Cla97C01G000190 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G000190
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	6-phosphogluconolactonase
Location	Cla97Chr01 : 113527 .. 114709 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCTTCCCATCCAAAAACAGAGAAGAGGGTTTTTGATTCAGAGGAAGATTTGGCTGTTTCTTTGGCCAAATACATCGCCGATTTGTCTCATCACTTTGCTAATAAGAAACGTCTTTTCACCGTGGTTCTCTCATCGAATGCCTCAAGTTTCCTTTACTCCGATTCTCTCTGTCTTTTATGAACTATGTGCAACCGTAGTTGTTCGAAATTTGGAAATTACACATGTTTTTGCTCCTTTTTTGGGTCATTCAATAACTGTAAAACCACAATAACTTCAGGGATATTCAACCCTTTGATCTTTTTAGACCTTGCCAGTTACTTTTGAGATATTGTGTGAAATATTTGGTGAAAATTTCCTTGTTTATGAGATATTGATAGTAAGGGTCTCGCTTCTTTTTCTCTCTCAAAAATGTCAGGAAATTGGTGGAACCACCCTATGTTGATTCCATTGACTGGTCGATATGTCACATATTTTGGCTCGATGAGAGAGTTGTGCCCAAGACTCATGTTGACAACAACTACAAACTCGCTTATGATGGTTTTCTCTCTAAGGTTATACTAACTCTTTTTATGTTTTTTTTTTCTTCTTGTAGAAGTGGCATTGGATTTTAATTCGTGTTCTTGACTGTTGTTTTATCCCTTCGTAGAGAACTGTTTTAAGAAACAACTTTATAGTTAGTTTCTTTTAGTGTGTTTTCATGTTTGAACAACTGGCTCTCTTCATTCTTTTAACATCATACGGTTGCAATGACTATTTGAATTATAAAATAACCTCAACACTTACAAATGACTCGACCACTATTCTTAAAAACGTTTTTGAGAACAAAAGTAGACAGTTCATTTCCCTTTCCCAGGTATTTGAGATGGGAGAGTGTGTGTAGAGTTGAAGCACATGGATGCATAATGATCTCCTCTGCAAAAACTTAGGACCCTTAATTACATGTTGCTAAGATAAATTAGGAAGCATGTTGGAAGAGCTTATGTACAGAAGGGAATCTATATTTAGAGAGAGATGGGTGTTTTGAGGTTGTTTCCTGAGGGTTTTTGGTAGTATGGAATTGAATTATTGACTCATGTTTAGTTTTTTTGTTTAATGTGTTGCACAGGTTCCAATTCCCCCTGGTAATGTGTATGCCATTGATGATACTCTATCAGCTGAGGGTGCAGTTGAAGAATAA

mRNA sequence

ATGGCATCTTCCCATCCAAAAACAGAGAAGAGGGTTTTTGATTCAGAGGAAGATTTGGCTGTTTCTTTGGCCAAATACATCGCCGATTTGTCTCATCACTTTGCTAATAAGAAACGTCTTTTCACCGTGGTTCCAATTCCCCCTGGTAATGTGTATGCCATTGATGATACTCTATCAGCTGAGGGTGCAGTTGAAGAATAA

Coding sequence (CDS)

ATGGCATCTTCCCATCCAAAAACAGAGAAGAGGGTTTTTGATTCAGAGGAAGATTTGGCTGTTTCTTTGGCCAAATACATCGCCGATTTGTCTCATCACTTTGCTAATAAGAAACGTCTTTTCACCGTGGTTCCAATTCCCCCTGGTAATGTGTATGCCATTGATGATACTCTATCAGCTGAGGGTGCAGTTGAAGAATAA

Protein sequence

MASSHPKTEKRVFDSEEDLAVSLAKYIADLSHHFANKKRLFTVVPIPPGNVYAIDDTLSAEGAVEE

Homology

[Close]

BLAST of Cla97C01G000190 vs. NCBI nr
Match: XP_008437648.1 (PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Cucumis melo] >XP_016898797.1 PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-11
Identity = 53/117 (45.30%), Postives = 53/117 (45.30%), Query Frame = 0


Query: 7   KTEKRVFDSEEDLAVSLAKYIADLSHHFANKKRLFTV----------------------- 66
           KTEKRVFDSEEDLAVSLAKYI  LS  FA KK LFTV                       
Sbjct: 3   KTEKRVFDSEEDLAVSLAKYIDHLSDQFAKKKGLFTVVLSGGSLIECLRKLVEPPYVDSI 62

[Close]

BLAST of Cla97C01G000190 vs. NCBI nr
Match: XP_022922139.1 (probable 6-phosphogluconolactonase 4, chloroplastic [Cucurbita moschata])

