Cla022076 (gene) Watermelon (97103) v1

Overview
NameCla022076
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionAuxin response factor 17 (AHRD V1 ***- D9HNU4_MAIZE); contains Interpro domain(s) IPR003340 Transcriptional factor B3
LocationChr8 : 20138936 .. 20139805 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGACCCGAATCTTTGGCGTGCTTTTGCCGGCAATTCTGCCCATATCCACACTGTCGGTTCTGAGGTTTACTATTTCGTTCAAGGACATGTCGAACAAGCTACTTACGTTCCGACACTTTCTCGGTCTGTTATTGCTAACCCTACTACTAAATGTATCATTACTTCTGCTGATTATAGTGCCGATTCTCTTTCTGATGAGGTCTGCCTTAAGTTGAATCTTAATCCAATTCGTCCTGGTGAGAGTGGGTCTGAACTGGTTTCTGGATTTGGTTGTTCTGATGAAGGTAGTGGGAAGAGGAATAGAATTGAGAAGTTTGCTAAGATTCTTACGTCTTCTGATGCTAATAATGGCGGTGGATTTTCTGTGCCGCGGTACTGTGCGGATTCTATTTTTCCTCCGTTGAATTATCAGGTTGAACCGCCGGTGCAGACTTTGTCGATTACTGATGTTCATGGAGTTGTTTGGAATTTTCGTCACATTTACCGTGGGACGCCGAGGCGGCATTTGCTTACTACTGGGTGGAGTAAATTTGTGAATCATAAGAAGCTGGTTGCGGGTGATGCCGTCATTTTCGCTAGGAATTCCAGTGGGGATATGTTTGTTGGCATTCGTCGCGTCACAAGCACAAGGGCTATTATAGGCGGTGATTGCAGCAGATGGAATATCCAGATTGGTGGTGGAGGAGGAAGGTGCAATGTGGAGGAGAAACGTTCTGGAGATGGAGGAAATGATAATTTCTCCCGGAGTAATATTGGGAAGGTGCCGGCTGAGGCGGTTGCTAACGCTGCGGAATTGTCCGCCCAATTTAAGCCGTTTGAGGTGGTTTATTATCCCAGGGCTGGTTTGTCCGAATTTGCCTGCTGA

mRNA sequence

ATGATGGACCCGAATCTTTGGCGTGCTTTTGCCGGCAATTCTGCCCATATCCACACTGTCGGTTCTGAGGTTTACTATTTCGTTCAAGGACATGTCGAACAAGCTACTTACGTTCCGACACTTTCTCGGTCTGTTATTGCTAACCCTACTACTAAATGTATCATTACTTCTGCTGATTATAGTGCCGATTCTCTTTCTGATGAGGTCTGCCTTAAGTTGAATCTTAATCCAATTCGTCCTGGTGAGAGTGGGTCTGAACTGGTTTCTGGATTTGGTTGTTCTGATGAAGGTAGTGGGAAGAGGAATAGAATTGAGAAGTTTGCTAAGATTCTTACGTCTTCTGATGCTAATAATGGCGGTGGATTTTCTGTGCCGCGGTACTGTGCGGATTCTATTTTTCCTCCGTTGAATTATCAGGTTGAACCGCCGGTGCAGACTTTGTCGATTACTGATGTTCATGGAGTTGTTTGGAATTTTCGTCACATTTACCGTGGGACGCCGAGGCGGCATTTGCTTACTACTGGGTGGAGTAAATTTGTGAATCATAAGAAGCTGGTTGCGGGTGATGCCGTCATTTTCGCTAGGAATTCCAGTGGGGATATGTTTGTTGGCATTCGTCGCGTCACAAGCACAAGGGCTATTATAGGCGGTGATTGCAGCAGATGGAATATCCAGATTGGTGGTGGAGGAGGAAGGTGCAATGTGGAGGAGAAACGTTCTGGAGATGGAGGAAATGATAATTTCTCCCGGAGTAATATTGGGAAGGTGCCGGCTGAGGCGGTTGCTAACGCTGCGGAATTGTCCGCCCAATTTAAGCCGTTTGAGGTGGTTTATTATCCCAGGGCTGGTTTGTCCGAATTTGCCTGCTGA

Coding sequence (CDS)

ATGATGGACCCGAATCTTTGGCGTGCTTTTGCCGGCAATTCTGCCCATATCCACACTGTCGGTTCTGAGGTTTACTATTTCGTTCAAGGACATGTCGAACAAGCTACTTACGTTCCGACACTTTCTCGGTCTGTTATTGCTAACCCTACTACTAAATGTATCATTACTTCTGCTGATTATAGTGCCGATTCTCTTTCTGATGAGGTCTGCCTTAAGTTGAATCTTAATCCAATTCGTCCTGGTGAGAGTGGGTCTGAACTGGTTTCTGGATTTGGTTGTTCTGATGAAGGTAGTGGGAAGAGGAATAGAATTGAGAAGTTTGCTAAGATTCTTACGTCTTCTGATGCTAATAATGGCGGTGGATTTTCTGTGCCGCGGTACTGTGCGGATTCTATTTTTCCTCCGTTGAATTATCAGGTTGAACCGCCGGTGCAGACTTTGTCGATTACTGATGTTCATGGAGTTGTTTGGAATTTTCGTCACATTTACCGTGGGACGCCGAGGCGGCATTTGCTTACTACTGGGTGGAGTAAATTTGTGAATCATAAGAAGCTGGTTGCGGGTGATGCCGTCATTTTCGCTAGGAATTCCAGTGGGGATATGTTTGTTGGCATTCGTCGCGTCACAAGCACAAGGGCTATTATAGGCGGTGATTGCAGCAGATGGAATATCCAGATTGGTGGTGGAGGAGGAAGGTGCAATGTGGAGGAGAAACGTTCTGGAGATGGAGGAAATGATAATTTCTCCCGGAGTAATATTGGGAAGGTGCCGGCTGAGGCGGTTGCTAACGCTGCGGAATTGTCCGCCCAATTTAAGCCGTTTGAGGTGGTTTATTATCCCAGGGCTGGTTTGTCCGAATTTGCCTGCTGA

