Cla021827 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021827
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	DNA binding protein (AHRD V1 ***- E5GC38_CUCME)
Location	Chr5 : 6655666 .. 6657083 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTAAGGGATGAGTTATTTTGTGAGCCTGTCGATTGTCCCTGTTTTTGTTTAATCTTCACTACTTTGATATTGGATGTCCCAGATTTCTGACTATAATTCAGCGAAGTCTGATTTTGGAACCGAGCTGGCTATTAGTACAAGAACAGAGCTTGATCCAGGTACATGTCCCATTATCCTTCAGTATTAATATGCGTTGTTATTGGTTAATTTGCATACCATAGGCAAAGTAATACACAAACTCCTTTTATAATATTGTTTAATCGTAGTTATCAATTCCATTTTTGCTTTGATAGCTGCATGGTGGCTACAACATGGAATCAGTTGCTTAGAACTGCAACAAATAGCTGTTCGCATACTGAGTCAGACATGTTCATCTTTGTGTTGTGAACACGACTGGACTCCATTTGCTAAGGAACACAGTCAAAGGCATAATACTTTGTCTCAGAGAAAAATGGCCGATTTGTTGTATGTTCACTACAACCTGCGACTTCGAGAACGCCAACTAAGAAAGCAATCTAATGAGTCTATTTCTCTTGATCATATTCTTATGGAACACTTATTGGATGATTGGATTGTGGAACCCCAGAAACAAGGCATGCAAGAAGATGAGGTATGTGGTCATACTGTCTTTTGTTCCAATGAACTGCATTCCACAAACTCCATGTAGTGGAATACATGTCTTCTGTCTTCCAAATGTCAGGTTTTTTTTTTTTTTTTTTTTAATGTGAGGCTAAACTCAAAAAGTTACAGGATATCTCCAAATATCTACAGCCTATGCCACCAGATTACCCATTGGGTTTGAGTATTAAATTTAAAAATCATTAGTTTGAAAACCCGAATAGATATAGTTCTTGGATATATGTGGTTTGACAGATGACAAGAAAAATTTGGGAAAGATGTTCTAGAATAGTTGAGTGAGTTTCACTGTTTAAAAAGTGTGCACCTTATCAAGAACGCTCATCAGAAGAAGCCCTTGCTTTTAAAGACACGGGTGAGTCTCATACAAGATATGGAAGATGGATGATTGTTAGATTAGTTAGTTTAGTAACAAGTCGTCGTTGCTACATAAAGATTGTCTCAGTTCCATGGTAAATGTGATTTGTAATACATAGCCTGTGGTATGAAGTTCCAATATAATTGTCCTTTTATTATGTACTCTAGCATCTTCTGGAGTTGAAAATTCATACTTGCATATCTCTCAGGAAATCCATTGTCCTGGAATGGAGCCACTTGATGCATATGAGAATGATTTGATTGACTATGAGGATGGGACTTCAGAGGGCCGGAAGGGTTGCCTTCAACTGGTTGGTTTGACTGATGTAGACACATTGGATGTCAATCCCGCCAACGGAGGCGCTTCCACAGACAATGATGCTGATGTTAAGTTCTATGACAATGAGCTAAGTGACTAA

mRNA sequence

ATGCAGGAAATCCATTGTCCTGGAATGGAGCCACTTGATGCATATGAGAATGATTTGATTGACTATGAGGATGGGACTTCAGAGGGCCGGAAGGGTTGCCTTCAACTGGTTGGTTTGACTGATGTAGACACATTGGATGTCAATCCCGCCAACGGAGGCGCTTCCACAGACAATGATGCTGATGTTAAGTTCTATGACAATGAGCTAAGTGACTAA

Coding sequence (CDS)

ATGCAGGAAATCCATTGTCCTGGAATGGAGCCACTTGATGCATATGAGAATGATTTGATTGACTATGAGGATGGGACTTCAGAGGGCCGGAAGGGTTGCCTTCAACTGGTTGGTTTGACTGATGTAGACACATTGGATGTCAATCCCGCCAACGGAGGCGCTTCCACAGACAATGATGCTGATGTTAAGTTCTATGACAATGAGCTAAGTGACTAA

