Cla022353 (gene) Watermelon (97103) v1

Overview
NameCla022353
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionEthylene-responsive transcription factor 3 (AHRD V1 *-** B6TFS2_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding
LocationChr8 : 22814043 .. 22814675 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTAGACCACAACAGAGATTTCGTGGTGTCCGACAGCGCCATTGGGGCTCTTGGGTCTCGGAAATACGCCATCCCTTATTGTAAGTCTAGTTCTAAAAGGTTATAGGTTTGAATCTTTAATCTAACATAACACAAACAAACTGATATATGTAGTGATGTTATAAATACAGGAAAACTAGAATTTGGCTTGGTACTTTTGAGACGGCAGAAGACGCAGCACGAGCATACGATGAAGCCGCGCGCCTTATGTGTGGACCGAGAGCACGTACGAACTTCCCTTACGATGCCTCTCTCTCTCGCTCCTCGTCTTCACGCCTTCTCTCAGCTACTCTAACGGCTAAGCTCCACCGTTGCTACATGGCGTCTTTGCAGCTAACTAAGCAATCCTCCTCTGCTGCATGTCGCCCTCAAAATGACTTTTCCGTGGCATCCGGCATTGCTCCGGTCCAGCGAGTGGAAGCGGATACAACGACGGCGAAGAAAGTAAAACTGGAGAGCGTGGATTGTGGGGAGCCGTTGATGATTGAAATGTTGGACGAAGATCATATACAACAAATGATTGAGGAGCTGCTTGATTACGGTGGAATTGAGCTTCGTTCTGCTTCTGTTGTGCAGCCTCAACCCATTTGA

mRNA sequence

ATGCCTAGACCACAACAGAGATTTCGTGGTGTCCGACAGCGCCATTGGGGCTCTTGGGTCTCGGAAATACGCCATCCCTTATTGAAAACTAGAATTTGGCTTGGTACTTTTGAGACGGCAGAAGACGCAGCACGAGCATACGATGAAGCCGCGCGCCTTATGTGTGGACCGAGAGCACGTACGAACTTCCCTTACGATGCCTCTCTCTCTCGCTCCTCGTCTTCACGCCTTCTCTCAGCTACTCTAACGGCTAAGCTCCACCGTTGCTACATGGCGTCTTTGCAGCTAACTAAGCAATCCTCCTCTGCTGCATGTCGCCCTCAAAATGACTTTTCCGTGGCATCCGGCATTGCTCCGGTCCAGCGAGTGGAAGCGGATACAACGACGGCGAAGAAAGTAAAACTGGAGAGCGTGGATTGTGGGGAGCCGTTGATGATTGAAATGTTGGACGAAGATCATATACAACAAATGATTGAGGAGCTGCTTGATTACGGTGGAATTGAGCTTCGTTCTGCTTCTGTTGTGCAGCCTCAACCCATTTGA

Coding sequence (CDS)

ATGCCTAGACCACAACAGAGATTTCGTGGTGTCCGACAGCGCCATTGGGGCTCTTGGGTCTCGGAAATACGCCATCCCTTATTGAAAACTAGAATTTGGCTTGGTACTTTTGAGACGGCAGAAGACGCAGCACGAGCATACGATGAAGCCGCGCGCCTTATGTGTGGACCGAGAGCACGTACGAACTTCCCTTACGATGCCTCTCTCTCTCGCTCCTCGTCTTCACGCCTTCTCTCAGCTACTCTAACGGCTAAGCTCCACCGTTGCTACATGGCGTCTTTGCAGCTAACTAAGCAATCCTCCTCTGCTGCATGTCGCCCTCAAAATGACTTTTCCGTGGCATCCGGCATTGCTCCGGTCCAGCGAGTGGAAGCGGATACAACGACGGCGAAGAAAGTAAAACTGGAGAGCGTGGATTGTGGGGAGCCGTTGATGATTGAAATGTTGGACGAAGATCATATACAACAAATGATTGAGGAGCTGCTTGATTACGGTGGAATTGAGCTTCGTTCTGCTTCTGTTGTGCAGCCTCAACCCATTTGA

