Cla022370 (gene) Watermelon (97103) v1

Overview
NameCla022370
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionMembrane-associated progesterone receptor component 1 (AHRD V1 **-- C9SMW7_VERA1); contains Interpro domain(s) IPR001199 Cytochrome b5
LocationChr8 : 23036266 .. 23036565 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCTTACACCTCAGCAACTATTGGCCTACAATGGCACCGACCGATCAAAGCCAATCTATGTGGCTTTGAAGGGCCGTATTTACGACGTAACAACAGGGGCTTTTTTATACGGCCCCGGTGGTCCATACGCCATTTTCGCCGGCAAGGACGCGAGCAGAGCTCTGGCCAAGATGACCAAGAACGAGGCGGACGTCACCTCTTCCCTTACCGGCCTCTCCGAGAAAGAAATCGCTGCTCTCAACAACTGGGAGAAGAAATTTCAAGCTAAGTACCCTATTGTTGGCCGTGTTGTTTAA

mRNA sequence

ATGGAGCTTACACCTCAGCAACTATTGGCCTACAATGGCACCGACCGATCAAAGCCAATCTATGTGGCTTTGAAGGGCCGTATTTACGACGTAACAACAGGGGCTTTTTTATACGGCCCCGGTGGTCCATACGCCATTTTCGCCGGCAAGGACGCGAGCAGAGCTCTGGCCAAGATGACCAAGAACGAGGCGGACGTCACCTCTTCCCTTACCGGCCTCTCCGAGAAAGAAATCGCTGCTCTCAACAACTGGGAGAAGAAATTTCAAGCTAAGTACCCTATTGTTGGCCGTGTTGTTTAA

Coding sequence (CDS)

ATGGAGCTTACACCTCAGCAACTATTGGCCTACAATGGCACCGACCGATCAAAGCCAATCTATGTGGCTTTGAAGGGCCGTATTTACGACGTAACAACAGGGGCTTTTTTATACGGCCCCGGTGGTCCATACGCCATTTTCGCCGGCAAGGACGCGAGCAGAGCTCTGGCCAAGATGACCAAGAACGAGGCGGACGTCACCTCTTCCCTTACCGGCCTCTCCGAGAAAGAAATCGCTGCTCTCAACAACTGGGAGAAGAAATTTCAAGCTAAGTACCCTATTGTTGGCCGTGTTGTTTAA

Protein sequence

MELTPQQLLAYNGTDRSKPIYVALKGRIYDVTTGAFLYGPGGPYAIFAGKDASRALAKMTKNEADVTSSLTGLSEKEIAALNNWEKKFQAKYPIVGRVV
Homology
[Close]
BLAST of Cla022370 vs. Swiss-Prot
Match: SBP3_ARATH (Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 4.5e-35
Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 1 

Query: 1   MELTPQQLLAYNGTDRSKPIYVALKGRIYDVTTGAFLYGPGGPYAIFAGKDASRALAKMT 60
           ME T +QL  YNGTD SKPIYVA+KGR++DVTTG   YG GG Y++FAGKDASRAL KM+
Sbjct: 1   MEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMS 60

Query: 61  KNEADVTSSLTGLSEKEIAALNNWEKKFQAKYPIVGRVV 100
           KNE DV+ SL GL+EKEI  LN+WE KF+AKYP+VGRVV
Sbjct: 61  KNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 99

[Close]
BLAST of Cla022370 vs. Swiss-Prot
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-24
Identity = 51/97 (52.58%), Postives = 69/97 (71.13%), Query Frame = 1 

Query: 2   ELTPQQLLAYNGTDRSKPIYVALKGRIYDVTTGAFLYGPGGPYAIFAGKDASRALAKMTK 61
           E+T ++L  Y+G+D  KP+ +A+KG+IYDV+     YGPGGPYA+FAGKDASRALAKM+ 
Sbjct: 70  EITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSF 129