Protein sequence

MMDPNLWRAFAGNSAHIHTVGSEVYYFVQGHVEQATYVPTLSRSVIANPTTKCIITSADYSADSLSDEVCLKLNLNPIRPGESGSELVSGFGCSDEGSGKRNRIEKFAKILTSSDANNGGGFSVPRYCADSIFPPLNYQVEPPVQTLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDAVIFARNSSGDMFVGIRRVTSTRAIIGGDCSRWNIQIGGGGGRCNVEEKRSGDGGNDNFSRSNIGKVPAEAVANAAELSAQFKPFEVVYYPRAGLSEFAC
Homology
[Close]
BLAST of Cla022076 vs. Swiss-Prot
Match: ARFQ_ARATH (Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 4.6e-72
Identity = 146/286 (51.05%), Postives = 180/286 (62.94%), Query Frame = 1 

Query: 2   MDPNLWRAFAGNSAHIHTVGSEVYYFVQGHVEQATYVPTLSRSVIANPTTKCIITSADYS 61
           +DP +WRA AG S  I  + S VYYF QGHVE     P LS    +     CIITS    
Sbjct: 16  VDPTIWRACAGASVQIPVLHSRVYYFPQGHVEHCC--PLLSTLPSSTSPVPCIITSIQLL 75

Query: 62  ADSLSDEVCLKLNLNPIRPGESGSELVSGFGCSDEGSGKRNRIEKFAKILTSSDANNGGG 121
           AD ++DEV   L L P+   +      S FG  D      N++  FAKILT SDANNGGG
Sbjct: 76  ADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVDDNNKVTTFAKILTPSDANNGGG 135

Query: 122 FSVPRYCADSIFPPLNYQVEPPVQTLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVN 181
           FSVPR+CADS+FP LN+Q++PPVQ L +TD+HG VW+FRHIYRGTPRRHLLTTGWSKFVN
Sbjct: 136 FSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLLTTGWSKFVN 195

Query: 182 HKKLVAGDAVIFARNSSGDMFVGIRRVTSTRAIIGGDCSRWNIQIGGGGGRCNVEEKRSG 241
            KKL+AGD+V+F R S+ +MF+G+RR T   +  GG       +  G   + +V ++  G
Sbjct: 196 SKKLIAGDSVVFMRKSADEMFIGVRR-TPISSSDGGSSYYGGDEYNGYYSQSSVAKEDDG 255

Query: 242 DGGNDNFSRSNIGKVPAEAVANAAELSAQFKPFEVVYYPRAGLSEF 288
                 F RS  GK+ AEAV +A   ++Q  PFEVV+YP AG SEF
Sbjct: 256 -SPKKTFRRSGNGKLTAEAVTDAINRASQGLPFEVVFYPAAGWSEF 297

[Close]
BLAST of Cla022076 vs. Swiss-Prot
Match: ARFP_ARATH (Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 3.2e-65
Identity = 146/294 (49.66%), Postives = 178/294 (60.54%), Query Frame = 1 

Query: 2   MDPNLWRAFAGNSAHIHTVGSEVYYFVQGHVEQATYVPTLSRSVIANPTTKCIITSADYS 61
           +DP LW A AG    +  + S+V+YF QGH E A          I  P   C + +  Y 
Sbjct: 16  LDPQLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCVDFGNLPIP-PMVLCRVLAIKYM 75

Query: 62  ADSLSDEVCLKLNLNPIRPGESGSELVSGFGCSDEGSGKRNRIEK---FAKILTSSDANN 121
           AD+ SDEV  KL L P++  E    +   +G  ++ +G  +  EK   FAK LT SDANN
Sbjct: 76  ADAESDEVFAKLRLIPLKDDE---YVDHEYGDGEDSNGFESNSEKTPSFAKTLTQSDANN 135

Query: 122 GGGFSVPRYCADSIFPPLNYQVEPPVQTLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSK 181
           GGGFSVPRYCA++IFP L+Y  EPPVQT+   DVHG VW FRHIYRGTPRRHLLTTGWS 
Sbjct: 136 GGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTPRRHLLTTGWSN 195

Query: 182 FVNHKKLVAGDAVIFARNSSGDMFVGIRRVTSTRAIIGGD---CSRWNIQIGGGGGRCN- 241
           FVN KKLVAGD+++F R  +GD+ VGIRR  + R  IG      + WN  IGG  G  + 
Sbjct: 196 FVNQKKLVAGDSIVFMRAENGDLCVGIRR--AKRGGIGNGPEYSAGWN-PIGGSCGYSSL 255

Query: 242 VEEKRSGDGGNDNFSRSN-IGKVPAEAVANAAELSAQFKPFEVVYYPRAGLSEF 288
           + E  S      N S ++  GKV AE+V  AA L+   +PFEVVYYPRA  SEF
Sbjct: 256 LREDESNSLRRSNCSLADRKGKVTAESVIEAATLAISGRPFEVVYYPRASTSEF 302

[Close]
BLAST of Cla022076 vs. Swiss-Prot
Match: ARFV_ORYSJ (Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22 PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.8e-63
Identity = 142/303 (46.86%), Postives = 170/303 (56.11%), Query Frame = 1 

Query: 2   MDPNLWRAFAGNSAHIHTVGSEVYYFVQGHVEQATYVPTLSRSVIA------NPTTKCII 61
           +DP LW A AG    +    S VYYF QGH E A      + +          P   C +
Sbjct: 13  LDPQLWHACAGGMVQMPAPRSRVYYFAQGHAEHADGGGGAAAAAAELGPRALPPLVLCRV 72

