Cla022391 (gene) Watermelon (97103) v1

Overview
NameCla022391
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionOrnithine decarboxylase (AHRD V1 ***- E0WN94_NICGL); contains Interpro domain(s) IPR000183 Orn/DAP/Arg decarboxylase 2
LocationChr8 : 23219400 .. 23219780 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTACATTGGCGATGAACATAATCGGAAAGCGAGTGAGGGGAGATTTGAGAGAATATTGGATAACTGATGGAATATATGGGTCAATGAATTGCATTTTCAATGATTACGCGGTTGTCACGTGCTTCCTATTAGCCACCACCTCAAACCCTCAAAATGTGACGTGTAAAAATGGTGAGGTGTACAAATCGGCGGTGTTTGGACCCACATGCGATGCTTTTGATACAATTCGACTAGTTATTGGCTACCGGATATGGAGGTGGATGATTGGTTGTTGTTTCCTGACATGGGTGCCTCCACATCAGCAACTGGATCCAACTTTAATGGGTTTACCACCTCCTCCATATCCACCAATCTTGCTTACTCCTCCAATCTTTTTTTGA

mRNA sequence

TTTACATTGGCGATGAACATAATCGGAAAGCGAGTGAGGGGAGATTTGAGAGAATATTGGATAACTGATGGAATATATGGGTCAATGAATTGCATTTTCAATGATTACGCGGTTGTCACGTGCTTCCTATTAGCCACCACCTCAAACCCTCAAAATGTGACGTGTAAAAATGGTGAGGTGTACAAATCGGCGGTGTTTGGACCCACATGCGATGCTTTTGATACAATTCGACTAGTTATTGGCTACCGGATATGGAGGTGGATGATTGGTTGTTGTTTCCTGACATGGGTGCCTCCACATCAGCAACTGGATCCAACTTTAATGGGTTTACCACCTCCTCCATATCCACCAATCTTGCTTACTCCTCCAATCTTTTTTTGA

Coding sequence (CDS)

TTTACATTGGCGATGAACATAATCGGAAAGCGAGTGAGGGGAGATTTGAGAGAATATTGGATAACTGATGGAATATATGGGTCAATGAATTGCATTTTCAATGATTACGCGGTTGTCACGTGCTTCCTATTAGCCACCACCTCAAACCCTCAAAATGTGACGTGTAAAAATGGTGAGGTGTACAAATCGGCGGTGTTTGGACCCACATGCGATGCTTTTGATACAATTCGACTAGTTATTGGCTACCGGATATGGAGGTGGATGATTGGTTGTTGTTTCCTGACATGGGTGCCTCCACATCAGCAACTGGATCCAACTTTAATGGGTTTACCACCTCCTCCATATCCACCAATCTTGCTTACTCCTCCAATCTTTTTTTGA

Protein sequence

FTLAMNIIGKRVRGDLREYWITDGIYGSMNCIFNDYAVVTCFLLATTSNPQNVTCKNGEVYKSAVFGPTCDAFDTIRLVIGYRIWRWMIGCCFLTWVPPHQQLDPTLMGLPPPPYPPILLTPPIFF
Homology
[Close]
BLAST of Cla022391 vs. Swiss-Prot
Match: DCOR_CAPAN (Ornithine decarboxylase OS=Capsicum annuum GN=ODC PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.2e-22
Identity = 47/76 (61.84%), Postives = 54/76 (71.05%), Query Frame = 1 

Query: 1   FTLAMNIIGKRVRGDLREYWITDGIYGSMNCIFNDYAVVTCFLLATTSNPQNVTCKNGEV 60
           FTLA  IIGKRVRGDLREYWI DG+YGSMNC+  D+A VT   LA  SN  N+ C   ++
Sbjct: 311 FTLATTIIGKRVRGDLREYWINDGLYGSMNCVLYDHATVTATPLACMSNRVNLNCSGSKM 370

Query: 61  YKSAVFGPTCDAFDTI 77
           + S +FGPTCDA DT+
Sbjct: 371 FPSTIFGPTCDALDTV 386

[Close]
BLAST of Cla022391 vs. Swiss-Prot
Match: DCOR_SOLLC (Ornithine decarboxylase OS=Solanum lycopersicum GN=ODC PE=2 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-21
Identity = 46/76 (60.53%), Postives = 53/76 (69.74%), Query Frame = 1 

