Cla022725 (gene) Watermelon (97103) v1

Overview
NameCla022725
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPectate lyase (AHRD V1 ***- Q6U7H9_MALDO); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen
LocationChr8 : 26023137 .. 26023856 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGTCACCATTGCTTTTAACCATTTTGGTGAGGGTCTTGTACAAAGAATGCCACGGTGAGTCCTAATTTTTTTTTTGAAATGAACTTTTTTAAGTTTTTGATTAAAAATTGCTTTTTTGAAATAATTGAAAAGTTGTCCTCTAAATTAGCTTGAAATGTGTGTGATGGACAGATGCCGTCATGGATATTTCCATGTGGTGAATAATGACTATACTCATTGGATAATGTACGCCATTGGTGGAAGTGCATCTCCTACTATCAATAGTCAAGGGAATAGATACCTTGCTCCCGATAACCGAGATAGAAAAGAGGTGAGAATTTCATTGCTAATAATCCAAGATTCAATTAGTAGAGAAAGTATTATGTTTGAATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAATTGACAATAGAACGGATTAAAAACCCATTTCAAACAGGCCGTACAAATTTAGAGTAATTTATCAACTTAAGTTGATGTTCCTTTCAGGTGACAAAAAGAGAGGATGCACCGCAAAGCAAATGGAAGAATTGGAATTGGAGATCCGATGGAGATTTAATGTTGAATGGAGCATTCTTCACAAGGTCCGGTGCTGGAGCATCGTCTAGCTATGCGAGAGCATCGAGTTTGAGTGCGAAATCGTCGTCTCTAGTTAGTTCGATGACGGCAAAAGCGGGGGTGCTTTCCTGCCGAAAAGGCTCCCGGTGTTAG

mRNA sequence

ATGCAAGTCACCATTGCTTTTAACCATTTTGGTGAGGGTCTTGTACAAAGAATGCCACGATGCCGTCATGGATATTTCCATGTGGTGAATAATGACTATACTCATTGGATAATGTACGCCATTGGTGGAAGTGCATCTCCTACTATCAATAGTCAAGGGAATAGATACCTTGCTCCCGATAACCGAGATAGAAAAGAGGTGACAAAAAGAGAGGATGCACCGCAAAGCAAATGGAAGAATTGGAATTGGAGATCCGATGGAGATTTAATGTTGAATGGAGCATTCTTCACAAGGTCCGGTGCTGGAGCATCGTCTAGCTATGCGAGAGCATCGAGTTTGAGTGCGAAATCGTCGTCTCTAGTTAGTTCGATGACGGCAAAAGCGGGGGTGCTTTCCTGCCGAAAAGGCTCCCGGTGTTAG

Coding sequence (CDS)

ATGCAAGTCACCATTGCTTTTAACCATTTTGGTGAGGGTCTTGTACAAAGAATGCCACGATGCCGTCATGGATATTTCCATGTGGTGAATAATGACTATACTCATTGGATAATGTACGCCATTGGTGGAAGTGCATCTCCTACTATCAATAGTCAAGGGAATAGATACCTTGCTCCCGATAACCGAGATAGAAAAGAGGTGACAAAAAGAGAGGATGCACCGCAAAGCAAATGGAAGAATTGGAATTGGAGATCCGATGGAGATTTAATGTTGAATGGAGCATTCTTCACAAGGTCCGGTGCTGGAGCATCGTCTAGCTATGCGAGAGCATCGAGTTTGAGTGCGAAATCGTCGTCTCTAGTTAGTTCGATGACGGCAAAAGCGGGGGTGCTTTCCTGCCGAAAAGGCTCCCGGTGTTAG

Protein sequence

MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPDNRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSLVSSMTAKAGVLSCRKGSRC
Homology
[Close]
BLAST of Cla022725 vs. Swiss-Prot
Match: PLY5_ARATH (Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2)

HSP 1 Score: 245.0 bits (624), Expect = 4.9e-64
Identity = 115/139 (82.73%), Postives = 124/139 (89.21%), Query Frame = 1 