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-10
Identity = 50/115 (43.48%), Postives = 52/115 (45.22%), Query Frame = 0


Query: 9   EKRVFDSEEDLAVSLAKYIADLSHHFANKKRLFTV------------------------- 67
           EKR+FDSEEDLAVSLAKYIADLS HFA  + LFTV                         
Sbjct: 4   EKRIFDSEEDLAVSLAKYIADLSAHFAKNRGLFTVVLSGGCLIECLRKLVEPPYVDSIDW 63

[Close]

BLAST of Cla97C01G000190 vs. NCBI nr
Match: XP_022974336.1 (probable 6-phosphogluconolactonase 4, chloroplastic [Cucurbita maxima])

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-10
Identity = 50/115 (43.48%), Postives = 52/115 (45.22%), Query Frame = 0


Query: 9   EKRVFDSEEDLAVSLAKYIADLSHHFANKKRLFTV------------------------- 67
           EK+VFDSEEDLAVSLAKYIADLS HFA  + LFTV                         
Sbjct: 4   EKKVFDSEEDLAVSLAKYIADLSAHFAKNRGLFTVVLSGGCLIECLRKLVEPPYVDSIDW 63

[Close]

BLAST of Cla97C01G000190 vs. NCBI nr
Match: XP_023549647.1 (probable 6-phosphogluconolactonase 4, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-10
Identity = 49/115 (42.61%), Postives = 51/115 (44.35%), Query Frame = 0


Query: 9   EKRVFDSEEDLAVSLAKYIADLSHHFANKKRLFTV------------------------- 67
           EKR+FDSEEDLAVSLAKYIADLS HFA  + LFTV                         
Sbjct: 4   EKRIFDSEEDLAVSLAKYIADLSAHFAKSRGLFTVVLSGGCLIECLRKLVEPPYVDSIDW 63

[Close]

BLAST of Cla97C01G000190 vs. NCBI nr
Match: XP_004145953.1 (PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Cucumis sativus] >KGN49834.1 hypothetical protein Csa_5G139130 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 6.5e-10
Identity = 51/117 (43.59%), Postives = 52/117 (44.44%), Query Frame = 0


Query: 7   KTEKRVFDSEEDLAVSLAKYIADLSHHFANKKRLFTV----------------------- 66
           +TEKRVFDSEEDLAVSLAKYIA LS  FA  K LFTV                       
Sbjct: 3   QTEKRVFDSEEDLAVSLAKYIAHLSDQFAKNKGLFTVVLSGGSLIECLRKLVEPPYVDSI 62

[Close]

BLAST of Cla97C01G000190 vs. TrEMBL
Match: tr|A0A1S4DS20|A0A1S4DS20_CUCME (probable 6-phosphogluconolactonase 4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103482992 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 53/117 (45.30%), Postives = 53/117 (45.30%), Query Frame = 0


Query: 7   KTEKRVFDSEEDLAVSLAKYIADLSHHFANKKRLFTV----------------------- 66
           KTEKRVFDSEEDLAVSLAKYI  LS  FA KK LFTV                       
Sbjct: 3   KTEKRVFDSEEDLAVSLAKYIDHLSDQFAKKKGLFTVVLSGGSLIECLRKLVEPPYVDSI 62

[Close]

BLAST of Cla97C01G000190 vs. TrEMBL
Match: tr|A0A0A0KLT7|A0A0A0KLT7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139130 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.3e-10
Identity = 51/117 (43.59%), Postives = 52/117 (44.44%), Query Frame = 0


Query: 7   KTEKRVFDSEEDLAVSLAKYIADLSHHFANKKRLFTV----------------------- 66
           +TEKRVFDSEEDLAVSLAKYIA LS  FA  K LFTV                       
Sbjct: 3   QTEKRVFDSEEDLAVSLAKYIAHLSDQFAKNKGLFTVVLSGGSLIECLRKLVEPPYVDSI 62

[Close]

BLAST of Cla97C01G000190 vs. TrEMBL
Match: tr|A0A0A0KJD3|A0A0A0KJD3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139140 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 44/116 (37.93%), Postives = 51/116 (43.97%), Query Frame = 0


Query: 8   TEKRVFDSEEDLAVSLAKYIADLSHHFANKKRLFTV------------------------ 67
           ++KRVFDS +DLAVSLAKY ADLS HFANK+  FTV                        
Sbjct: 73  SDKRVFDSGDDLAVSLAKYTADLSEHFANKRGAFTVVLSGGSLIKCLRKLLEPPYVDSIE 132

[Close]

BLAST of Cla97C01G000190 vs. TrEMBL
Match: tr|A0A1S3AV54|A0A1S3AV54_CUCME (probable 6-phosphogluconolactonase 4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103482989 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 44/116 (37.93%), Postives = 51/116 (43.97%), Query Frame = 0