Query: 62  TSADYSADSLSDEVCLKLNLNPIRPGESG----SELVSGFGCSDEGSGKRNRIEKFAKIL 121
               + AD  SDEV  K+ L P+ PGE+      EL       D       +   FAK L
Sbjct: 73  EGVQFLADRDSDEVYAKIRLAPVAPGEAEFREPDELCPLGAAGDAAEPSPEKPTSFAKTL 132

Query: 122 TSSDANNGGGFSVPRYCADSIFPPLNYQVEPPVQTLSITDVHGVVWNFRHIYRGTPRRHL 181
           T SDANNGGGFSVPRYCA++IFP L+Y+ +PPVQT+   DVHGVVW FRHIYRGTPRRHL
Sbjct: 133 TQSDANNGGGFSVPRYCAETIFPKLDYRADPPVQTVLAKDVHGVVWKFRHIYRGTPRRHL 192

Query: 182 LTTGWSKFVNHKKLVAGDAVIFARNSSGDMFVGIRRVTSTRAIIGG-DC-SRWNIQ-IGG 241
           LTTGWS FVN KKLVAGD+++F R   G++ VGIRR  + R   GG +C S WN    GG
Sbjct: 193 LTTGWSTFVNQKKLVAGDSIVFLRTRHGELCVGIRR--AKRMACGGMECMSGWNAPGYGG 252

Query: 242 GGGRCNVEEKRS----GDGGNDNFSRSNIGKVPAEAVANAAELSAQFKPFEVVYYPRAGL 288
           GG    ++E+ S    G GG         GKV    V  AA L++  +PFEV YYPRA  
Sbjct: 253 GGFSAFLKEEESKLMKGHGGGGYMKGK--GKVRMADVVEAASLASSGQPFEVAYYPRAST 311

[Close]
BLAST of Cla022076 vs. Swiss-Prot
Match: ARFJ_ORYSJ (Auxin response factor 10 OS=Oryza sativa subsp. japonica GN=ARF10 PE=2 SV=3)

HSP 1 Score: 243.0 bits (619), Expect = 3.9e-63
Identity = 132/288 (45.83%), Postives = 171/288 (59.38%), Query Frame = 1 

Query: 2   MDPNLWRAFAGNSAHIHTVGSEVYYFVQGHVEQATYVPTLSRSVIANPTTKCIITSADYS 61
           +D  LW A AG+ + +  VG+ VYYF QGH EQA+    LS + +  P   C + +  + 
Sbjct: 19  VDSQLWAACAGSMSSVPPVGAAVYYFPQGHAEQASAAVDLSSARVP-PLVPCRVVAVRFM 78

Query: 62  ADSLSDEVCLKLNLNPIRPGESGSEL--VSGFGCSDEGSGKRNRIEKFAKILTSSDANNG 121
           AD+ SDEV  K+ L P+RPG++  ++   +      E    R R   FAK LT SDANNG
Sbjct: 79  ADAESDEVFAKIRLVPLRPGDAVVDVGEAAAAEARREEENSRPRPTSFAKTLTQSDANNG 138

Query: 122 GGFSVPRYCADSIFPPLNYQVEPPVQTLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSKF 181
           GGFSVPR+CA++IFP L+Y  EPPVQ++   DVHGV W FRHIYRGTPRRHLLTTGWS F
Sbjct: 139 GGFSVPRFCAETIFPELDYSSEPPVQSVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPF 198

Query: 182 VNHKKLVAGDAVIFARNSSGDMFVGIRRVTSTRAIIGGDCSRWNIQIGGGGGRCNVEEKR 241
           VN K+L AGD+++F R+  G++ VG+RR       IGGD    ++    G  +     +R
Sbjct: 199 VNKKQLTAGDSIVFMRDEGGNIHVGLRRAKRGFCSIGGDDE--SLSSIPGWDQYRGLMRR 258

Query: 242 SGDGGNDNFSRSNIGKVPAEAVANAAELSAQFKPFEVVYYPRAGLSEF 288
           +             GKVP E V  AA  +   +PFEV+YYPRA   EF
Sbjct: 259 NATATATGGRTPPKGKVPPENVLTAATRATTGQPFEVLYYPRASTPEF 303

[Close]
BLAST of Cla022076 vs. Swiss-Prot
Match: ARFJ_ORYSI (Auxin response factor 10 OS=Oryza sativa subsp. indica GN=ARF10 PE=3 SV=2)

HSP 1 Score: 243.0 bits (619), Expect = 3.9e-63
Identity = 132/288 (45.83%), Postives = 171/288 (59.38%), Query Frame = 1 

Query: 2   MDPNLWRAFAGNSAHIHTVGSEVYYFVQGHVEQATYVPTLSRSVIANPTTKCIITSADYS 61
           +D  LW A AG+ + +  VG+ VYYF QGH EQA+    LS + +  P   C + +  + 
Sbjct: 19  VDSQLWAACAGSMSSVPPVGAAVYYFPQGHAEQASAAVDLSSARVP-PLVPCRVVAVRFM 78

Query: 62  ADSLSDEVCLKLNLNPIRPGESGSEL--VSGFGCSDEGSGKRNRIEKFAKILTSSDANNG 121
           AD+ SDEV  K+ L P+RPG++  ++   +      E    R R   FAK LT SDANNG
Sbjct: 79  ADAESDEVFAKIRLVPLRPGDAVVDVGEAAAAEARREEENSRPRPTSFAKTLTQSDANNG 138

Query: 122 GGFSVPRYCADSIFPPLNYQVEPPVQTLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSKF 181
           GGFSVPR+CA++IFP L+Y  EPPVQ++   DVHGV W FRHIYRGTPRRHLLTTGWS F
Sbjct: 139 GGFSVPRFCAETIFPELDYSSEPPVQSVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPF 198

