Cla97C01G000080 (gene) Watermelon (97103) v2

NameCla97C01G000080
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Description60S acidic ribosomal protein family
LocationCla97Chr01 : 53475 .. 53990 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTACCAGTGAACTTGCTTGCACCTACGCCGCCTTGATTCTTCATGGCGACGCCATCTCCGTCGCTGTACCTATCAATTTTCCTTTTTACCTCCTTCCATTTCTAACAGCTCTCTTCTTCTTTCTTTCCATATTTTAATTTAGGCCGAGAAGATTTCCAAGTCGGTGAACGCTGCCAGCCTTACCGTCGAATCCTACTGGCCTTCTCTCTTTTCTCTCTCCATCTCATCTTCTGCCGGTAATGCCGCTCCTGCGCCCGTCGACAAGCAGGTACGCGGTTTTTTCGTACTTGCCTAAATAACAAATAATTCAAAATTAGGATTATATAAGTTTATACATGATTTTAGATCGCTGAAAGCAATTGAGCCTATAGCTCCTTCTTACTGGAGCATATATATTATTGATTTTGATTTACGTATATTCCTGGTTATATATGGTTGTATTGTACCTGTATCATATGCAGGAAGAGGTGATGGAAGAGAGCGAGGATGAGATGGTCTTGGGCTTTGTTTGA

mRNA sequence

ATGTCTACCAGTGAACTTGCTTGCACCTACGCCGCCTTGATTCTTCATGGCGACGCCATCTCCGTCGCTGCCGAGAAGATTTCCAAGTCGGTGAACGCTGCCAGCCTTACCGTCGAATCCTACTGGCCTTCTCTCTTTTCTCTCTCCATCTCATCTTCTGCCGGTAATGCCGCTCCTGCGCCCGTCGACAAGCAGGAAGAGGTGATGGAAGAGAGCGAGGATGAGATGGTCTTGGGCTTTGTTTGA

Coding sequence (CDS)

ATGTCTACCAGTGAACTTGCTTGCACCTACGCCGCCTTGATTCTTCATGGCGACGCCATCTCCGTCGCTGCCGAGAAGATTTCCAAGTCGGTGAACGCTGCCAGCCTTACCGTCGAATCCTACTGGCCTTCTCTCTTTTCTCTCTCCATCTCATCTTCTGCCGGTAATGCCGCTCCTGCGCCCGTCGACAAGCAGGAAGAGGTGATGGAAGAGAGCGAGGATGAGATGGTCTTGGGCTTTGTTTGA

Protein sequence

MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFSLSISSSAGNAAPAPVDKQEEVMEESEDEMVLGFV
BLAST of Cla97C01G000080 vs. NCBI nr
Match: XP_022138164.1 (60S acidic ribosomal protein P1-like isoform X2 [Momordica charantia])

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 1  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS 48
          MSTSELACTYAALILH DAISV AEKI+  V AA LTVESYWPSLF+
Sbjct: 1  MSTSELACTYAALILHDDAISVTAEKIATLVKAAGLTVESYWPSLFA 47

BLAST of Cla97C01G000080 vs. NCBI nr
Match: NP_197839.1 (60S acidic ribosomal protein family [Arabidopsis thaliana] >BAB11203.1 60s acidic ribosomal protein P1 [Arabidopsis thaliana] >AAY78832.1 putative 60S acidic ribosomal protein P1 [Arabidopsis thaliana] >AED93318.1 60S acidic ribosomal protein family [Arabidopsis thaliana] >OAO90506.1 hypothetical protein AXX17_AT5G24350 [Arabidopsis thaliana])

HSP 1 Score: 72.8 bits (177), Expect = 6.1e-10
Identity = 50/108 (46.30%), Postives = 62/108 (57.41%), Query Frame = 0

Query: 1   MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS----------LSI 60
           MSTSELACTYAALILH D I + AE ISK V  A++ VESYWPSLF+          L +
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60

Query: 61  SSSAG---------NAAPA-------PVDKQEE---VMEESEDEMVLG 80
           +  AG          AAP        P +K+ E   + EESED+M++G
Sbjct: 61  NVGAGGCGVARPVTTAAPTASQSVSIPEEKKNEMEVIKEESEDDMIIG 108

