3	cucwmbB351
Cla97C01G001360	Cucumber (Chinese Long) v2	cuwmbB336
Cla97C01G001360	Bottle gourd (USVL1VR-Ls)	lsiwmbB007
Cla97C01G001360	Melon (DHL92) v3.6.1	medwmbB006
Cla97C01G001360	Melon (DHL92) v3.5.1	mewmbB008
Cla97C01G001360	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G001360	Wax gourd	wgowmbB055