Query: 182 VNHKKLVAGDAVIFARNSSGDMFVGIRRVTSTRAIIGGDCSRWNIQIGGGGGRCNVEEKR 241
           VN K+L AGD+++F R+  G++ VG+RR       IGGD    ++    G  +     +R
Sbjct: 199 VNKKQLTAGDSIVFMRDEGGNIHVGLRRAKRGFCSIGGDDE--SLSSIPGWDQYRGLMRR 258

Query: 242 SGDGGNDNFSRSNIGKVPAEAVANAAELSAQFKPFEVVYYPRAGLSEF 288
           +             GKVP E V  AA  +   +PFEV+YYPRA   EF
Sbjct: 259 NATATATGGRTPPKGKVPPENVLTAATRATTGQPFEVLYYPRASTPEF 303

[Close]
BLAST of Cla022076 vs. TrEMBL
Match: A0A0A0LJV3_CUCSA (Auxin response factor OS=Cucumis sativus GN=Csa_2G315390 PE=3 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 2.9e-134
Identity = 233/287 (81.18%), Postives = 263/287 (91.64%), Query Frame = 1 

Query: 1   MMDPNLWRAFAGNSAHIHTVGSEVYYFVQGHVEQATYVPTLSRSVIANPTTKCIITSADY 60
           MMDPNLWRAF+GNSAHIHTVGSEVYYFVQGH+EQATYVPTLSRSV++NP TKCI+++ADY
Sbjct: 1   MMDPNLWRAFSGNSAHIHTVGSEVYYFVQGHLEQATYVPTLSRSVLSNPITKCIVSAADY 60

Query: 61  SADSLSDEVCLKLNLNPIRPGESGSELVSGFGCSDEGSGKRNRIEKFAKILTSSDANNGG 120
           +AD LSDEVCLKLNLNPI PG+S S++V  F   D+G+G+RNRIEKFAK+LTSSDANNGG
Sbjct: 61  TADPLSDEVCLKLNLNPIPPGQSVSQVVHPFSSCDDGNGQRNRIEKFAKVLTSSDANNGG 120

Query: 121 GFSVPRYCADSIFPPLNYQVEPPVQTLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFV 180
           GFSVPR+CADSIFPPLNYQVEPPVQTL+ITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFV
Sbjct: 121 GFSVPRFCADSIFPPLNYQVEPPVQTLAITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFV 180

Query: 181 NHKKLVAGDAVIFARNSSGDMFVGIRRVTSTRAIIGGDCSRWNIQIGGGGGRCNVEEKRS 240
           N+KKL+AGDAVIFAR+SS D+FVGIRR  S+++  GGDCS+WN Q+ GGGGRCNVEEKRS
Sbjct: 181 NNKKLIAGDAVIFARDSSRDIFVGIRR--SSKSSGGGDCSKWNSQV-GGGGRCNVEEKRS 240

Query: 241 GDGGNDNFSRSNIGKVPAEAVANAAELSAQFKPFEVVYYPRAGLSEF 288
           GD   D F+R+NIGKVPAE VA AAEL+A+FKPFEVVYYPR G SEF
Sbjct: 241 GDRSTDVFTRTNIGKVPAETVATAAELAAEFKPFEVVYYPRIGTSEF 284

[Close]
BLAST of Cla022076 vs. TrEMBL
Match: A0A067KCM5_JATCU (Auxin response factor OS=Jatropha curcas GN=JCGZ_12025 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 2.9e-81
Identity = 163/290 (56.21%), Postives = 200/290 (68.97%), Query Frame = 1 

Query: 1   MMDPNLWRAFAGNSAHIHTVGSEVYYFVQGHVEQAT------YVPTLSRSVIANPTTKCI 60
           ++DP +WRA AG+S  I  V S VYYF QGH+EQ++      ++  L+RS    P   C 
Sbjct: 12  LVDPRIWRACAGSSVQIPIVNSRVYYFPQGHLEQSSSSASPSFLSALARS---KPLIACQ 71

Query: 61  ITSADYSADSLSDEVCLKLNLNPIRPGESGS-ELVSGFGCSDEGSGKRNRIEKFAKILTS 120
           ++   + AD ++DEV  KL L PI P  + S  LV   G    G    ++I  FAKILT 
Sbjct: 72  VSGVQFLADPVTDEVYTKLFLFPIDPSFNHSLPLVEPAG-HQGGDDNEDKIVAFAKILTP 131

Query: 121 SDANNGGGFSVPRYCADSIFPPLNYQVEPPVQTLSITDVHGVVWNFRHIYRGTPRRHLLT 180
           SDANNGGGFSVPR+CADSIFPPLNYQ EPPVQTL++TD+HG+ W+FRHIYRGTPRRHLLT
Sbjct: 132 SDANNGGGFSVPRFCADSIFPPLNYQAEPPVQTLTVTDIHGITWDFRHIYRGTPRRHLLT 191

Query: 181 TGWSKFVNHKKLVAGDAVIFARNSSGDMFVGIRRVTSTRAIIGGDCSRWNIQIGGGGGRC 240
           TGWSKFVNHKKL+AGD+V+F RN +G+MF+G+RR  + R   GGDC+RW  QIG G G  
Sbjct: 192 TGWSKFVNHKKLIAGDSVVFMRNLAGEMFIGVRR--AVRFNNGGDCARWREQIGRGTGDV 251

Query: 241 NVEEKRSGDGGNDNFSRSNIGKVPAEAVANAAELSAQFKPFEVVYYPRAG 284
            ++ K  G      FSRS  G+V  EAV  A E +AQ  PFEVVYYPRAG
Sbjct: 252 KMKVKEEG------FSRSGRGRVSPEAVMEAVERAAQGLPFEVVYYPRAG 289