Query: 62  NEADVTSSLTGLSEKEIAALNNWEKKFQAKYPIVGRV 99
            + D+T  ++GL   E+ AL +WE KF +KY  VG +
Sbjct: 130 EDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTI 166

[Close]
BLAST of Cla022370 vs. Swiss-Prot
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 6.1e-24
Identity = 53/97 (54.64%), Postives = 68/97 (70.10%), Query Frame = 1 

Query: 2   ELTPQQLLAYNGTDRSKPIYVALKGRIYDVTTGAFLYGPGGPYAIFAGKDASRALAKMTK 61
           E+T ++L  Y+G+D  KP+ +A+K +IYDVT     YGPGGPYA+FAGKDASRALAKM+ 
Sbjct: 74  EITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSF 133

Query: 62  NEADVTSSLTGLSEKEIAALNNWEKKFQAKYPIVGRV 99
            E D+T  ++GL   E+ AL +WE KF +KY  VG V
Sbjct: 134 EEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGTV 170

[Close]
BLAST of Cla022370 vs. Swiss-Prot
Match: NENF_MOUSE (Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-19
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 1 

Query: 4   TPQQLLAYNGTDRSKPIYVALKGRIYDVTTGAFLYGPGGPYAIFAGKDASRALAKMTKNE 63
           T ++L  Y G +  +PIY+A+KG ++DVT+G   YG G PY   AGKD+SR +AKM+ + 
Sbjct: 47  TEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDP 106

Query: 64  ADVTSSLTGLSEKEIAALNN-WEKKFQAKYPIVG 97
           AD+T   TGL+ KE+ AL++ + K ++AKYPIVG
Sbjct: 107 ADLTHDTTGLTAKELEALDDVFSKVYKAKYPIVG 140

[Close]
BLAST of Cla022370 vs. Swiss-Prot
Match: NENF_RAT (Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-19
Identity = 45/94 (47.87%), Postives = 67/94 (71.28%), Query Frame = 1 

Query: 4   TPQQLLAYNGTDRSKPIYVALKGRIYDVTTGAFLYGPGGPYAIFAGKDASRALAKMTKNE 63
           T ++L  Y+G +  +PIY+A+KG ++DVT+G   YG G PY   AGKD+SR +AKM+ + 
Sbjct: 47  TEEELARYSGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDP 106

Query: 64  ADVTSSLTGLSEKEIAALNN-WEKKFQAKYPIVG 97
           AD+T  ++GL+ KE+ AL++ + K ++AKYPIVG
Sbjct: 107 ADLTHDISGLTAKELEALDDIFSKVYKAKYPIVG 140

[Close]
BLAST of Cla022370 vs. TrEMBL
Match: M5XM79_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013839mg PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 6.7e-38
Identity = 78/99 (78.79%), Postives = 87/99 (87.88%), Query Frame = 1 

Query: 1   MELTPQQLLAYNGTDRSKPIYVALKGRIYDVTTGAFLYGPGGPYAIFAGKDASRALAKMT 60
           MELT QQL+ YNGTD SKPIYVALKGR++DVT G   YGPGGPYA+FAGKDASRALAKMT
Sbjct: 1   MELTAQQLIQYNGTDPSKPIYVALKGRVFDVTDGKSFYGPGGPYAMFAGKDASRALAKMT 60

Query: 61  KNEADVTSSLTGLSEKEIAALNNWEKKFQAKYPIVGRVV 100
           KNE D+T+SL GLSEKEI  L +WEKKF+AKYP+VGRVV
Sbjct: 61  KNEEDITASLDGLSEKEIGVLTDWEKKFEAKYPVVGRVV 99

[Close]
BLAST of Cla022370 vs. TrEMBL
Match: A0A0A0LQG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382750 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.4e-37
Identity = 79/99 (79.80%), Postives = 86/99 (86.87%), Query Frame = 1 