Query: 1   FTLAMNIIGKRVRGDLREYWITDGIYGSMNCIFNDYAVVTCFLLATTSNPQNVTCKNGEV 60
           FTLA  IIGKRVRG+L+EYWI DG+YGSMNC+  D+A VT   LA  SN  N+ C   + 
Sbjct: 307 FTLATTIIGKRVRGELKEYWINDGLYGSMNCVLYDHATVTATPLACMSNRNNLNCGGSKT 366

Query: 61  YKSAVFGPTCDAFDTI 77
           + S VFGPTCDA DT+
Sbjct: 367 FPSTVFGPTCDALDTV 382

[Close]
BLAST of Cla022391 vs. Swiss-Prot
Match: DCOR_DATST (Ornithine decarboxylase OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.6e-21
Identity = 46/76 (60.53%), Postives = 52/76 (68.42%), Query Frame = 1 

Query: 1   FTLAMNIIGKRVRGDLREYWITDGIYGSMNCIFNDYAVVTCFLLATTSNPQNVTCKNGEV 60
           FTLA  IIGKRVRG+LREYWI DG+YGSMNC+  D+A V    LA  SN  N+ C   + 
Sbjct: 307 FTLATTIIGKRVRGELREYWINDGLYGSMNCVLYDHATVNATPLACMSNRSNLNCGGSKT 366

Query: 61  YKSAVFGPTCDAFDTI 77
           + S VFGPTCDA DT+
Sbjct: 367 FPSTVFGPTCDALDTV 382

[Close]
BLAST of Cla022391 vs. Swiss-Prot
Match: DCOR_TRYBB (Ornithine decarboxylase OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-08
Identity = 34/90 (37.78%), Postives = 45/90 (50.00%), Query Frame = 1 

Query: 1   FTLAMNIIGKRVRGDLRE--------------YWITDGIYGSMNCIFNDYAVVTCFLLAT 60
           FTLA+N+I K+V   ++               Y++ DG+YGS NCI  D+AVV       
Sbjct: 282 FTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAVVRPL---- 341

Query: 61  TSNPQNVTCKNGEVYKSAVFGPTCDAFDTI 77
              PQ     N ++Y S+V+GPTCD  D I
Sbjct: 342 ---PQREPIPNEKLYPSSVWGPTCDGLDQI 364

[Close]
BLAST of Cla022391 vs. TrEMBL
Match: B9H5C8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s26760g PE=3 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-23
Identity = 54/76 (71.05%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 1   FTLAMNIIGKRVRGDLREYWITDGIYGSMNCIFNDYAVVTCFLLATTSNPQNVTCKNGEV 60
           FTLA NIIGKRVRGDLREYWI DGIYGSMNCI  D+A +TC  LA  SN  N+TCK    
Sbjct: 292 FTLATNIIGKRVRGDLREYWINDGIYGSMNCILYDHATITCTPLACNSNHANLTCKGLRA 351

Query: 61  YKSAVFGPTCDAFDTI 77
           Y S VFGPTCDA DT+
Sbjct: 352 YSSTVFGPTCDALDTV 367

[Close]
BLAST of Cla022391 vs. TrEMBL
Match: B9GQ69_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s01720g PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.0e-23
Identity = 53/79 (67.09%), Postives = 60/79 (75.95%), Query Frame = 1 

Query: 1   FTLAMNIIGKRVRGDLREYWITDGIYGSMNCIFNDYAVVTCFLLATTSNPQNVTCKNGEV 60
           FTLA N+IGKRVRG+LREYWI DGIYGS+NCI ND+A +TC  LA  SN  N TCK  + 
Sbjct: 257 FTLATNVIGKRVRGELREYWINDGIYGSLNCILNDHATITCTPLACNSNSANPTCKGEKS 316

Query: 61  YKSAVFGPTCDAFDTIRLV 80
           Y S VFGPTCDA DT+  V
Sbjct: 317 YSSMVFGPTCDALDTVLTV 335

[Close]
BLAST of Cla022391 vs. TrEMBL
Match: G4XUJ8_ERYCB (Ornithine decarboxylase OS=Erythroxylum coca GN=ODC PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 1 