[Close]
BLAST of Cla022076 vs. TrEMBL
Match: B9H788_POPTR (Auxin response factor OS=Populus trichocarpa GN=POPTR_0005s16320g PE=3 SV=2)

HSP 1 Score: 300.1 bits (767), Expect = 3.0e-78
Identity = 155/293 (52.90%), Postives = 197/293 (67.24%), Query Frame = 1 

Query: 2   MDPNLWRAFAGNSAHIHTVGSEVYYFVQGHVEQ-----ATYVPTLSRSVIANPTTKCIIT 61
           +DP +WRA AG+S  I T+ S VYYF QGH+EQ     A + P LS   ++ P   C I+
Sbjct: 10  VDPRIWRACAGSSVQIPTINSRVYYFPQGHLEQSSSSTAPHPPFLSNLALSKPLISCQIS 69

Query: 62  SADYSADSLSDEVCLKLNLNPIRPGESGSELVSGFGCSDEGSG------KRNRIEKFAKI 121
           + D+ AD ++DEV ++L L P+        L        EG G        N+I  FAKI
Sbjct: 70  AVDFLADPVTDEVFIRLLLLPLNNHSCNLPLSFLEPSRSEGGGVNDVDDDENKILAFAKI 129

Query: 122 LTSSDANNGGGFSVPRYCADSIFPPLNYQVEPPVQTLSITDVHGVVWNFRHIYRGTPRRH 181
           LT SDANNGGGFSVPR+CADSIFPPLNYQ EPPVQTL++TD+HG+ W+FRHIYRGTPRRH
Sbjct: 130 LTPSDANNGGGFSVPRFCADSIFPPLNYQAEPPVQTLTVTDIHGISWDFRHIYRGTPRRH 189

Query: 182 LLTTGWSKFVNHKKLVAGDAVIFARNSSGDMFVGIRRVTSTRAIIGGDCSRWNIQIGGGG 241
           LLTTGWSKFVN+KKL+AGD+V+F RN  G+MF+G+R     RA+   + +RW  QI GGG
Sbjct: 190 LLTTGWSKFVNNKKLIAGDSVVFMRNLKGEMFIGVR-----RAVRLNNSARWREQIAGGG 249

Query: 242 GRCNVEEKRSGDGGNDNFSRSNIGKVPAEAVANAAELSAQFKPFEVVYYPRAG 284
           G   V+ +       + FS S  G++  EAVA A E++A+  PF+VVYYPRAG
Sbjct: 250 GEGKVKVE-------EGFSMSGRGRLSQEAVAEAVEMAAKGLPFDVVYYPRAG 290

[Close]
BLAST of Cla022076 vs. TrEMBL
Match: B9RJC5_RICCO (Auxin response factor OS=Ricinus communis GN=RCOM_1033160 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 2.8e-76
Identity = 155/296 (52.36%), Postives = 194/296 (65.54%), Query Frame = 1 

Query: 2   MDPNLWRAFAGNSAHIHTVGSEVYYFVQGHVEQATYVPT------LSRSVIANPTTKCII 61
           +D  +WRA AG+S  I T+ S VYYF QGH+EQ++   +      LS   ++ P   C I
Sbjct: 14  VDRRIWRACAGSSVQIPTINSRVYYFPQGHLEQSSNSSSIVSSCILSSIALSKPVIPCQI 73

Query: 62  TSADYSADSLSDEVCLKLNLNPIRPGESGSELVSGFGCSDEGSG-----KRNRIEKFAKI 121
           ++  + AD ++DEV  KL L PI        ++   G  ++  G       ++I  FAKI
Sbjct: 74  SAVQFLADPVTDEVYTKLLLFPIDSFNPSVPVLEHSGNLEQHHGYDYDDDEDKIVAFAKI 133

Query: 122 LTSSDANNGGGFSVPRYCADSIFPPLNYQVEPPVQTLSITDVHGVVWNFRHIYRGTPRRH 181
           LT SDANNGGGFSVPR+CADSIFPPLNY  EPPVQTL++TD+HG+ W+FRHIYRGTPRRH
Sbjct: 134 LTPSDANNGGGFSVPRFCADSIFPPLNYHAEPPVQTLTVTDIHGITWDFRHIYRGTPRRH 193

Query: 182 LLTTGWSKFVNHKKLVAGDAVIFARNSSGDMFVGIRRVTSTRAIIGGDCSRWNIQI---G 241
           LLTTGWSKFVNHKKL+AGD+V+F RN +G MF+G+RR        G DC+RW  QI   G
Sbjct: 194 LLTTGWSKFVNHKKLIAGDSVVFMRNMTGKMFIGVRRAVRPNN-GGSDCARWREQIACFG 253

Query: 242 GGGGRCNVEEKRSGDGGNDNFSRSNIGKVPAEAVANAAELSAQFKPFEVVYYPRAG 284
           GGGG   ++ K  G      +SR+  GKV  EAV  A E +AQ   FEVVYYPRAG
Sbjct: 254 GGGGDVKMKVKEEG------YSRNGRGKVSPEAVMEAVERAAQGFSFEVVYYPRAG 302

[Close]
BLAST of Cla022076 vs. TrEMBL
Match: M5XYJ1_PRUPE (Auxin response factor OS=Prunus persica GN=PRUPE_ppa003136mg PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 2.4e-75
Identity = 155/289 (53.63%), Postives = 195/289 (67.47%), Query Frame = 1 

Query: 2   MDPNLWRAFAGNSAHIHTVGSEVYYFVQGHVEQATYVPTLSRS--VIANPTTKCIITSAD 61
           +DP +WRA AGNS  I  + S VYYF QGH+EQ++    L  S  V++ P   C I++  
Sbjct: 24  IDPKIWRACAGNSVQIPILHSRVYYFPQGHLEQSSSSAPLLLSPLVLSKPLILCRISAVH 83