Protein sequence

MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAACRPQNDFSVASGIAPVQRVEADTTTAKKVKLESVDCGEPLMIEMLDEDHIQQMIEELLDYGGIELRSASVVQPQPI
Homology
[Close]
BLAST of Cla022353 vs. Swiss-Prot
Match: ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 7.1e-55
Identity = 114/182 (62.64%), Postives = 131/182 (71.98%), Query Frame = 1 

Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           M RPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTK------QSSSAACRPQNDFSVA 120
           TNFPY+ +   +SSS+LLSATLTAKLH+CYMASLQ+TK      Q+ +A  +  +   V 
Sbjct: 61  TNFPYNPNAIPTSSSKLLSATLTAKLHKCYMASLQMTKQTQTQTQTQTARSQSADSDGVT 120

Query: 121 SGIAPVQRVEADTTTAKKVKLESVDCGEPLMIEMLDEDHIQQMIEELLDYGGIELRSASV 177
           +  + + R   +TT   ++K E  +         L+EDHI+QMIEELL YG IEL S   
Sbjct: 121 ANESHLNRGVTETT---EIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIELCSVLP 179

[Close]
BLAST of Cla022353 vs. Swiss-Prot
Match: PZ02_LUPPO (Protein PPLZ02 OS=Lupinus polyphyllus GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.1e-44
Identity = 100/169 (59.17%), Postives = 116/169 (68.64%), Query Frame = 1 

Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           M RPQQR+RG RQRHWGSWVSEIRH +LKTRIW GTFE+AEDAARAYDEAARLMCG RAR
Sbjct: 1   MARPQQRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSS-----SAACRPQN---DFS 120
           TNFPY+ + S+SSSS+LLSATL AKLHRCYMASLQ+T+ SS          P N      
Sbjct: 61  TNFPYNPNASQSSSSKLLSATLIAKLHRCYMASLQMTRPSSLPEAPRIIASPNNAVKGIG 120

Query: 121 VASGIAPVQRVEADTTTA-----KKVKLESVDCGEPLMIEMLDEDHIQQ 157
             + + P +R + +  T      KKVK   V+C +    + L+EDHI Q
Sbjct: 121 ADAMLLPKKREQEEQETGGNLDFKKVK---VECSQ--QFKPLEEDHIAQ 164

[Close]
BLAST of Cla022353 vs. Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-26
Identity = 81/194 (41.75%), Postives = 106/194 (54.64%), Query Frame = 1 

Query: 6   QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 65
           ++FRGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 66  D-----------------ASLSRSSSSRLLSATLTAKLHRC------YMASLQLTKQSS- 125
           +                 +++S S+SS  LS+ L+AKL +C       +  L+L   SS 
Sbjct: 65  NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDTASSH 124

Query: 126 ------SAACRPQNDFSVASGIAPVQRVEADTTTAKK----VKLESVDCGEPLMIEMLDE 164
                  A  +  + + +   + P    +  T+ A +         V+ G     E+LDE
Sbjct: 125 IGVWQKRAGSKSDSSWVMTVELGPASSSQETTSKASQDAILAPTTEVEIGGS-REEVLDE 184

[Close]
BLAST of Cla022353 vs. Swiss-Prot
Match: SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 8.4e-24
Identity = 78/186 (41.94%), Postives = 95/186 (51.08%), Query Frame = 1 

Query: 6   QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 65
           ++FRGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5   RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 66  DASLSRSS----------SSRLLSATLTAKLHRC------YMASLQLTKQSSSAACRPQN 125
             S   S           S + LS  L AKL +        +  L+L   SS      + 
Sbjct: 65  VKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHIGVWQKR 124

Query: 126 DFSVAS----------GIAPVQRVEADTTTAKKVKLESVDCGEPLMIEMLDEDHI-QQMI 165
             S  S           +     V+   TT  K  +E  +  E  +I   DED +  +MI
Sbjct: 125 AGSKTSPTWVMRLELGNVVNESAVDLGLTTMNKQNVEKEEEEEEAIIS--DEDQLAMEMI 184

[Close]
BLAST of Cla022353 vs. Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-23
Identity = 79/182 (43.41%), Postives = 95/182 (52.20%), Query Frame = 1 

Query: 6   QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 65
           ++FRGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 66  DASLSRSS--------SSRLLSATLTAKLHR-C-----YMASLQLTKQSSSAACRPQNDF 125
             S   +S        S + LS  L AKL + C     Y+  L+L   SS      +   
Sbjct: 65  IKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQKRAG 124