Query: 1   MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPD 60
           MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW MYAIGGSA+PTINSQGNR+LAP+
Sbjct: 270 MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWQMYAIGGSAAPTINSQGNRFLAPN 329

Query: 61  NRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSL 120
           +   KEVTK EDAP+SKWK WNWRS+GDL LNGAFFT SG GASSSYA+ASSLSA+ SSL
Sbjct: 330 DHVFKEVTKYEDAPRSKWKKWNWRSEGDLFLNGAFFTPSGGGASSSYAKASSLSARPSSL 389

Query: 121 VSSMTAKAGVLSCRKGSRC 140
           V+S+T+ AG L CRKGSRC
Sbjct: 390 VASVTSNAGALFCRKGSRC 408

[Close]
BLAST of Cla022725 vs. Swiss-Prot
Match: PLY18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 240.7 bits (613), Expect = 9.3e-63
Identity = 112/139 (80.58%), Postives = 121/139 (87.05%), Query Frame = 1 

Query: 1   MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPD 60
           MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW MYAIGGSA+PTINSQGNR+LAP+
Sbjct: 270 MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPN 329

Query: 61  NRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSL 120
            R  KEVTK EDAP+S+WK WNWRS GDL+LNGAFFT SG  ASSSYA+ASSL AK SSL
Sbjct: 330 IRFSKEVTKHEDAPESEWKRWNWRSSGDLLLNGAFFTPSGGAASSSYAKASSLGAKPSSL 389

Query: 121 VSSMTAKAGVLSCRKGSRC 140
           V  +T+ +G L+CRKGSRC
Sbjct: 390 VGPLTSTSGALNCRKGSRC 408

[Close]
BLAST of Cla022725 vs. Swiss-Prot
Match: PLY18_SOLLC (Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.2e-62
Identity = 111/141 (78.72%), Postives = 127/141 (90.07%), Query Frame = 1 

Query: 1   MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPD 60
           MQVT+AFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW MYAIGGSA+PTINSQGNR+LAP+
Sbjct: 264 MQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFLAPN 323

Query: 61  NRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSS--YARASSLSAKSS 120
            + RKEVTK EDAP+S+W++WNWRS+GDLMLNGA+F ++GAGASSS  YARASSLSA+ S
Sbjct: 324 EKYRKEVTKHEDAPESQWRSWNWRSEGDLMLNGAYFRQTGAGASSSSTYARASSLSARPS 383

Query: 121 SLVSSMTAKAGVLSCRKGSRC 140
           SLV S+T  AG ++C+KGSRC
Sbjct: 384 SLVGSITTNAGPVNCKKGSRC 404

[Close]
BLAST of Cla022725 vs. Swiss-Prot
Match: PLY11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=3 SV=2)

HSP 1 Score: 238.0 bits (606), Expect = 6.0e-62
Identity = 110/139 (79.14%), Postives = 121/139 (87.05%), Query Frame = 1 

Query: 1   MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPD 60
           MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW MYAIGGSASPTI SQGNR+LAP+
Sbjct: 274 MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPN 333

Query: 61  NRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSL 120
            R  KEVTK EDAP+SKW++WNWRS+GD++LNGA+F  SGA A S+YARASSLSA+ SSL
Sbjct: 334 TRFNKEVTKHEDAPESKWRDWNWRSEGDMLLNGAYFRESGAEAPSTYARASSLSARPSSL 393

Query: 121 VSSMTAKAGVLSCRKGSRC 140
           V S+T  AG LSCR+G RC
Sbjct: 394 VGSITTTAGTLSCRRGRRC 412

[Close]
BLAST of Cla022725 vs. Swiss-Prot
Match: PLY8_ARATH (Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 6.0e-62
Identity = 111/139 (79.86%), Postives = 121/139 (87.05%), Query Frame = 1 

Query: 1   MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPD 60
           MQVTIA+NHFGEGL+QRMPRCRHGYFHVVNNDYTHW MYAIGGSA PTINSQGNR+LAP 
Sbjct: 278 MQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAGPTINSQGNRFLAPV 337

Query: 61  NRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSL 120
           N   KEVTKRE   +SKWK+WNWRS+GDL LNGAFFTRSGAGA ++YARASSLSAKSSSL
Sbjct: 338 NPFAKEVTKREYTGESKWKHWNWRSEGDLFLNGAFFTRSGAGAGANYARASSLSAKSSSL 397

Query: 121 VSSMTAKAGVLSCRKGSRC 140
           V +MT+ +G L+CR G RC
Sbjct: 398 VGTMTSYSGALNCRAGRRC 416

[Close]
BLAST of Cla022725 vs. TrEMBL
Match: A0A0A0LKL0_CUCSA (Pectate lyase OS=Cucumis sativus GN=Csa_2G350210 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 7.2e-70
Identity = 127/139 (91.37%), Postives = 134/139 (96.40%), Query Frame = 1 

Query: 1   MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPD 60
           MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAP+
Sbjct: 277 MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPN 336

Query: 61  NRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSL 120
           N++ KEVTKRED PQS+WKNWNWRSDGDLMLNGAFF RSGAGASSSYARASSLSAKSSSL
Sbjct: 337 NQNSKEVTKREDTPQSRWKNWNWRSDGDLMLNGAFFVRSGAGASSSYARASSLSAKSSSL 396

Query: 121 VSSMTAKAGVLSCRKGSRC 140
           ++S+TA AGVL CRKGSRC
Sbjct: 397 INSITAGAGVLKCRKGSRC 415

[Close]
BLAST of Cla022725 vs. TrEMBL
Match: C6TK59_SOYBN (Pectate lyase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 8.2e-66
Identity = 122/139 (87.77%), Postives = 131/139 (94.24%), Query Frame = 1 

Query: 1   MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPD 60
           MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW MYAIGGSA+PTINSQGNR+LAP+
Sbjct: 1   MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSAAPTINSQGNRFLAPN 60

Query: 61  NRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSL 120
           +   KEVTKRE++PQSKWKNWNWRS+GDLMLNGAFFT SGAGASSSYARASSL+AKSSSL
Sbjct: 61  DNTFKEVTKRENSPQSKWKNWNWRSNGDLMLNGAFFTASGAGASSSYARASSLAAKSSSL 120

Query: 121 VSSMTAKAGVLSCRKGSRC 140
           VSS+TA AG L CRKGSRC
Sbjct: 121 VSSITASAGSLRCRKGSRC 139

[Close]
BLAST of Cla022725 vs. TrEMBL
Match: I1MYL5_SOYBN (Pectate lyase OS=Glycine max GN=GLYMA_18G012200 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 8.2e-66
Identity = 122/139 (87.77%), Postives = 131/139 (94.24%), Query Frame = 1 

Query: 1   MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPD 60
           MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW MYAIGGSA+PTINSQGNR+LAP+
Sbjct: 267 MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSAAPTINSQGNRFLAPN 326

Query: 61  NRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSL 120
           +   KEVTKRE++PQSKWKNWNWRS+GDLMLNGAFFT SGAGASSSYARASSL+AKSSSL
Sbjct: 327 DNTFKEVTKRENSPQSKWKNWNWRSNGDLMLNGAFFTASGAGASSSYARASSLAAKSSSL 386

Query: 121 VSSMTAKAGVLSCRKGSRC 140
           VSS+TA AG L CRKGSRC
Sbjct: 387 VSSITASAGSLRCRKGSRC 405

[Close]
BLAST of Cla022725 vs. TrEMBL
Match: A0A0B2QR78_GLYSO (Pectate lyase OS=Glycine soja GN=glysoja_025289 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 8.2e-66
Identity = 122/139 (87.77%), Postives = 131/139 (94.24%), Query Frame = 1 

Query: 1   MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPD 60
           MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW MYAIGGSA+PTINSQGNR+LAP+
Sbjct: 267 MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSAAPTINSQGNRFLAPN 326

Query: 61  NRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSL 120
           +   KEVTKRE++PQSKWKNWNWRS+GDLMLNGAFFT SGAGASSSYARASSL+AKSSSL
Sbjct: 327 DNTFKEVTKRENSPQSKWKNWNWRSNGDLMLNGAFFTASGAGASSSYARASSLAAKSSSL 386

Query: 121 VSSMTAKAGVLSCRKGSRC 140
           VSS+TA AG L CRKGSRC
Sbjct: 387 VSSITASAGSLRCRKGSRC 405

[Close]
BLAST of Cla022725 vs. TrEMBL
Match: A0A0B2SCC5_GLYSO (Pectate lyase OS=Glycine soja GN=glysoja_014427 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.4e-65
Identity = 122/139 (87.77%), Postives = 130/139 (93.53%), Query Frame = 1 

Query: 1   MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPD 60
           MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW MYAIGGSA+PTINSQGNR+LAP+
Sbjct: 264 MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSAAPTINSQGNRFLAPN 323

Query: 61  NRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSL 120
           +   KEVTKRE++ QSKWKNWNWRS GDLMLNGAFFT SGAGASSSYARASSL+AKSSSL
Sbjct: 324 DNTFKEVTKRENSAQSKWKNWNWRSSGDLMLNGAFFTASGAGASSSYARASSLAAKSSSL 383

Query: 121 VSSMTAKAGVLSCRKGSRC 140
           VSS+TA AG LSCRKGSRC
Sbjct: 384 VSSITASAGSLSCRKGSRC 402

[Close]
BLAST of Cla022725 vs. NCBI nr
Match: gi|659087340|ref|XP_008444399.1| (PREDICTED: probable pectate lyase 5 [Cucumis melo])

HSP 1 Score: 276.6 bits (706), Expect = 2.4e-71
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 1 

Query: 1   MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPD 60
           MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAP+
Sbjct: 277 MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPN 336

Query: 61  NRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSL 120
           N+DRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFF RSGAGASS YARASSLSAKSSSL
Sbjct: 337 NQDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFVRSGAGASSRYARASSLSAKSSSL 396

Query: 121 VSSMTAKAGVLSCRKGSRC 140
           VSS+T+ AGVL CRKGSRC
Sbjct: 397 VSSITSGAGVLKCRKGSRC 415

[Close]
BLAST of Cla022725 vs. NCBI nr
Match: gi|449450608|ref|XP_004143054.1| (PREDICTED: probable pectate lyase 5 [Cucumis sativus])

HSP 1 Score: 271.2 bits (692), Expect = 1.0e-69
Identity = 127/139 (91.37%), Postives = 134/139 (96.40%), Query Frame = 1 

Query: 1   MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPD 60
           MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAP+
Sbjct: 277 MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPN 336

Query: 61  NRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSL 120
           N++ KEVTKRED PQS+WKNWNWRSDGDLMLNGAFF RSGAGASSSYARASSLSAKSSSL
Sbjct: 337 NQNSKEVTKREDTPQSRWKNWNWRSDGDLMLNGAFFVRSGAGASSSYARASSLSAKSSSL 396

Query: 121 VSSMTAKAGVLSCRKGSRC 140
           ++S+TA AGVL CRKGSRC
Sbjct: 397 INSITAGAGVLKCRKGSRC 415

[Close]
BLAST of Cla022725 vs. NCBI nr
Match: gi|356567472|ref|XP_003551943.1| (PREDICTED: probable pectate lyase 5 [Glycine max])

HSP 1 Score: 257.7 bits (657), Expect = 1.2e-65
Identity = 122/139 (87.77%), Postives = 131/139 (94.24%), Query Frame = 1 

Query: 1   MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPD 60
           MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW MYAIGGSA+PTINSQGNR+LAP+
Sbjct: 267 MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSAAPTINSQGNRFLAPN 326

Query: 61  NRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSL 120
           +   KEVTKRE++PQSKWKNWNWRS+GDLMLNGAFFT SGAGASSSYARASSL+AKSSSL
Sbjct: 327 DNTFKEVTKRENSPQSKWKNWNWRSNGDLMLNGAFFTASGAGASSSYARASSLAAKSSSL 386

Query: 121 VSSMTAKAGVLSCRKGSRC 140
           VSS+TA AG L CRKGSRC
Sbjct: 387 VSSITASAGSLRCRKGSRC 405

[Close]
BLAST of Cla022725 vs. NCBI nr
Match: gi|255645610|gb|ACU23299.1| (unknown [Glycine max])

HSP 1 Score: 257.7 bits (657), Expect = 1.2e-65
Identity = 122/139 (87.77%), Postives = 131/139 (94.24%), Query Frame = 1 

Query: 1   MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPD 60
           MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW MYAIGGSA+PTINSQGNR+LAP+
Sbjct: 1   MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSAAPTINSQGNRFLAPN 60

Query: 61  NRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSL 120
           +   KEVTKRE++PQSKWKNWNWRS+GDLMLNGAFFT SGAGASSSYARASSL+AKSSSL
Sbjct: 61  DNTFKEVTKRENSPQSKWKNWNWRSNGDLMLNGAFFTASGAGASSSYARASSLAAKSSSL 120

Query: 121 VSSMTAKAGVLSCRKGSRC 140
           VSS+TA AG L CRKGSRC
Sbjct: 121 VSSITASAGSLRCRKGSRC 139

[Close]
BLAST of Cla022725 vs. NCBI nr
Match: gi|571490403|ref|XP_006591479.1| (PREDICTED: probable pectate lyase 5 [Glycine max])

HSP 1 Score: 256.1 bits (653), Expect = 3.4e-65
Identity = 122/139 (87.77%), Postives = 130/139 (93.53%), Query Frame = 1 

Query: 1   MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPD 60
           MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW MYAIGGSA+PTINSQGNR+LAP+
Sbjct: 264 MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSAAPTINSQGNRFLAPN 323

Query: 61  NRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSL 120
           +   KEVTKRE++ QSKWKNWNWRS GDLMLNGAFFT SGAGASSSYARASSL+AKSSSL
Sbjct: 324 DNTFKEVTKRENSAQSKWKNWNWRSSGDLMLNGAFFTASGAGASSSYARASSLAAKSSSL 383