Query: 62  YSADSLSDEVCLKLNLNPIRPGESGSELVSGFGCSDEGSGKRNRIEKFAKILTSSDANNG 121
           + AD  +DEV  KL L PI   E  +          + + + +++  FAKILT SDANNG
Sbjct: 84  FLADPTTDEVFAKLLLLPIPNHEPTNRHEPPNDDVFDDADETDKVVSFAKILTPSDANNG 143

Query: 122 GGFSVPRYCADSIFPPLNYQVEPPVQTLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSKF 181
           GGFSVPR+CADSIFP LNYQ EPPVQTLS+TD+HG+VW+FRHIYRGTPRRHLLTTGWSKF
Sbjct: 144 GGFSVPRFCADSIFPALNYQAEPPVQTLSVTDLHGIVWDFRHIYRGTPRRHLLTTGWSKF 203

Query: 182 VNHKKLVAGDAVIFARNSSGDMFVGIRRVTSTRAIIGGDC-SRWNIQIGGGGGRCNVEEK 241
           VNHK LVAGD+V+F RNS G+MFVG+RR  + R+ +  DC SRW+  IGGG       + 
Sbjct: 204 VNHKMLVAGDSVVFMRNSRGEMFVGVRR--AVRSTVSSDCASRWSSPIGGGATTTMRLKT 263

Query: 242 RSGDGGNDNFSRSNIGKVPAEAVANAAELSAQFKPFEVVYYPRAGLSEF 288
              +G       S    + AEAV  AAE++A  +PFEVVYYP+AG S+F
Sbjct: 264 EDQEG-------SGRKVMSAEAVVGAAEMAAAGRPFEVVYYPKAGWSDF 303

[Close]
BLAST of Cla022076 vs. NCBI nr
Match: gi|659089165|ref|XP_008445361.1| (PREDICTED: auxin response factor 17 [Cucumis melo])

HSP 1 Score: 492.3 bits (1266), Expect = 5.9e-136
Identity = 235/286 (82.17%), Postives = 264/286 (92.31%), Query Frame = 1 

Query: 2   MDPNLWRAFAGNSAHIHTVGSEVYYFVQGHVEQATYVPTLSRSVIANPTTKCIITSADYS 61
           MDPNLWRAF+GNSAHIHTVGSEVYYFVQGH+EQATYVPTLSRSV++NPTTKCI+++ADY+
Sbjct: 1   MDPNLWRAFSGNSAHIHTVGSEVYYFVQGHLEQATYVPTLSRSVLSNPTTKCIVSAADYT 60

Query: 62  ADSLSDEVCLKLNLNPIRPGESGSELVSGFGCSDEGSGKRNRIEKFAKILTSSDANNGGG 121
           AD L+DEVCLK NLNPI PG+S S++V  F   D+G+G+RNRIEKFAK+LTSSDANNGGG
Sbjct: 61  ADPLTDEVCLKFNLNPIPPGQSVSQVVHPFSGGDDGNGQRNRIEKFAKVLTSSDANNGGG 120

Query: 122 FSVPRYCADSIFPPLNYQVEPPVQTLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVN 181
           FSVPRYCADSIFPPLNYQVEPPVQTL+ITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVN
Sbjct: 121 FSVPRYCADSIFPPLNYQVEPPVQTLAITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVN 180

Query: 182 HKKLVAGDAVIFARNSSGDMFVGIRRVTSTRAIIGGDCSRWNIQIGGGGGRCNVEEKRSG 241
           HKKL+AGDAVIFARNS+GDMFVGIRR  S+++I GGDCS+WN Q+ GGGGRCNVEEKRSG
Sbjct: 181 HKKLIAGDAVIFARNSNGDMFVGIRR--SSKSIGGGDCSKWNSQV-GGGGRCNVEEKRSG 240

Query: 242 DGGNDNFSRSNIGKVPAEAVANAAELSAQFKPFEVVYYPRAGLSEF 288
           D     F+R+NIGKVPAE VA+AAEL+A+FKPFEVVYYPR G SEF
Sbjct: 241 DRSPAVFTRTNIGKVPAETVAHAAELAAEFKPFEVVYYPRTGTSEF 283

[Close]
BLAST of Cla022076 vs. NCBI nr
Match: gi|449466452|ref|XP_004150940.1| (PREDICTED: auxin response factor 17 [Cucumis sativus])

HSP 1 Score: 486.1 bits (1250), Expect = 4.2e-134
Identity = 233/287 (81.18%), Postives = 263/287 (91.64%), Query Frame = 1 

Query: 1   MMDPNLWRAFAGNSAHIHTVGSEVYYFVQGHVEQATYVPTLSRSVIANPTTKCIITSADY 60
           MMDPNLWRAF+GNSAHIHTVGSEVYYFVQGH+EQATYVPTLSRSV++NP TKCI+++ADY
Sbjct: 1   MMDPNLWRAFSGNSAHIHTVGSEVYYFVQGHLEQATYVPTLSRSVLSNPITKCIVSAADY 60

Query: 61  SADSLSDEVCLKLNLNPIRPGESGSELVSGFGCSDEGSGKRNRIEKFAKILTSSDANNGG 120
           +AD LSDEVCLKLNLNPI PG+S S++V  F   D+G+G+RNRIEKFAK+LTSSDANNGG
Sbjct: 61  TADPLSDEVCLKLNLNPIPPGQSVSQVVHPFSSCDDGNGQRNRIEKFAKVLTSSDANNGG 120

Query: 121 GFSVPRYCADSIFPPLNYQVEPPVQTLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFV 180
           GFSVPR+CADSIFPPLNYQVEPPVQTL+ITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFV
Sbjct: 121 GFSVPRFCADSIFPPLNYQVEPPVQTLAITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFV 180