Query: 126 SVAS---------GIAPVQRVEADTTTAKKVKLESVDCGEPLMIEMLDEDHIQQMIEELL 165
           S  S         G     R   D  T  K+K+ + D  E       D+    QMIEELL
Sbjct: 125 SKTSPNWVKLVELGDKVNARPGGDIET-NKMKVRNEDVQE-------DDQMAMQMIEELL 178

[Close]
BLAST of Cla022353 vs. TrEMBL
Match: A0A0A0LSL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382540 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 8.6e-84
Identity = 160/175 (91.43%), Postives = 165/175 (94.29%), Query Frame = 1 

Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAACRPQ-----NDFSVAS 120
           TNFPYDASLSRSSSSRLLSATLTAKLHRCY+AS+QLTKQSSSAA RPQ      DFSVAS
Sbjct: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYVASMQLTKQSSSAARRPQTDVIRTDFSVAS 120

Query: 121 GIAPVQRVEADTTTAKKVKLESVDCGEPLMIEMLDEDHIQQMIEELLDYGGIELR 171
           GIAPV+RVE DT TAKKVK+ESVDC EPLMIEMLD+DHIQQMIEELLDYGGIELR
Sbjct: 121 GIAPVERVEVDTMTAKKVKMESVDCEEPLMIEMLDDDHIQQMIEELLDYGGIELR 175

[Close]
BLAST of Cla022353 vs. TrEMBL
Match: V4UBY1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009593mg PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.0e-55
Identity = 126/198 (63.64%), Postives = 143/198 (72.22%), Query Frame = 1 

Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           M RPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAACRPQ----NDFSVASG 120
           TNFPY+ + S SSSS+LLSATLTAKLHRCYMASLQ+TK  SSAA  PQ    +  S  SG
Sbjct: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTK--SSAANEPQKAPASHVSTPSG 120

Query: 121 IA--------------PVQRVEADTTTAKKVKLESVDCGEPLMIEMLDEDHIQQMIEELL 180
            A              P+Q   +     + VK E V+  +    + L++DHI+QMIEELL
Sbjct: 121 NATRVNEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQ--QFKPLEDDHIEQMIEELL 180

[Close]
BLAST of Cla022353 vs. TrEMBL
Match: A0A067FJG7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029507mg PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.0e-55
Identity = 126/198 (63.64%), Postives = 143/198 (72.22%), Query Frame = 1 

Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           M RPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAACRPQ----NDFSVASG 120
           TNFPY+ + S SSSS+LLSATLTAKLHRCYMASLQ+TK  SSAA  PQ    +  S  SG
Sbjct: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTK--SSAANEPQKAPASHVSTPSG 120

Query: 121 IA--------------PVQRVEADTTTAKKVKLESVDCGEPLMIEMLDEDHIQQMIEELL 180
            A              P+Q   +     + VK E V+  +    + L++DHI+QMIEELL
Sbjct: 121 NATRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQ--QFKPLEDDHIEQMIEELL 180

[Close]
BLAST of Cla022353 vs. TrEMBL
Match: F6H3U5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g06000 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.0e-55
Identity = 123/192 (64.06%), Postives = 141/192 (73.44%), Query Frame = 1 

Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           M RPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAACRPQNDF-----SVAS 120
           TNFPY+ + S+SSSS+LLSATLTAKLHRCYMASLQLTKQS     +P         S+A 
Sbjct: 61  TNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQLTKQSLHEPQKPPTSHVATTTSIAG 120

Query: 121 GI------------APVQRVEADTTTAKKVKLESVDCGEPLMIEMLDEDHIQQMIEELLD 176
            +              VQ+ EA+    KKV+++S         + L++DHIQQMIEELLD
Sbjct: 121 KVGESGQWSPEKRPVTVQQPEAN-WVVKKVQVDS----NTQQFKPLEDDHIQQMIEELLD 180

[Close]
BLAST of Cla022353 vs. TrEMBL
Match: A0A059CSI0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02719 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.9e-55
Identity = 119/186 (63.98%), Postives = 137/186 (73.66%), Query Frame = 1 

Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           M RPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTK---QSSSAACRPQNDFSVASGI 120
           TNFPY+ ++S+SSSS+LLSATLTAKLHRCYMASLQ+TK   Q       P + F  A+GI
Sbjct: 61  TNFPYNPNMSQSSSSKLLSATLTAKLHRCYMASLQMTKSALQVQEPQKPPSSHFVNANGI 120