Query: 1   MELTPQQLLAYNGTDRSKPIYVALKGRIYDVTTGAFLYGPGGPYAIFAGKDASRALAKMT 60
           MELTP QL  YNGTD +KPIYVALKG+IY+VT+G   YG GGPYA+FAGKDASRALAKMT
Sbjct: 1   MELTPLQLSVYNGTDPTKPIYVALKGQIYNVTSGRSFYGSGGPYAMFAGKDASRALAKMT 60

Query: 61  KNEADVTSSLTGLSEKEIAALNNWEKKFQAKYPIVGRVV 100
           KNE D+TSSL GLSEKEI  LN+WE KFQAKYPIVGRVV
Sbjct: 61  KNEEDITSSLEGLSEKEIGVLNDWENKFQAKYPIVGRVV 99

[Close]
BLAST of Cla022370 vs. TrEMBL
Match: I1JU53_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G060000 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-36
Identity = 75/99 (75.76%), Postives = 86/99 (86.87%), Query Frame = 1 

Query: 1   MELTPQQLLAYNGTDRSKPIYVALKGRIYDVTTGAFLYGPGGPYAIFAGKDASRALAKMT 60
           MELTPQQL  YNGTD SKPIYVA+KGR+YDVTTG   YGPGGPYA+FAGKDASRALAKM+
Sbjct: 1   MELTPQQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGPYAMFAGKDASRALAKMS 60

Query: 61  KNEADVTSSLTGLSEKEIAALNNWEKKFQAKYPIVGRVV 100
           KN+ D++ SL GLS+KEI  LN+WE KFQAKYP+V RV+
Sbjct: 61  KNDDDISPSLDGLSDKEIGVLNDWENKFQAKYPVVARVL 99

[Close]
BLAST of Cla022370 vs. TrEMBL
Match: A0A0S3RBL7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G070400 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.7e-36
Identity = 74/99 (74.75%), Postives = 85/99 (85.86%), Query Frame = 1 

Query: 1   MELTPQQLLAYNGTDRSKPIYVALKGRIYDVTTGAFLYGPGGPYAIFAGKDASRALAKMT 60
           M+LTP QL  YNGTD SKPIYVA+KGR+YDVTTG   YGPGG YA+FAGKDASRALAKM+
Sbjct: 1   MDLTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMS 60

Query: 61  KNEADVTSSLTGLSEKEIAALNNWEKKFQAKYPIVGRVV 100
           KN+ D++ SL GLSEKEI  LN+WE KFQAKYP+VGRV+
Sbjct: 61  KNDEDISPSLDGLSEKEIGVLNDWENKFQAKYPVVGRVI 99

[Close]
BLAST of Cla022370 vs. TrEMBL
Match: A0A0L9UHB3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g227400 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.7e-36
Identity = 74/99 (74.75%), Postives = 85/99 (85.86%), Query Frame = 1 

Query: 1   MELTPQQLLAYNGTDRSKPIYVALKGRIYDVTTGAFLYGPGGPYAIFAGKDASRALAKMT 60
           M+LTP QL  YNGTD SKPIYVA+KGR+YDVTTG   YGPGG YA+FAGKDASRALAKM+
Sbjct: 1   MDLTPHQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGAYAMFAGKDASRALAKMS 60

Query: 61  KNEADVTSSLTGLSEKEIAALNNWEKKFQAKYPIVGRVV 100
           KN+ D++ SL GLSEKEI  LN+WE KFQAKYP+VGRV+
Sbjct: 61  KNDEDISPSLDGLSEKEIGVLNDWENKFQAKYPVVGRVI 99

[Close]
BLAST of Cla022370 vs. NCBI nr
Match: gi|659088998|ref|XP_008445274.1| (PREDICTED: probable steroid-binding protein 3 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 3.5e-40
Identity = 83/99 (83.84%), Postives = 90/99 (90.91%), Query Frame = 1 