Query: 181 NHKKLVAGDAVIFARNSSGDMFVGIRRVTSTRAIIGGDCSRWNIQIGGGGGRCNVEEKRS 240
           N+KKL+AGDAVIFAR+SS D+FVGIRR  S+++  GGDCS+WN Q+ GGGGRCNVEEKRS
Sbjct: 181 NNKKLIAGDAVIFARDSSRDIFVGIRR--SSKSSGGGDCSKWNSQV-GGGGRCNVEEKRS 240

Query: 241 GDGGNDNFSRSNIGKVPAEAVANAAELSAQFKPFEVVYYPRAGLSEF 288
           GD   D F+R+NIGKVPAE VA AAEL+A+FKPFEVVYYPR G SEF
Sbjct: 241 GDRSTDVFTRTNIGKVPAETVATAAELAAEFKPFEVVYYPRIGTSEF 284

[Close]
BLAST of Cla022076 vs. NCBI nr
Match: gi|1009136571|ref|XP_015885595.1| (PREDICTED: auxin response factor 17 [Ziziphus jujuba])

HSP 1 Score: 312.4 bits (799), Expect = 8.4e-82
Identity = 172/311 (55.31%), Postives = 204/311 (65.59%), Query Frame = 1 

Query: 2   MDPNLWRAFAGNSAHIHTVGSEVYYFVQGHVEQAT--YVPTLSRSVIANPTTKCIITSAD 61
           +DP +WRA AG+S  I  V S VYYF QGH+EQ++    P LS  V++ P   C I +  
Sbjct: 11  IDPKIWRACAGSSVQIPAVDSRVYYFPQGHLEQSSSSLPPLLSPLVLSKPLILCRIAAVQ 70

Query: 62  YSADSLSDEVCLKLNLNPIRPGESGSELVSGFGC----SDEGSG---------------- 121
           + AD  +DEV  KL L+PI P  S     SG G       EG G                
Sbjct: 71  FLADPHTDEVFAKLVLHPINPQLSALFRSSGHGRLQTQDGEGGGGAGGDEDDDDEEEGEE 130

Query: 122 ---KRNRIEKFAKILTSSDANNGGGFSVPRYCADSIFPPLNYQVEPPVQTLSITDVHGVV 181
              + +++  FAKILT SDANNGGGFSVPR+CADSIFPPLNYQ EPPVQTLS+TDVHGVV
Sbjct: 131 QGQEEDKVVSFAKILTPSDANNGGGFSVPRFCADSIFPPLNYQAEPPVQTLSVTDVHGVV 190

Query: 182 WNFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDAVIFARNSSGDMFVGIRRVTSTRAIIG 241
           W+FRHIYRGTPRRHLLTTGWSKFVN+KKLVAGD+V+F RN   +MFVG+RR   + +   
Sbjct: 191 WDFRHIYRGTPRRHLLTTGWSKFVNYKKLVAGDSVVFMRNLRREMFVGVRRAVRSSS-SN 250

Query: 242 GDCSRWNIQIGGGGGRCNVEEKRSGDGGNDNFSRSNIGKVPAEAVANAAELSAQFKPFEV 288
           GDCSRW+ Q GG       EE  + DGG    SRS  G++  EAVA AAEL+AQ  PFEV
Sbjct: 251 GDCSRWSSQFGGTMRVKAEEESCNRDGG---MSRSGRGRLSVEAVAEAAELAAQGLPFEV 310

[Close]
BLAST of Cla022076 vs. NCBI nr
Match: gi|720090341|ref|XP_010245064.1| (PREDICTED: auxin response factor 17-like [Nelumbo nucifera])

HSP 1 Score: 310.5 bits (794), Expect = 3.2e-81
Identity = 156/290 (53.79%), Postives = 196/290 (67.59%), Query Frame = 1 

Query: 2   MDPNLWRAFAGNSAHIHTVGSEVYYFVQGHVEQATYVPTLSRSVIANPTTKCIITSADYS 61
           +DP +W+A AGNS  I TVGS VYYF QGH EQA+  P  S          C I S  + 
Sbjct: 12  LDPYIWKACAGNSVEIPTVGSTVYYFPQGHAEQASSSPDFSSLACVRHMVLCRIVSVMFL 71

Query: 62  ADSLSDEVCLKLNLNPIRPGESGS----ELVSGFGCSDEGSGKRNRIEKFAKILTSSDAN 121
           A+  +DEV  K+ L P+    SG      + +G     +      +I  F+KILT SDAN
Sbjct: 72  ANPDTDEVFAKIRLEPLDRSFSGMVRMPPVAAGLSQDGDVEDSEEKILSFSKILTPSDAN 131

Query: 122 NGGGFSVPRYCADSIFPPLNYQVEPPVQTLSITDVHGVVWNFRHIYRGTPRRHLLTTGWS 181
           NGGGFSVPR+CADSIFPPLNY+ EPPVQT+++TDVHGV+W+FRHIYRGTPRRHLLTTGWS
Sbjct: 132 NGGGFSVPRFCADSIFPPLNYKAEPPVQTITVTDVHGVMWDFRHIYRGTPRRHLLTTGWS 191

Query: 182 KFVNHKKLVAGDAVIFARNSSGDMFVGIRRVTSTRAIIGGDCSRWNIQIGGGGGRCNVEE 241
           KFVNHKKLVAGD+V+F +N +G++FVG+RR  + R+    DC RWN  +G       + +
Sbjct: 192 KFVNHKKLVAGDSVVFMKNQTGELFVGVRR--TARSSGSMDCVRWNYHVGSVAS--PIVK 251

Query: 242 KRSGDGGNDNFSRSNIGKVPAEAVANAAELSAQFKPFEVVYYPRAGLSEF 288
              G G  + FSRS+ G+VPAE+V  AAEL+   +PFEVVYYPRAG  +F
Sbjct: 252 MEEGFGSGEGFSRSSRGRVPAESVVEAAELAGVNRPFEVVYYPRAGSPDF 297