Query: 121 -----------APVQRVEADTTTAKKVKLESVDCGEPLMIEMLDEDHIQQMIEELLDYGG 173
                         Q  E+++   KK K+E     E    + L++DHIQQMIEELLDYG 
Sbjct: 121 FERNNDMGHQKMQFQLQESESWVIKKEKVEE---AETQQFKPLEDDHIQQMIEELLDYGS 180

[Close]
BLAST of Cla022353 vs. NCBI nr
Match: gi|659088962|ref|XP_008445253.1| (PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis melo])

HSP 1 Score: 320.1 bits (819), Expect = 2.5e-84
Identity = 162/175 (92.57%), Postives = 165/175 (94.29%), Query Frame = 1 

Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 41  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 100

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAACRPQ-----NDFSVAS 120
           TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAA RPQ      DFSVAS
Sbjct: 101 TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDVIRTDFSVAS 160

Query: 121 GIAPVQRVEADTTTAKKVKLESVDCGEPLMIEMLDEDHIQQMIEELLDYGGIELR 171
           GIAP +RVE D TTAKKVK+ESVDCGEPLMIEMLD+DHIQQMIEELLDYGGIELR
Sbjct: 161 GIAPGERVEVDGTTAKKVKMESVDCGEPLMIEMLDDDHIQQMIEELLDYGGIELR 215

[Close]
BLAST of Cla022353 vs. NCBI nr
Match: gi|449441876|ref|XP_004138708.1| (PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis sativus])

HSP 1 Score: 317.8 bits (813), Expect = 1.2e-83
Identity = 160/175 (91.43%), Postives = 165/175 (94.29%), Query Frame = 1 

Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAACRPQ-----NDFSVAS 120
           TNFPYDASLSRSSSSRLLSATLTAKLHRCY+AS+QLTKQSSSAA RPQ      DFSVAS
Sbjct: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYVASMQLTKQSSSAARRPQTDVIRTDFSVAS 120

Query: 121 GIAPVQRVEADTTTAKKVKLESVDCGEPLMIEMLDEDHIQQMIEELLDYGGIELR 171
           GIAPV+RVE DT TAKKVK+ESVDC EPLMIEMLD+DHIQQMIEELLDYGGIELR
Sbjct: 121 GIAPVERVEVDTMTAKKVKMESVDCEEPLMIEMLDDDHIQQMIEELLDYGGIELR 175

[Close]
BLAST of Cla022353 vs. NCBI nr
Match: gi|568859853|ref|XP_006483447.1| (PREDICTED: ethylene-responsive transcription factor ERF003 [Citrus sinensis])

HSP 1 Score: 224.6 bits (571), Expect = 1.4e-55
Identity = 126/198 (63.64%), Postives = 143/198 (72.22%), Query Frame = 1 

Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           M RPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAACRPQ----NDFSVASG 120
           TNFPY+ + S SSSS+LLSATLTAKLHRCYMASLQ+TK  SSAA  PQ    +  S  SG
Sbjct: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTK--SSAANEPQKAPASHVSTPSG 120

Query: 121 IA--------------PVQRVEADTTTAKKVKLESVDCGEPLMIEMLDEDHIQQMIEELL 180
            A              P+Q   +     + VK E V+  +    + L++DHI+QMIEELL
Sbjct: 121 NATRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQ--QFKPLEDDHIEQMIEELL 180

[Close]
BLAST of Cla022353 vs. NCBI nr
Match: gi|225430392|ref|XP_002285373.1| (PREDICTED: protein PPLZ02 [Vitis vinifera])

HSP 1 Score: 224.6 bits (571), Expect = 1.4e-55
Identity = 123/192 (64.06%), Postives = 141/192 (73.44%), Query Frame = 1 

Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           M RPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAACRPQNDF-----SVAS 120
           TNFPY+ + S+SSSS+LLSATLTAKLHRCYMASLQLTKQS     +P         S+A 
Sbjct: 61  TNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQLTKQSLHEPQKPPTSHVATTTSIAG 120