Query: 1   FTLAMNIIGKRVRGDLREYWITDGIYGSMNCIFNDYAVVTCFLLATTSNPQNVTCKNGEV 60
           FTLA N+IG+RVRG+LREYWI DGIYGSMNCI  D+A VTC  LA TS+  N  CK   V
Sbjct: 290 FTLATNVIGRRVRGELREYWINDGIYGSMNCILYDHATVTCKPLACTSSRANPMCKGARV 349

Query: 61  YKSAVFGPTCDAFDTI---RLVIGYRIWRWMI 90
           Y S VFGPTCDA DT+    L+   ++  W++
Sbjct: 350 YNSTVFGPTCDALDTVMTGHLLPDLQVSDWLV 381

[Close]
BLAST of Cla022391 vs. TrEMBL
Match: A0A061FL05_THECC (Pyridoxal-dependent decarboxylase family protein, putative OS=Theobroma cacao GN=TCM_034310 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.3e-22
Identity = 54/76 (71.05%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 1   FTLAMNIIGKRVRGDLREYWITDGIYGSMNCIFNDYAVVTCFLLATTSNPQNVTCKNGEV 60
           FTLA NIIGKRVRGDLREYWI DGIYGSMNCI  D+AVVTC  LA  S+P+   CK    
Sbjct: 290 FTLATNIIGKRVRGDLREYWINDGIYGSMNCILYDHAVVTCMPLARASSPR---CKGART 349

Query: 61  YKSAVFGPTCDAFDTI 77
           Y S VFGPTCDA DT+
Sbjct: 350 YDSTVFGPTCDALDTV 362

[Close]
BLAST of Cla022391 vs. TrEMBL
Match: A2TBH8_THECC (Putative ornithine decarboxylase OS=Theobroma cacao PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.3e-22
Identity = 54/76 (71.05%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 1   FTLAMNIIGKRVRGDLREYWITDGIYGSMNCIFNDYAVVTCFLLATTSNPQNVTCKNGEV 60
           FTLA NIIGKRVRGDLREYWI DGIYGSMNCI  D+AVVTC  LA  S+P+   CK    
Sbjct: 290 FTLATNIIGKRVRGDLREYWINDGIYGSMNCILYDHAVVTCMPLARASSPR---CKGART 349

Query: 61  YKSAVFGPTCDAFDTI 77
           Y S VFGPTCDA DT+
Sbjct: 350 YDSTVFGPTCDALDTV 362

[Close]
BLAST of Cla022391 vs. NCBI nr
Match: gi|743918189|ref|XP_011003098.1| (PREDICTED: ornithine decarboxylase-like [Populus euphratica])

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-23
Identity = 54/76 (71.05%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 1   FTLAMNIIGKRVRGDLREYWITDGIYGSMNCIFNDYAVVTCFLLATTSNPQNVTCKNGEV 60
           FTLA NIIGKRVRGDLREYWI DGIYGSMNCI  D+A +TC  LA  SN  N+TCK    
Sbjct: 292 FTLATNIIGKRVRGDLREYWINDGIYGSMNCILYDHATITCTPLACNSNRANLTCKGLRA 351

Query: 61  YKSAVFGPTCDAFDTI 77
           Y S VFGPTCDA DT+
Sbjct: 352 YSSTVFGPTCDALDTV 367

[Close]
BLAST of Cla022391 vs. NCBI nr
Match: gi|566173405|ref|XP_002307756.2| (hypothetical protein POPTR_0005s26760g [Populus trichocarpa])

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-23
Identity = 54/76 (71.05%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 1   FTLAMNIIGKRVRGDLREYWITDGIYGSMNCIFNDYAVVTCFLLATTSNPQNVTCKNGEV 60
           FTLA NIIGKRVRGDLREYWI DGIYGSMNCI  D+A +TC  LA  SN  N+TCK    
Sbjct: 292 FTLATNIIGKRVRGDLREYWINDGIYGSMNCILYDHATITCTPLACNSNHANLTCKGLRA 351

Query: 61  YKSAVFGPTCDAFDTI 77
           Y S VFGPTCDA DT+
Sbjct: 352 YSSTVFGPTCDALDTV 367

[Close]
BLAST of Cla022391 vs. NCBI nr
Match: gi|224061945|ref|XP_002300677.1| (hypothetical protein POPTR_0002s01720g [Populus trichocarpa])