Query: 1   MELTPQQLLAYNGTDRSKPIYVALKGRIYDVTTGAFLYGPGGPYAIFAGKDASRALAKMT 60
           MELTP+QLLAYNGTD SKPIYVA+KG+IYDVT+G   YGPGGPYA+FAGKDASRALAKMT
Sbjct: 1   MELTPRQLLAYNGTDPSKPIYVAMKGQIYDVTSGGSFYGPGGPYAMFAGKDASRALAKMT 60

Query: 61  KNEADVTSSLTGLSEKEIAALNNWEKKFQAKYPIVGRVV 100
           KNE D+TSSL GLSEKEI  LN+WE KFQAKYPIVGRVV
Sbjct: 61  KNEEDITSSLEGLSEKEIGVLNDWENKFQAKYPIVGRVV 99

[Close]
BLAST of Cla022370 vs. NCBI nr
Match: gi|659089000|ref|XP_008445275.1| (PREDICTED: probable steroid-binding protein 3 [Cucumis melo])

HSP 1 Score: 166.8 bits (421), Expect = 1.9e-38
Identity = 80/99 (80.81%), Postives = 90/99 (90.91%), Query Frame = 1 

Query: 1   MELTPQQLLAYNGTDRSKPIYVALKGRIYDVTTGAFLYGPGGPYAIFAGKDASRALAKMT 60
           ++LTPQQLLAYNG+DRSKP+YVALKGRIYDVT    LYGPGG Y++FAGKDASRALAKM+
Sbjct: 3   LKLTPQQLLAYNGSDRSKPLYVALKGRIYDVTKSILLYGPGGSYSMFAGKDASRALAKMS 62

Query: 61  KNEADVTSSLTGLSEKEIAALNNWEKKFQAKYPIVGRVV 100
           KN  D+TSSL GLSEKEI+ LN+WEKKFQAKYPIVGRVV
Sbjct: 63  KNILDITSSLVGLSEKEISVLNDWEKKFQAKYPIVGRVV 101

[Close]
BLAST of Cla022370 vs. NCBI nr
Match: gi|596288910|ref|XP_007226013.1| (hypothetical protein PRUPE_ppa013839mg [Prunus persica])

HSP 1 Score: 164.5 bits (415), Expect = 9.7e-38
Identity = 78/99 (78.79%), Postives = 87/99 (87.88%), Query Frame = 1 

Query: 1   MELTPQQLLAYNGTDRSKPIYVALKGRIYDVTTGAFLYGPGGPYAIFAGKDASRALAKMT 60
           MELT QQL+ YNGTD SKPIYVALKGR++DVT G   YGPGGPYA+FAGKDASRALAKMT
Sbjct: 1   MELTAQQLIQYNGTDPSKPIYVALKGRVFDVTDGKSFYGPGGPYAMFAGKDASRALAKMT 60

Query: 61  KNEADVTSSLTGLSEKEIAALNNWEKKFQAKYPIVGRVV 100
           KNE D+T+SL GLSEKEI  L +WEKKF+AKYP+VGRVV
Sbjct: 61  KNEEDITASLDGLSEKEIGVLTDWEKKFEAKYPVVGRVV 99

[Close]
BLAST of Cla022370 vs. NCBI nr
Match: gi|449441856|ref|XP_004138698.1| (PREDICTED: probable steroid-binding protein 3 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 6.3e-37
Identity = 79/99 (79.80%), Postives = 86/99 (86.87%), Query Frame = 1 

Query: 1   MELTPQQLLAYNGTDRSKPIYVALKGRIYDVTTGAFLYGPGGPYAIFAGKDASRALAKMT 60
           MELTP QL  YNGTD +KPIYVALKG+IY+VT+G   YG GGPYA+FAGKDASRALAKMT
Sbjct: 1   MELTPLQLSVYNGTDPTKPIYVALKGQIYNVTSGRSFYGSGGPYAMFAGKDASRALAKMT 60