[Close]
BLAST of Cla022076 vs. NCBI nr
Match: gi|802634737|ref|XP_012078139.1| (PREDICTED: auxin response factor 17 [Jatropha curcas])

HSP 1 Score: 310.1 bits (793), Expect = 4.2e-81
Identity = 163/290 (56.21%), Postives = 200/290 (68.97%), Query Frame = 1 

Query: 1   MMDPNLWRAFAGNSAHIHTVGSEVYYFVQGHVEQAT------YVPTLSRSVIANPTTKCI 60
           ++DP +WRA AG+S  I  V S VYYF QGH+EQ++      ++  L+RS    P   C 
Sbjct: 12  LVDPRIWRACAGSSVQIPIVNSRVYYFPQGHLEQSSSSASPSFLSALARS---KPLIACQ 71

Query: 61  ITSADYSADSLSDEVCLKLNLNPIRPGESGS-ELVSGFGCSDEGSGKRNRIEKFAKILTS 120
           ++   + AD ++DEV  KL L PI P  + S  LV   G    G    ++I  FAKILT 
Sbjct: 72  VSGVQFLADPVTDEVYTKLFLFPIDPSFNHSLPLVEPAG-HQGGDDNEDKIVAFAKILTP 131

Query: 121 SDANNGGGFSVPRYCADSIFPPLNYQVEPPVQTLSITDVHGVVWNFRHIYRGTPRRHLLT 180
           SDANNGGGFSVPR+CADSIFPPLNYQ EPPVQTL++TD+HG+ W+FRHIYRGTPRRHLLT
Sbjct: 132 SDANNGGGFSVPRFCADSIFPPLNYQAEPPVQTLTVTDIHGITWDFRHIYRGTPRRHLLT 191

Query: 181 TGWSKFVNHKKLVAGDAVIFARNSSGDMFVGIRRVTSTRAIIGGDCSRWNIQIGGGGGRC 240
           TGWSKFVNHKKL+AGD+V+F RN +G+MF+G+RR  + R   GGDC+RW  QIG G G  
Sbjct: 192 TGWSKFVNHKKLIAGDSVVFMRNLAGEMFIGVRR--AVRFNNGGDCARWREQIGRGTGDV 251

Query: 241 NVEEKRSGDGGNDNFSRSNIGKVPAEAVANAAELSAQFKPFEVVYYPRAG 284
            ++ K  G      FSRS  G+V  EAV  A E +AQ  PFEVVYYPRAG
Sbjct: 252 KMKVKEEG------FSRSGRGRVSPEAVMEAVERAAQGLPFEVVYYPRAG 289

The following BLAST results are available for this feature:
BLAST of Cla022076 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ARFQ_ARATH4.6e-7251.05Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1[more]
ARFP_ARATH3.2e-6549.66Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1[more]
ARFV_ORYSJ1.8e-6346.86Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22 PE=2 SV=1[more]
ARFJ_ORYSJ3.9e-6345.83Auxin response factor 10 OS=Oryza sativa subsp. japonica GN=ARF10 PE=2 SV=3[more]
ARFJ_ORYSI3.9e-6345.83Auxin response factor 10 OS=Oryza sativa subsp. indica GN=ARF10 PE=3 SV=2[more]
BLAST of Cla022076 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJV3_CUCSA2.9e-13481.18Auxin response factor OS=Cucumis sativus GN=Csa_2G315390 PE=3 SV=1[more]
A0A067KCM5_JATCU2.9e-8156.21Auxin response factor OS=Jatropha curcas GN=JCGZ_12025 PE=3 SV=1[more]
B9H788_POPTR3.0e-7852.90Auxin response factor OS=Populus trichocarpa GN=POPTR_0005s16320g PE=3 SV=2[more]
B9RJC5_RICCO2.8e-7652.36Auxin response factor OS=Ricinus communis GN=RCOM_1033160 PE=3 SV=1[more]
M5XYJ1_PRUPE2.4e-7553.63Auxin response factor OS=Prunus persica GN=PRUPE_ppa003136mg PE=3 SV=1[more]
BLAST of Cla022076 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659089165|ref|XP_008445361.1|5.9e-13682.17PREDICTED: auxin response factor 17 [Cucumis melo][more]
gi|449466452|ref|XP_004150940.1|4.2e-13481.18PREDICTED: auxin response factor 17 [Cucumis sativus][more]
gi|1009136571|ref|XP_015885595.1|8.4e-8255.31PREDICTED: auxin response factor 17 [Ziziphus jujuba][more]
gi|720090341|ref|XP_010245064.1|3.2e-8153.79PREDICTED: auxin response factor 17-like [Nelumbo nucifera][more]
gi|802634737|ref|XP_012078139.1|4.2e-8156.21PREDICTED: auxin response factor 17 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003340B3_DNA-bd
IPR015300DNA-bd_pseudobarrel_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048856 anatomical structure development
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0007275 multicellular organism development
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla022076Cla022076.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003340B3 DNA binding domainPFAMPF02362B3coord: 107..208
score: 5.1
IPR003340B3 DNA binding domainSMARTSM01019B3_2coord: 107..209
score: 3.5
IPR003340B3 DNA binding domainPROFILEPS50863B3coord: 107..209
score: 1
IPR015300DNA-binding pseudobarrel domainGENE3DG3DSA:2.40.330.10coord: 102..209
score: 2.2
IPR015300DNA-binding pseudobarrel domainunknownSSF101936DNA-binding pseudobarrel domaincoord: 102..209
score: 9.03
NoneNo IPR availablePANTHERPTHR31384FAMILY NOT NAMEDcoord: 1..221
score: 5.2E-116coord: 253..287
score: 5.2E
NoneNo IPR availablePANTHERPTHR31384:SF19AUXIN RESPONSE FACTOR 17coord: 253..287
score: 5.2E-116coord: 1..221
score: 5.2E