HSP 1 Score: 116.7 bits (291), Expect = 2.9e-23
Identity = 53/79 (67.09%), Postives = 60/79 (75.95%), Query Frame = 1 

Query: 1   FTLAMNIIGKRVRGDLREYWITDGIYGSMNCIFNDYAVVTCFLLATTSNPQNVTCKNGEV 60
           FTLA N+IGKRVRG+LREYWI DGIYGS+NCI ND+A +TC  LA  SN  N TCK  + 
Sbjct: 257 FTLATNVIGKRVRGELREYWINDGIYGSLNCILNDHATITCTPLACNSNSANPTCKGEKS 316

Query: 61  YKSAVFGPTCDAFDTIRLV 80
           Y S VFGPTCDA DT+  V
Sbjct: 317 YSSMVFGPTCDALDTVLTV 335

[Close]
BLAST of Cla022391 vs. NCBI nr
Match: gi|720032279|ref|XP_010266064.1| (PREDICTED: ornithine decarboxylase-like [Nelumbo nucifera])

HSP 1 Score: 115.5 bits (288), Expect = 6.5e-23
Identity = 55/76 (72.37%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 1   FTLAMNIIGKRVRGDLREYWITDGIYGSMNCIFNDYAVVTCFLLATTSNPQNVTCKNGEV 60
           FTLA NIIGKRVRG LREYWI DGIYGSMNCI  D+A VT   LA TSN  N TC+ G+ 
Sbjct: 300 FTLATNIIGKRVRGKLREYWINDGIYGSMNCILYDHATVTATPLACTSNRSNPTCRGGKT 359

Query: 61  YKSAVFGPTCDAFDTI 77
           Y S VFGPTCDA DTI
Sbjct: 360 YTSTVFGPTCDALDTI 375

[Close]
BLAST of Cla022391 vs. NCBI nr
Match: gi|1009108937|ref|XP_015887436.1| (PREDICTED: ornithine decarboxylase-like [Ziziphus jujuba])

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-22
Identity = 53/76 (69.74%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 1   FTLAMNIIGKRVRGDLREYWITDGIYGSMNCIFNDYAVVTCFLLATTSNPQNVTCKNGEV 60
           FTLA NIIGKRVRG+LREYWI DGIYGSMNCI  D+AV+ C  LA  SN  N TCK  + 
Sbjct: 296 FTLAANIIGKRVRGELREYWINDGIYGSMNCILYDHAVMKCEALACASNGSNPTCKGAKR 355