Query: 8   TEKRVFDSEEDLAVSLAKYIADLSHHFANKKRLFTV------------------------ 67
           ++KRVFDS +DLAVSLAKY ADLS HFANK+  FTV                        
Sbjct: 73  SDKRVFDSGDDLAVSLAKYTADLSDHFANKRGAFTVVLSGGSLIKCLRKLVEPPYVDSID 132

[Close]

BLAST of Cla97C01G000190 vs. TrEMBL
Match: tr|A0A2R6Q9B7|A0A2R6Q9B7_ACTCH (6-phosphogluconolactonase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc20340 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 45/123 (36.59%), Postives = 52/123 (42.28%), Query Frame = 0


Query: 1   MASSHPKTEKRVFDSEEDLAVSLAKYIADLSHHFANKKRLFTV----------------- 60
           MA    K + +VFDSEEDLAVSLAKYIADLS  F  ++  FTV                 
Sbjct: 91  MAVEKGKGKVQVFDSEEDLAVSLAKYIADLSDKFVKERGAFTVVLSGGSLVKSLRKLVES 150

Query: 61  ----------------------------------------VPIPPGNVYAIDDTLSAEGA 67
                                                   VPIPPGNVYAI+D LSAEGA
Sbjct: 151 PYMDSVEWSKWHVFWVDERVVPKDHEDSNYKLAYDCFLSKVPIPPGNVYAINDALSAEGA 210

[Close]

BLAST of Cla97C01G000190 vs. Swiss-Prot
Match: sp|A2Z3C4|6PGL4_ORYSI (Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_031067 PE=3 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 9.5e-05
Identity = 36/111 (32.43%), Postives = 43/111 (38.74%), Query Frame = 0


Query: 13  FDSEEDLAVSLAKYIADLSHHFANKKRLFTV----------------------------- 67
           FD+EEDLAVSLAKY A+LS   A ++  FTV                             
Sbjct: 78  FDAEEDLAVSLAKYTAELSAKLAAERGAFTVVLSGGSLIKNIRKLAEPPYLDSVDWSKWH 137

[Close]

BLAST of Cla97C01G000190 vs. Swiss-Prot
Match: sp|Q69NG5|6PGL4_ORYSJ (Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0529100 PE=2 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 9.5e-05
Identity = 36/111 (32.43%), Postives = 43/111 (38.74%), Query Frame = 0


Query: 13  FDSEEDLAVSLAKYIADLSHHFANKKRLFTV----------------------------- 67
           FD+EEDLAVSLAKY A+LS   A ++  FTV                             
Sbjct: 78  FDAEEDLAVSLAKYTAELSAKLAAERGAFTVVLSGGSLIKNIRKLAEPPYLDSVDWSKWH 137

[Close]

BLAST of Cla97C01G000190 vs. Swiss-Prot
Match: sp|Q84WW2|6PGL5_ARATH (Probable 6-phosphogluconolactonase 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2024 PE=2 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 6.2e-04
Identity = 32/117 (27.35%), Postives = 43/117 (36.75%), Query Frame = 0


Query: 7   KTEKRVFDSEEDLAVSLAKYIADLSHHFANKKRLFTV----------------------- 66
           K    ++D EE+L + LAK+ ADLS  F  ++  FTV                       
Sbjct: 80  KKRVEIYDLEENLVIDLAKFTADLSDKFCKERGAFTVVVSGGSLIKSLRKLVESPYVDSI 139

[Close]

BLAST of Cla97C01G000190 vs. TAIR10
Match: AT5G24400.1 (NagB/RpiA/CoA transferase-like superfamily protein)

HSP 1 Score: 44.3 bits (103), Expect = 3.4e-05
Identity = 32/117 (27.35%), Postives = 43/117 (36.75%), Query Frame = 0


Query: 7   KTEKRVFDSEEDLAVSLAKYIADLSHHFANKKRLFTV----------------------- 66
           K    ++D EE+L + LAK+ ADLS  F  ++  FTV                       
Sbjct: 80  KKRVEIYDLEENLVIDLAKFTADLSDKFCKERGAFTVVVSGGSLIKSLRKLVESPYVDSI 139

[Close]

BLAST of Cla97C01G000190 vs. TAIR10
Match: AT3G49360.1 (6-phosphogluconolactonase 2)

HSP 1 Score: 40.0 bits (92), Expect = 6.5e-04
Identity = 18/36 (50.00%), Postives = 26/36 (72.22%), Query Frame = 0


Query: 9  EKRVFDSEEDLAVSLAKYIADLSHHFANKKRLFTVV 45
          ++RVF +  ++AV LAKY ADLS  F  ++ +FTVV
Sbjct: 5  KRRVFKTNNEMAVELAKYTADLSSKFCKERGVFTVV 40