BLAST of Cla97C01G000080 vs. NCBI nr
Match: XP_006394706.1 (60S acidic ribosomal protein P1 [Eutrema salsugineum] >ESQ31992.1 hypothetical protein EUTSA_v10005602mg [Eutrema salsugineum])

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-09
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 2  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LS 60
          +TSELACTYAALILH D I + AEKISK V AA++ VESYWPSLF+            ++
Sbjct: 4  TTSELACTYAALILHDDGIEITAEKISKLVKAANVNVESYWPSLFAKLCQKKNIDDLIMN 63

BLAST of Cla97C01G000080 vs. NCBI nr
Match: XP_017608770.1 (PREDICTED: 60S acidic ribosomal protein P1-like [Gossypium arboreum] >KHG14093.1 60S acidic ribosomal P1 [Gossypium arboreum])

HSP 1 Score: 69.3 bits (168), Expect = 6.7e-09
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 1  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS 48
          M+T ELACTYAALILH D IS+ AEKI+  V AA+L+VESYWPSLF+
Sbjct: 1  MATGELACTYAALILHDDGISITAEKIATLVKAANLSVESYWPSLFA 47

BLAST of Cla97C01G000080 vs. NCBI nr
Match: XP_012486605.1 (PREDICTED: 60S acidic ribosomal protein P1-like [Gossypium raimondii] >KJB37418.1 hypothetical protein B456_006G203500 [Gossypium raimondii] >KJB37419.1 hypothetical protein B456_006G203500 [Gossypium raimondii] >KJB37420.1 hypothetical protein B456_006G203500 [Gossypium raimondii])

HSP 1 Score: 69.3 bits (168), Expect = 6.7e-09
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 1  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS 48
          M+T ELACTYAALILH D IS+ AEKI+  V AA+L+VESYWPSLF+
Sbjct: 1  MATGELACTYAALILHDDGISITAEKIATLVKAANLSVESYWPSLFA 47

BLAST of Cla97C01G000080 vs. TrEMBL
Match: tr|Q9FLV1|Q9FLV1_ARATH (60S acidic ribosomal protein family OS=Arabidopsis thaliana OX=3702 GN=At5g24510 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.0e-10
Identity = 50/108 (46.30%), Postives = 62/108 (57.41%), Query Frame = 0

Query: 1   MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS----------LSI 60
           MSTSELACTYAALILH D I + AE ISK V  A++ VESYWPSLF+          L +
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60

Query: 61  SSSAG---------NAAPA-------PVDKQEE---VMEESEDEMVLG 80
           +  AG          AAP        P +K+ E   + EESED+M++G
Sbjct: 61  NVGAGGCGVARPVTTAAPTASQSVSIPEEKKNEMEVIKEESEDDMIIG 108

BLAST of Cla97C01G000080 vs. TrEMBL
Match: tr|A0A178U9K9|A0A178U9K9_ARATH (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At5g24350 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.0e-10
Identity = 50/108 (46.30%), Postives = 62/108 (57.41%), Query Frame = 0

Query: 1   MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS----------LSI 60
           MSTSELACTYAALILH D I + AE ISK V  A++ VESYWPSLF+          L +
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60

Query: 61  SSSAG---------NAAPA-------PVDKQEE---VMEESEDEMVLG 80
           +  AG          AAP        P +K+ E   + EESED+M++G
Sbjct: 61  NVGAGGCGVARPVTTAAPTASQSVSIPEEKKNEMEVIKEESEDDMIIG 108

BLAST of Cla97C01G000080 vs. TrEMBL
Match: tr|V4KQ04|V4KQ04_EUTSA (Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005602mg PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-09
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 2  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LS 60
          +TSELACTYAALILH D I + AEKISK V AA++ VESYWPSLF+            ++
Sbjct: 4  TTSELACTYAALILHDDGIEITAEKISKLVKAANVNVESYWPSLFAKLCQKKNIDDLIMN 63