Query: 61  YKSAVFGPTCDAFDTI 77
           Y S VFGPTCDA DT+
Sbjct: 356 YSSTVFGPTCDALDTV 371

The following BLAST results are available for this feature:
BLAST of Cla022391 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DCOR_CAPAN3.2e-2261.84Ornithine decarboxylase OS=Capsicum annuum GN=ODC PE=2 SV=1[more]
DCOR_SOLLC2.1e-2160.53Ornithine decarboxylase OS=Solanum lycopersicum GN=ODC PE=2 SV=2[more]
DCOR_DATST3.6e-2160.53Ornithine decarboxylase OS=Datura stramonium PE=2 SV=1[more]
DCOR_TRYBB1.2e-0837.78Ornithine decarboxylase OS=Trypanosoma brucei brucei PE=1 SV=2[more]
BLAST of Cla022391 vs. TrEMBL
Match NameE-valueIdentityDescription
B9H5C8_POPTR1.6e-2371.05Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s26760g PE=3 SV=2[more]
B9GQ69_POPTR2.0e-2367.09Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s01720g PE=3 SV=1[more]
G4XUJ8_ERYCB1.3e-2258.70Ornithine decarboxylase OS=Erythroxylum coca GN=ODC PE=2 SV=1[more]
A0A061FL05_THECC2.3e-2271.05Pyridoxal-dependent decarboxylase family protein, putative OS=Theobroma cacao GN... [more]
A2TBH8_THECC2.3e-2271.05Putative ornithine decarboxylase OS=Theobroma cacao PE=2 SV=1[more]
BLAST of Cla022391 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|743918189|ref|XP_011003098.1|2.2e-2371.05PREDICTED: ornithine decarboxylase-like [Populus euphratica][more]
gi|566173405|ref|XP_002307756.2|2.2e-2371.05hypothetical protein POPTR_0005s26760g [Populus trichocarpa][more]
gi|224061945|ref|XP_002300677.1|2.9e-2367.09hypothetical protein POPTR_0002s01720g [Populus trichocarpa][more]
gi|720032279|ref|XP_010266064.1|6.5e-2372.37PREDICTED: ornithine decarboxylase-like [Nelumbo nucifera][more]
gi|1009108937|ref|XP_015887436.1|1.5e-2269.74PREDICTED: ornithine decarboxylase-like [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002433Orn_de-COase
IPR009006Ala_racemase/Decarboxylase_C
IPR022643De-COase2_C
Vocabulary: Biological Process
TermDefinition
GO:0006596polyamine biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006596 polyamine biosynthetic process
biological_process GO:0006525 arginine metabolic process
biological_process GO:0006560 proline metabolic process
biological_process GO:0033387 putrescine biosynthetic process from ornithine
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
molecular_function GO:0016831 carboxy-lyase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004586 ornithine decarboxylase activity
molecular_function GO:0016829 lyase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla022391Cla022391.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002433Ornithine decarboxylasePRINTSPR01182ORNDCRBXLASEcoord: 64..74
score: 3.7E-6coord: 23..36
score: 3.
IPR009006Alanine racemase/group IV decarboxylase, C-terminalGENE3DG3DSA:2.40.37.10coord: 1..76
score: 1.3
IPR009006Alanine racemase/group IV decarboxylase, C-terminalunknownSSF50621Alanine racemase C-terminal domain-likecoord: 2..76
score: 8.58
IPR022643Orn/DAP/Arg decarboxylase 2, C-terminalPFAMPF00278Orn_DAP_Arg_deCcoord: 3..76
score: 2.
NoneNo IPR availablePANTHERPTHR11482ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASEcoord: 1..77
score: 3.4
NoneNo IPR availablePANTHERPTHR11482:SF6ORNITHINE DECARBOXYLASE 1-RELATEDcoord: 1..77
score: 3.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla022391Cla97C08G157510Watermelon (97103) v2wmwmbB100
Cla022391Csa2G348140Cucumber (Chinese Long) v2cuwmB112
Cla022391MELO3C011335Melon (DHL92) v3.5.1mewmB307
Cla022391ClCG08G013980Watermelon (Charleston Gray)wcgwmB400
Cla022391CSPI02G16900Wild cucumber (PI 183967)cpiwmB117
Cla022391Cucsa.394080Cucumber (Gy14) v1cgywmB707
Cla022391CmaCh12G003860Cucurbita maxima (Rimu)cmawmB148
Cla022391CmoCh12G003360Cucurbita moschata (Rifu)cmowmB134
Cla022391Lsi08G012860Bottle gourd (USVL1VR-Ls)lsiwmB465
Cla022391Cp4.1LG07g03370Cucurbita pepo (Zucchini)cpewmB782
Cla022391CsGy2G016870Cucumber (Gy14) v2cgybwmB109
Cla022391MELO3C011335.2Melon (DHL92) v3.6.1medwmB300
Cla022391Carg03971Silver-seed gourdcarwmB0978
Cla022391CsaV3_2G024480Cucumber (Chinese Long) v3cucwmB125
Cla022391Bhi04G000082Wax gourdwgowmB298
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla022391Watermelon (97103) v1wmwmB073
Cla022391Cucurbita maxima (Rimu)cmawmB753
Cla022391Cucurbita moschata (Rifu)cmowmB748
Cla022391Wild cucumber (PI 183967)cpiwmB595
Cla022391Watermelon (Charleston Gray)wcgwmB179
Cla022391Cucumber (Chinese Long) v2cuwmB577
Cla022391Cucurbita pepo (Zucchini)cpewmB101
Cla022391Cucurbita pepo (Zucchini)cpewmB250
Cla022391Bottle gourd (USVL1VR-Ls)lsiwmB091
Cla022391Cucumber (Gy14) v2cgybwmB540
Cla022391Silver-seed gourdcarwmB0133
Cla022391Watermelon (97103) v2wmwmbB087