The following BLAST results are available for this feature:

BLAST of Cla97C01G000190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437648.1	2.0e-11	45.30	PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Cucumis melo] >X...	[more]
XP_022922139.1	1.0e-10	43.48	probable 6-phosphogluconolactonase 4, chloroplastic [Cucurbita moschata]	[more]
XP_022974336.1	1.7e-10	43.48	probable 6-phosphogluconolactonase 4, chloroplastic [Cucurbita maxima]	[more]
XP_023549647.1	2.9e-10	42.61	probable 6-phosphogluconolactonase 4, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_004145953.1	6.5e-10	43.59	PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Cucumis sativus]...	[more]

BLAST of Cla97C01G000190 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DS20\|A0A1S4DS20_CUCME	1.3e-11	45.30	probable 6-phosphogluconolactonase 4, chloroplastic OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A0A0KLT7\|A0A0A0KLT7_CUCSA	4.3e-10	43.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139130 PE=4 SV=1	[more]
tr\|A0A0A0KJD3\|A0A0A0KJD3_CUCSA	1.2e-07	37.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139140 PE=4 SV=1	[more]
tr\|A0A1S3AV54\|A0A1S3AV54_CUCME	1.5e-07	37.93	probable 6-phosphogluconolactonase 4, chloroplastic OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A2R6Q9B7\|A0A2R6Q9B7_ACTCH	3.4e-07	36.59	6-phosphogluconolactonase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CE...	[more]

BLAST of Cla97C01G000190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A2Z3C4\|6PGL4_ORYSI	9.5e-05	32.43	Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. indic...	[more]
sp\|Q69NG5\|6PGL4_ORYSJ	9.5e-05	32.43	Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. japon...	[more]
sp\|Q84WW2\|6PGL5_ARATH	6.2e-04	27.35	Probable 6-phosphogluconolactonase 5, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]

BLAST of Cla97C01G000190 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24400.1	3.4e-05	27.35	NagB/RpiA/CoA transferase-like superfamily protein	[more]
AT3G49360.1	6.5e-04	50.00	6-phosphogluconolactonase 2	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR039104	PGLS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0008150	biological_process
biological_process	GO:0050896	response to stimulus
biological_process	GO:0098542	defense response to other organism
biological_process	GO:0009051	pentose-phosphate shunt, oxidative branch
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009536	plastid
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0017057	6-phosphogluconolactonase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G000190.1	Cla97C01G000190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11054:SF13	SUBFAMILY NOT NAMED	coord: 40..65
None	No IPR available	PANTHER	PTHR11054:SF13	SUBFAMILY NOT NAMED	coord: 2..44
IPR039104	6-Phosphogluconolactonase	PANTHER	PTHR11054	6-PHOSPHOGLUCONOLACTONASE	coord: 40..65
IPR039104	6-Phosphogluconolactonase	PANTHER	PTHR11054	6-PHOSPHOGLUCONOLACTONASE	coord: 2..44

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G000190	Cla004870	Watermelon (97103) v1	wmwmbB235
Cla97C01G000190	ClCG01G000180	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G000190	Lsi09G000010	Bottle gourd (USVL1VR-Ls)	lsiwmbB007
Cla97C01G000190	Bhi12G000590	Wax gourd	wgowmbB062

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G000190	Silver-seed gourd	carwmbB0529
Cla97C01G000190	Silver-seed gourd	carwmbB0602
Cla97C01G000190	Cucumber (Gy14) v2	cgybwmbB319
Cla97C01G000190	Cucumber (Gy14) v1	cgywmbB379
Cla97C01G000190	Cucurbita maxima (Rimu)	cmawmbB247
Cla97C01G000190	Cucurbita maxima (Rimu)	cmawmbB284
Cla97C01G000190	Cucurbita maxima (Rimu)	cmawmbB324
Cla97C01G000190	Cucurbita maxima (Rimu)	cmawmbB400
Cla97C01G000190	Cucurbita maxima (Rimu)	cmawmbB604
Cla97C01G000190	Cucurbita moschata (Rifu)	cmowmbB266
Cla97C01G000190	Cucurbita moschata (Rifu)	cmowmbB307
Cla97C01G000190	Cucurbita moschata (Rifu)	cmowmbB385
Cla97C01G000190	Cucurbita moschata (Rifu)	cmowmbB580
Cla97C01G000190	Wild cucumber (PI 183967)	cpiwmbB349
Cla97C01G000190	Cucumber (Chinese Long) v3	cucwmbB351
Cla97C01G000190	Cucumber (Chinese Long) v2	cuwmbB336
Cla97C01G000190	Melon (DHL92) v3.6.1	medwmbB006
Cla97C01G000190	Melon (DHL92) v3.5.1	mewmbB008