Query: 121 GI------------APVQRVEADTTTAKKVKLESVDCGEPLMIEMLDEDHIQQMIEELLD 176
            +              VQ+ EA+    KKV+++S         + L++DHIQQMIEELLD
Sbjct: 121 KVGESGQWSPEKRPVTVQQPEAN-WVVKKVQVDS----NTQQFKPLEDDHIQQMIEELLD 180

[Close]
BLAST of Cla022353 vs. NCBI nr
Match: gi|567916622|ref|XP_006450317.1| (hypothetical protein CICLE_v10009593mg [Citrus clementina])

HSP 1 Score: 224.6 bits (571), Expect = 1.4e-55
Identity = 126/198 (63.64%), Postives = 143/198 (72.22%), Query Frame = 1 

Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           M RPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAACRPQ----NDFSVASG 120
           TNFPY+ + S SSSS+LLSATLTAKLHRCYMASLQ+TK  SSAA  PQ    +  S  SG
Sbjct: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTK--SSAANEPQKAPASHVSTPSG 120

Query: 121 IA--------------PVQRVEADTTTAKKVKLESVDCGEPLMIEMLDEDHIQQMIEELL 180
            A              P+Q   +     + VK E V+  +    + L++DHI+QMIEELL
Sbjct: 121 NATRVNEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQ--QFKPLEDDHIEQMIEELL 180

