Cla97C01G000160 (gene) Watermelon (97103) v2

NameCla97C01G000160
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr01 : 102525 .. 102734 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTGAAAATGAGGGAAATGAATGTGGAAATGGAAATTCAGATGCATGAGGTGGTGATGATGCTTATCGCCGCCGCCGCCGAACCCCATCGGAAGAATGTGAAGGTAGGGTTAAAGAGAAAAGGGCCAAGGGTGGGAAGAGGAGATTGCGAGGGTGAAGAGAGTGAAAGAGGAATGCGTGAAGGAGGAAGGGATATTACTCATTGA

mRNA sequence

ATGGTGGTGAAAATGAGGGAAATGAATGTGGAAATGGAAATTCAGATGCATGAGGTGGTGATGATGCTTATCGCCGCCGCCGCCGAACCCCATCGGAAGAATGTGAAGGTAGGGTTAAAGAGAAAAGGGCCAAGGGTGGGAAGAGGAGATTGCGAGGGTGAAGAGAGTGAAAGAGGAATGCGTGAAGGAGGAAGGGATATTACTCATTGA

Coding sequence (CDS)

ATGGTGGTGAAAATGAGGGAAATGAATGTGGAAATGGAAATTCAGATGCATGAGGTGGTGATGATGCTTATCGCCGCCGCCGCCGAACCCCATCGGAAGAATGTGAAGGTAGGGTTAAAGAGAAAAGGGCCAAGGGTGGGAAGAGGAGATTGCGAGGGTGAAGAGAGTGAAAGAGGAATGCGTGAAGGAGGAAGGGATATTACTCATTGA

Protein sequence

MVVKMREMNVEMEIQMHEVVMMLIAAAAEPHRKNVKVGLKRKGPRVGRGDCEGEESERGMREGGRDITH
BLAST of Cla97C01G000160 vs. NCBI nr
Match: KGN49831.1 (hypothetical protein Csa_5G139105 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 7.5e-09
Identity = 45/69 (65.22%), Postives = 46/69 (66.67%), Query Frame = 0

Query: 1  MVVKMREMNVEMEIQMHEVVMMLIAAAAEPHRKNVKVGLKRKGPRVGRGDCEGEESERGM 60
          MVVKMREMNVE               A E HRK VKV LKRKGPR+ RGD EGEESERGM
Sbjct: 32 MVVKMREMNVE-XXXXXXXXXXXXXXATETHRKKVKV-LKRKGPRMVRGDSEGEESERGM 91

Query: 61 REGGRDITH 70
           EGGRDI H
Sbjct: 92 SEGGRDIGH 98

BLAST of Cla97C01G000160 vs. TrEMBL
Match: tr|A0A0A0KQ31|A0A0A0KQ31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139105 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.9e-09
Identity = 45/69 (65.22%), Postives = 46/69 (66.67%), Query Frame = 0

Query: 1  MVVKMREMNVEMEIQMHEVVMMLIAAAAEPHRKNVKVGLKRKGPRVGRGDCEGEESERGM 60
          MVVKMREMNVE               A E HRK VKV LKRKGPR+ RGD EGEESERGM
Sbjct: 32 MVVKMREMNVE-XXXXXXXXXXXXXXATETHRKKVKV-LKRKGPRMVRGDSEGEESERGM 91

Query: 61 REGGRDITH 70
           EGGRDI H
Sbjct: 92 SEGGRDIGH 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49831.17.5e-0965.22hypothetical protein Csa_5G139105 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
tr|A0A0A0KQ31|A0A0A0KQ31_CUCSA4.9e-0965.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139105 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G000160.1Cla97C01G000160.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..69

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G000160CSPI05G02880Wild cucumber (PI 183967)cpiwmbB349
Cla97C01G000160CsaV3_5G000190Cucumber (Chinese Long) v3cucwmbB351
The following gene(s) are paralogous to this gene:

None