BLAST of Cla97C01G000080 vs. TrEMBL
Match: tr|A0A1U8HXU8|A0A1U8HXU8_GOSHI (60S acidic ribosomal protein P1-like OS=Gossypium hirsutum OX=3635 GN=LOC107890794 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.4e-09
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 1  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS 48
          M+T ELACTYAALILH D IS+ AEKI+  V AA+L+VESYWPSLF+
Sbjct: 1  MATGELACTYAALILHDDGISITAEKIATLVKAANLSVESYWPSLFA 47

BLAST of Cla97C01G000080 vs. TrEMBL
Match: tr|A0A0D2QDP7|A0A0D2QDP7_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G203500 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.4e-09
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 1  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS 48
          M+T ELACTYAALILH D IS+ AEKI+  V AA+L+VESYWPSLF+
Sbjct: 1  MATGELACTYAALILHDDGISITAEKIATLVKAANLSVESYWPSLFA 47

BLAST of Cla97C01G000080 vs. Swiss-Prot
Match: sp|P29763|RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-08
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 1  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS 48
          MSTSELACTYAALILH D + + A+ I+    AA + VE YWP+LF+
Sbjct: 1  MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFA 47

BLAST of Cla97C01G000080 vs. Swiss-Prot
Match: sp|P27464|RLA1_POLPE (60S acidic ribosomal protein P1 OS=Polyorchis penicillatus OX=6091 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-08
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 0

Query: 2  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFSL 49
          STSELAC Y+ALILH DAI+  AEK++K ++AA++ VE YWP LF+L
Sbjct: 5  STSELACVYSALILHDDAIT--AEKMNKIISAANVNVEPYWPGLFAL 49

BLAST of Cla97C01G000080 vs. Swiss-Prot
Match: sp|P52855|RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.1e-08
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 1  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS 48
          M++ ELAC YAALIL  D I++ AEKI+  V AA++ VESYWP+LF+
Sbjct: 1  MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFA 47

BLAST of Cla97C01G000080 vs. Swiss-Prot
Match: sp|P47955|RLA1_MOUSE (60S acidic ribosomal protein P1 OS=Mus musculus OX=10090 GN=Rplp1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.6e-07
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 0

Query: 2  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFSLSISS--------S 61
          S SELAC Y+ALILH D ++V  +KI+  + AA ++VE +WP LF+ ++++        +
Sbjct: 3  SVSELACIYSALILHDDEVTVTEDKINALIKAAGVSVEPFWPGLFAKALANVNIGSLICN 62

BLAST of Cla97C01G000080 vs. Swiss-Prot
Match: sp|Q56K14|RLA1_BOVIN (60S acidic ribosomal protein P1 OS=Bos taurus OX=9913 GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.3e-07
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 0

Query: 2  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFSLSISS--------S 61
          S SELAC Y+ALILH D ++V  +KI+  + AA + VE +WP LF+ ++++        +
Sbjct: 3  SVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICN 62

BLAST of Cla97C01G000080 vs. TAIR10
Match: AT5G24510.1 (60S acidic ribosomal protein family)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-13
Identity = 50/108 (46.30%), Postives = 62/108 (57.41%), Query Frame = 0

Query: 1   MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS----------LSI 60
           MSTSELACTYAALILH D I + AE ISK V  A++ VESYWPSLF+          L +
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60

Query: 61  SSSAG---------NAAPA-------PVDKQEE---VMEESEDEMVLG 80
           +  AG          AAP        P +K+ E   + EESED+M++G
Sbjct: 61  NVGAGGCGVARPVTTAAPTASQSVSIPEEKKNEMEVIKEESEDDMIIG 108

BLAST of Cla97C01G000080 vs. TAIR10
Match: AT5G47700.1 (60S acidic ribosomal protein family)

HSP 1 Score: 52.8 bits (125), Expect = 1.2e-07
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 0

Query: 1  MST-SELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS 48
          MST  ELAC+YA +IL  + I++ A+KI+  V AA +T+ESYWP LF+
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFA 48

BLAST of Cla97C01G000080 vs. TAIR10
Match: AT1G01100.1 (60S acidic ribosomal protein family)

HSP 1 Score: 51.2 bits (121), Expect = 3.4e-07
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 0