The following BLAST results are available for this feature:
BLAST of Cla022353 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ERF03_ARATH7.1e-5562.64Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF00... [more]
PZ02_LUPPO1.1e-4459.17Protein PPLZ02 OS=Lupinus polyphyllus GN=PPLZ02 PE=2 SV=1[more]
WIN1_ARATH1.1e-2641.75Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE... [more]
SHN2_ARATH8.4e-2441.94Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2... [more]
SHN3_ARATH1.4e-2343.41Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3... [more]
BLAST of Cla022353 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSL8_CUCSA8.6e-8491.43Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382540 PE=4 SV=1[more]
V4UBY1_9ROSI1.0e-5563.64Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009593mg PE=4 SV=1[more]
A0A067FJG7_CITSI1.0e-5563.64Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029507mg PE=4 SV=1[more]
F6H3U5_VITVI1.0e-5564.06Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g06000 PE=4 SV=... [more]
A0A059CSI0_EUCGR2.9e-5563.98Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02719 PE=4 SV=1[more]
BLAST of Cla022353 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659088962|ref|XP_008445253.1|2.5e-8492.57PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis melo][more]
gi|449441876|ref|XP_004138708.1|1.2e-8391.43PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis sativus... [more]
gi|568859853|ref|XP_006483447.1|1.4e-5563.64PREDICTED: ethylene-responsive transcription factor ERF003 [Citrus sinensis][more]
gi|225430392|ref|XP_002285373.1|1.4e-5564.06PREDICTED: protein PPLZ02 [Vitis vinifera][more]
gi|567916622|ref|XP_006450317.1|1.4e-5563.64hypothetical protein CICLE_v10009593mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001471AP2/ERF_dom
IPR016177DNA-bd_dom_sf
IPR017392AP2/ERF-transcript_factor
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006412 translation
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003735 structural constituent of ribosome
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU06142watermelon EST collection version 2.0transcribed_cluster
WMU52947watermelon EST collection version 2.0transcribed_cluster
WMU65292watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla022353Cla022353.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU52947WMU52947transcribed_cluster
WMU65292WMU65292transcribed_cluster
WMU06142WMU06142transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 8..19
score: 9.2E-11coord: 30..46
score: 9.2
IPR001471AP2/ERF domainGENE3DG3DSA:3.30.730.10coord: 7..64
score: 8.6
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 7..56
score: 6.3
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 7..70
score: 2.0
IPR001471AP2/ERF domainPROFILEPS51032AP2_ERFcoord: 7..64
score: 20
IPR016177DNA-binding domainunknownSSF54171DNA-binding domaincoord: 7..66
score: 1.05
IPR017392AP2/ERF transcription factor ERF/PTI6PANTHERPTHR31194SHN SHINE , DNA BINDING / TRANSCRIPTION FACTORcoord: 1..171
score: 7.4
NoneNo IPR availablePANTHERPTHR31194:SF4ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003coord: 1..171
score: 7.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla022353Cla97C07G139210Watermelon (97103) v2wmwmbB099
Cla022353Cla97C08G157010Watermelon (97103) v2wmwmbB100
Cla022353Csa2G382540Cucumber (Chinese Long) v2cuwmB107
Cla022353Csa7G432080Cucumber (Chinese Long) v2cuwmB579
Cla022353Csa4G652640Cucumber (Chinese Long) v2cuwmB300
Cla022353Csa4G006210Cucumber (Chinese Long) v2cuwmB299
Cla022353MELO3C011287Melon (DHL92) v3.5.1mewmB307
Cla022353MELO3C023458Melon (DHL92) v3.5.1mewmB220
Cla022353MELO3C016980Melon (DHL92) v3.5.1mewmB499
Cla022353ClCG05G016530Watermelon (Charleston Gray)wcgwmB277
Cla022353ClCG08G013610Watermelon (Charleston Gray)wcgwmB400
Cla022353ClCG07G012410Watermelon (Charleston Gray)wcgwmB360
Cla022353CSPI02G23810Wild cucumber (PI 183967)cpiwmB112
Cla022353CSPI04G26430Wild cucumber (PI 183967)cpiwmB302
Cla022353Cucsa.162710Cucumber (Gy14) v1cgywmB289
Cla022353Cucsa.271720Cucumber (Gy14) v1cgywmB496
Cla022353CmaCh05G003570Cucurbita maxima (Rimu)cmawmB753
Cla022353CmaCh01G014790Cucurbita maxima (Rimu)cmawmB425
Cla022353CmaCh12G003560Cucurbita maxima (Rimu)cmawmB148
Cla022353CmoCh01G015350Cucurbita moschata (Rifu)cmowmB418
Cla022353CmoCh12G003080Cucurbita moschata (Rifu)cmowmB134
Cla022353CmoCh05G003610Cucurbita moschata (Rifu)cmowmB748
Cla022353Lsi04G020910Bottle gourd (USVL1VR-Ls)lsiwmB294
Cla022353Lsi07G004380Bottle gourd (USVL1VR-Ls)lsiwmB432
Cla022353Lsi08G012340Bottle gourd (USVL1VR-Ls)lsiwmB465
Cla022353Cp4.1LG02g15190Cucurbita pepo (Zucchini)cpewmB545
Cla022353Cp4.1LG11g03060Cucurbita pepo (Zucchini)cpewmB101
Cla022353Cp4.1LG12g07360Cucurbita pepo (Zucchini)cpewmB142
Cla022353Cp4.1LG02g04070Cucurbita pepo (Zucchini)cpewmB543
Cla022353CsGy2G023540Cucumber (Gy14) v2cgybwmB105
Cla022353CsGy4G024790Cucumber (Gy14) v2cgybwmB278
Cla022353MELO3C017860.2Melon (DHL92) v3.6.1medwmB489
Cla022353MELO3C011287.2Melon (DHL92) v3.6.1medwmB300
Cla022353MELO3C016980.2Melon (DHL92) v3.6.1medwmB485
Cla022353Carg03947Silver-seed gourdcarwmB0978
Cla022353Carg09356Silver-seed gourdcarwmB0133
Cla022353Carg00429Silver-seed gourdcarwmB0661
Cla022353CsaV3_2G032360Cucumber (Chinese Long) v3cucwmB121
Cla022353CsaV3_4G036780Cucumber (Chinese Long) v3cucwmB312
Cla022353CsaV3_7G031980Cucumber (Chinese Long) v3cucwmB606
Cla022353Bhi04G000026Wax gourdwgowmB298
Cla022353Bhi09G002453Wax gourdwgowmB596
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla022353Cla021006Watermelon (97103) v1wmwmB062
The following block(s) are covering this gene:
GeneOrganismBlock
Cla022353Silver-seed gourdcarwmB0189
Cla022353Silver-seed gourdcarwmB0629
Cla022353Cucumber (Chinese Long) v3cucwmB311
Cla022353Watermelon (97103) v2wmwmbB096
Cla022353Watermelon (97103) v1wmwmB058
Cla022353Cucumber (Gy14) v1cgywmB116
Cla022353Cucurbita maxima (Rimu)cmawmB021
Cla022353Cucurbita moschata (Rifu)cmowmB014
Cla022353Wild cucumber (PI 183967)cpiwmB301
Cla022353Melon (DHL92) v3.5.1mewmB502
Cla022353Cucurbita pepo (Zucchini)cpewmB760
Cla022353Cucurbita pepo (Zucchini)cpewmB782