Query: 121 VSSMTAKAGVLSCRKGSRC 140
           VSS+TA AG LSCRKGSRC
Sbjct: 384 VSSITASAGSLSCRKGSRC 402

The following BLAST results are available for this feature:
BLAST of Cla022725 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PLY5_ARATH4.9e-6482.73Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2[more]
PLY18_ARATH9.3e-6380.58Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2[more]
PLY18_SOLLC1.2e-6278.72Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1[more]
PLY11_ARATH6.0e-6279.14Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=3 SV=2[more]
PLY8_ARATH6.0e-6279.86Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1[more]
BLAST of Cla022725 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKL0_CUCSA7.2e-7091.37Pectate lyase OS=Cucumis sativus GN=Csa_2G350210 PE=3 SV=1[more]
C6TK59_SOYBN8.2e-6687.77Pectate lyase OS=Glycine max PE=2 SV=1[more]
I1MYL5_SOYBN8.2e-6687.77Pectate lyase OS=Glycine max GN=GLYMA_18G012200 PE=3 SV=1[more]
A0A0B2QR78_GLYSO8.2e-6687.77Pectate lyase OS=Glycine soja GN=glysoja_025289 PE=3 SV=1[more]
A0A0B2SCC5_GLYSO2.4e-6587.77Pectate lyase OS=Glycine soja GN=glysoja_014427 PE=3 SV=1[more]
BLAST of Cla022725 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659087340|ref|XP_008444399.1|2.4e-7194.24PREDICTED: probable pectate lyase 5 [Cucumis melo][more]
gi|449450608|ref|XP_004143054.1|1.0e-6991.37PREDICTED: probable pectate lyase 5 [Cucumis sativus][more]
gi|356567472|ref|XP_003551943.1|1.2e-6587.77PREDICTED: probable pectate lyase 5 [Glycine max][more]
gi|255645610|gb|ACU23299.1|1.2e-6587.77unknown [Glycine max][more]
gi|571490403|ref|XP_006591479.1|3.4e-6587.77PREDICTED: probable pectate lyase 5 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002022Pec_lyase
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
IPR018082AmbAllergen
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045490 pectin catabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0046872 metal ion binding
molecular_function GO:0030570 pectate lyase activity
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU43219watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla022725Cla022725.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU43219WMU43219transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002022Pectate lyase/Amb allergenPFAMPF00544Pec_lyase_Ccoord: 2..54
score: 7.
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 1..139
score: 6.73
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 1..130
score: 2.7
IPR018082AmbAllergenPRINTSPR00807AMBALLERGENcoord: 17..36
score: 4.2E-39coord: 81..105
score: 4.2E-39coord: 110..133
score: 4.2E-39coord: 39..58
score: 4.2
NoneNo IPR availablePANTHERPTHR31683FAMILY NOT NAMEDcoord: 1..139
score: 8.2E
NoneNo IPR availablePANTHERPTHR31683:SF26PECTATE LYASE 5-RELATEDcoord: 1..139
score: 8.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla022725Cla97C08G161240Watermelon (97103) v2wmwmbB100
Cla022725ClCG08G017530Watermelon (Charleston Gray)wcgwmB400
Cla022725CSPI02G17490Wild cucumber (PI 183967)cpiwmB116
Cla022725CmaCh05G000560Cucurbita maxima (Rimu)cmawmB753
Cla022725CmoCh05G000620Cucurbita moschata (Rifu)cmowmB748
Cla022725Lsi08G016280Bottle gourd (USVL1VR-Ls)lsiwmB465
Cla022725Cp4.1LG07g00520Cucurbita pepo (Zucchini)cpewmB789
Cla022725Cp4.1LG11g00400Cucurbita pepo (Zucchini)cpewmB101
Cla022725CsGy2G017460Cucumber (Gy14) v2cgybwmB108
Cla022725Carg21844Silver-seed gourdcarwmB0500
Cla022725Carg20480Silver-seed gourdcarwmB0621
Cla022725CsaV3_2G025090Cucumber (Chinese Long) v3cucwmB124
Cla022725Bhi04G000511Wax gourdwgowmB297
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla022725Cucumber (Chinese Long) v3cucwmB399
Cla022725Watermelon (97103) v2wmwmbB095
Cla022725Wax gourdwgowmB540
Cla022725Watermelon (97103) v1wmwmB063
Cla022725Cucumber (Gy14) v1cgywmB078
Cla022725Cucumber (Gy14) v1cgywmB706
Cla022725Cucurbita maxima (Rimu)cmawmB154
Cla022725Cucurbita maxima (Rimu)cmawmB364
Cla022725Cucurbita maxima (Rimu)cmawmB670
Cla022725Cucurbita moschata (Rifu)cmowmB139
Cla022725Cucurbita moschata (Rifu)cmowmB666
Cla022725Wild cucumber (PI 183967)cpiwmB382
Cla022725Melon (DHL92) v3.5.1mewmB048
Cla022725Melon (DHL92) v3.5.1mewmB300
Cla022725Watermelon (Charleston Gray)wcgwmB278
Cla022725Cucumber (Chinese Long) v2cuwmB111
Cla022725Cucumber (Chinese Long) v2cuwmB376
Cla022725Cucurbita pepo (Zucchini)cpewmB022
Cla022725Cucurbita pepo (Zucchini)cpewmB397
Cla022725Bottle gourd (USVL1VR-Ls)lsiwmB296
Cla022725Cucumber (Gy14) v2cgybwmB349
Cla022725Melon (DHL92) v3.6.1medwmB049
Cla022725Melon (DHL92) v3.6.1medwmB295
Cla022725Silver-seed gourdcarwmB0230