Query: 1  MST-SELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS 48
          MST  ELAC+YA +IL  + I++ A+KI+  V AA +++ESYWP LF+
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFA 48

BLAST of Cla97C01G000080 vs. TAIR10
Match: AT4G00810.1 (60S acidic ribosomal protein family)

HSP 1 Score: 49.3 bits (116), Expect = 1.3e-06
Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 1  MST-SELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS 48
          MST  ELAC+YA +IL  + I++ ++KI+  V AA + +ESYWP LF+
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFA 48

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022138164.11.2e-1082.9860S acidic ribosomal protein P1-like isoform X2 [Momordica charantia][more]
NP_197839.16.1e-1046.3060S acidic ribosomal protein family [Arabidopsis thaliana] >BAB11203.1 60s acidi... [more]
XP_006394706.12.3e-0955.7160S acidic ribosomal protein P1 [Eutrema salsugineum] >ESQ31992.1 hypothetical p... [more]
XP_017608770.16.7e-0972.34PREDICTED: 60S acidic ribosomal protein P1-like [Gossypium arboreum] >KHG14093.1... [more]
XP_012486605.16.7e-0972.34PREDICTED: 60S acidic ribosomal protein P1-like [Gossypium raimondii] >KJB37418.... [more]
Match NameE-valueIdentityDescription
tr|Q9FLV1|Q9FLV1_ARATH4.0e-1046.3060S acidic ribosomal protein family OS=Arabidopsis thaliana OX=3702 GN=At5g24510... [more]
tr|A0A178U9K9|A0A178U9K9_ARATH4.0e-1046.30Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At5g24350 PE=3 ... [more]
tr|V4KQ04|V4KQ04_EUTSA1.5e-0955.71Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005602mg PE=... [more]
tr|A0A1U8HXU8|A0A1U8HXU8_GOSHI4.4e-0972.3460S acidic ribosomal protein P1-like OS=Gossypium hirsutum OX=3635 GN=LOC1078907... [more]
tr|A0A0D2QDP7|A0A0D2QDP7_GOSRA4.4e-0972.34Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G203500 PE=3 ... [more]
Match NameE-valueIdentityDescription
sp|P29763|RLA1_CHLRE1.7e-0859.5760S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1[more]
sp|P27464|RLA1_POLPE2.3e-0863.8360S acidic ribosomal protein P1 OS=Polyorchis penicillatus OX=6091 PE=3 SV=1[more]
sp|P52855|RLA1_MAIZE5.1e-0859.5760S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1[more]
sp|P47955|RLA1_MOUSE5.6e-0741.1860S acidic ribosomal protein P1 OS=Mus musculus OX=10090 GN=Rplp1 PE=1 SV=1[more]
sp|Q56K14|RLA1_BOVIN7.3e-0741.1860S acidic ribosomal protein P1 OS=Bos taurus OX=9913 GN=RPLP1 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G24510.11.1e-1346.3060S acidic ribosomal protein family[more]
AT5G47700.11.2e-0754.1760S acidic ribosomal protein family[more]
AT1G01100.13.4e-0752.0860S acidic ribosomal protein family[more]
AT4G00810.11.3e-0650.0060S acidic ribosomal protein family[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR038716P1/P2_N_sf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032147 activation of protein kinase activity
biological_process GO:0002181 cytoplasmic translation
biological_process GO:0045860 positive regulation of protein kinase activity
biological_process GO:0006414 translational elongation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0030295 protein kinase activator activity
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G000080.1Cla97C01G000080.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038716Ribosomal protein P1/P2, N-terminal domainGENE3DG3DSA:1.10.10.1410coord: 1..53
e-value: 2.6E-18
score: 67.5
NoneNo IPR availablePANTHERPTHR21141:SF5960S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATEDcoord: 1..47
NoneNo IPR availablePANTHERPTHR2114160S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBERcoord: 1..47

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G000080Cla000303Watermelon (97103) v1wmwmbB000
Cla97C01G000080ClCG01G000090Watermelon (Charleston Gray)wcgwmbB089
The following gene(s) are paralogous to this gene:

None