Query: 61  KNEADVTSSLTGLSEKEIAALNNWEKKFQAKYPIVGRVV 100
           KNE D+TSSL GLSEKEI  LN+WE KFQAKYPIVGRVV
Sbjct: 61  KNEEDITSSLEGLSEKEIGVLNDWENKFQAKYPIVGRVV 99

[Close]
BLAST of Cla022370 vs. NCBI nr
Match: gi|356507182|ref|XP_003522349.1| (PREDICTED: probable steroid-binding protein 3 [Glycine max])

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-36
Identity = 75/99 (75.76%), Postives = 86/99 (86.87%), Query Frame = 1 

Query: 1   MELTPQQLLAYNGTDRSKPIYVALKGRIYDVTTGAFLYGPGGPYAIFAGKDASRALAKMT 60
           MELTPQQL  YNGTD SKPIYVA+KGR+YDVTTG   YGPGGPYA+FAGKDASRALAKM+
Sbjct: 1   MELTPQQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGPYAMFAGKDASRALAKMS 60

Query: 61  KNEADVTSSLTGLSEKEIAALNNWEKKFQAKYPIVGRVV 100
           KN+ D++ SL GLS+KEI  LN+WE KFQAKYP+V RV+
Sbjct: 61  KNDDDISPSLDGLSDKEIGVLNDWENKFQAKYPVVARVL 99

The following BLAST results are available for this feature:
BLAST of Cla022370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SBP3_ARATH4.5e-3570.71Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1[more]
MSBP2_ARATH1.6e-2452.58Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1[more]
MSBP1_ARATH6.1e-2454.64Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2[more]
NENF_MOUSE2.6e-1948.94Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1[more]
NENF_RAT2.6e-1947.87Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1[more]
BLAST of Cla022370 vs. TrEMBL
Match NameE-valueIdentityDescription
M5XM79_PRUPE6.7e-3878.79Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013839mg PE=3 SV=1[more]
A0A0A0LQG3_CUCSA4.4e-3779.80Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382750 PE=3 SV=1[more]
I1JU53_SOYBN1.3e-3675.76Uncharacterized protein OS=Glycine max GN=GLYMA_04G060000 PE=3 SV=1[more]
A0A0S3RBL7_PHAAN3.7e-3674.75Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G070400 PE=... [more]
A0A0L9UHB3_PHAAN3.7e-3674.75Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g227400 PE=3 SV=1[more]
BLAST of Cla022370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659088998|ref|XP_008445274.1|3.5e-4083.84PREDICTED: probable steroid-binding protein 3 [Cucumis melo][more]
gi|659089000|ref|XP_008445275.1|1.9e-3880.81PREDICTED: probable steroid-binding protein 3 [Cucumis melo][more]
gi|596288910|ref|XP_007226013.1|9.7e-3878.79hypothetical protein PRUPE_ppa013839mg [Prunus persica][more]
gi|449441856|ref|XP_004138698.1|6.3e-3779.80PREDICTED: probable steroid-binding protein 3 [Cucumis sativus][more]
gi|356507182|ref|XP_003522349.1|1.8e-3675.76PREDICTED: probable steroid-binding protein 3 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001199Cyt_B5-like_heme/steroid-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005829 cytosol
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU37512watermelon unigene v2 vs TrEMBLtranscribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla022370Cla022370.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU37512WMU37512transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001199Cytochrome b5-like heme/steroid binding domainGENE3DG3DSA:3.10.120.10coord: 2..99
score: 9.2
IPR001199Cytochrome b5-like heme/steroid binding domainPFAMPF00173Cyt-b5coord: 4..98
score: 2.2
IPR001199Cytochrome b5-like heme/steroid binding domainSMARTSM01117Cyt_b5_2coord: 3..99
score: 7.9
IPR001199Cytochrome b5-like heme/steroid binding domainunknownSSF55856Cytochrome b5-like heme/steroid binding domaincoord: 2..99
score: 1.44
NoneNo IPR availablePANTHERPTHR10281MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATEDcoord: 1..99
score: 8.0