Protein sequence

MQEIHCPGMEPLDAYENDLIDYEDGTSEGRKGCLQLVGLTDVDTLDVNPANGGASTDNDADVKFYDNELSD

Homology

[Close]

BLAST of Cla021827 vs. TrEMBL
Match: A0A0A0L859_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171120 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.0e-32
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 2   QEIHCPGMEPLDAYENDLIDYEDGTSEGRKGCLQLVGLTDVDTLDVNPANGGASTDNDAD 61
           +EI CPGMEPLDAYENDLIDYEDGTSEGRKGCLQLVGLTDVDTLDVNPANGGASTDNDAD
Sbjct: 831 EEILCPGMEPLDAYENDLIDYEDGTSEGRKGCLQLVGLTDVDTLDVNPANGGASTDNDAD 890

Query: 62  VKFYDNELSD 72
           VKFYDNELSD
Sbjct: 891 VKFYDNELSD 900

[Close]

BLAST of Cla021827 vs. TrEMBL
Match: E5GC38_CUCME (DNA binding protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.3e-31
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 2   QEIHCPGMEPLDAYENDLIDYEDGTSEGRKGCLQLVGLTDVDTLDVNPANGGASTDNDAD 61
           +EI CPGMEPLDAYENDLIDYEDG+S+GRKGCLQLVGLTD+DTLDVNPANGGASTDNDAD
Sbjct: 831 EEILCPGMEPLDAYENDLIDYEDGSSDGRKGCLQLVGLTDIDTLDVNPANGGASTDNDAD 890

Query: 62  VKFYDNELSD 72
           VKFYDNELSD
Sbjct: 891 VKFYDNELSD 900

[Close]

BLAST of Cla021827 vs. TrEMBL
Match: D7T690_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00790 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-11
Identity = 37/71 (52.11%), Postives = 53/71 (74.65%), Query Frame = 1


Query: 2   QEIHCPGMEPLDAYENDLIDYEDGTSEGRKGCLQLVGLTDVDTLD-VNPANGGASTDNDA 61
           +EI    M+  DAYENDL++YEDGT++GRK  L++V L+ V+ LD VNPA+ G +TD+D 
Sbjct: 836 EEIPYNEMDHTDAYENDLMEYEDGTADGRKASLEMVTLSSVEPLDIVNPASAGVATDDDT 895

Query: 62  DVKFYDNELSD 72
           D+ F  ++LSD
Sbjct: 896 DLNFLGDDLSD 906

[Close]

BLAST of Cla021827 vs. TrEMBL
Match: A0A103XZL3_CYNCS (Ribonuclease H-like domain-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_022026 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-08
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1


Query: 6   CPGMEPLDAYENDLIDYEDGTSEGRKGCLQLVGLTDVDTLDVNPANGGASTDNDADVKFY 65
           C  ME  DAYEN L++YE+G  E RKG LQL+ LTD++ LD +P N     D D D +  
Sbjct: 413 CSEMEQGDAYENGLLEYEEGNGESRKGSLQLMTLTDIEPLDAHPLNNIGGDDEDEDDEGD 472

Query: 66  DNELS 71
           D++L+
Sbjct: 473 DDDLN 477

[Close]

BLAST of Cla021827 vs. TrEMBL
Match: B9S003_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1003620 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-08
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1


Query: 16  ENDLIDYEDGTSEGRKGCLQLVGLTDVDTLDVNPANGGASTDNDADVK-----FYDNELS 72
           E+DLIDY+D   E +KG L+LV + DV+ LDVNPANGG +T++D D +     F+D+ LS
Sbjct: 846 EDDLIDYDDAILEPQKGSLELVTMADVEQLDVNPANGGGTTEDDDDEEEDDHNFFDDNLS 905

[Close]

BLAST of Cla021827 vs. NCBI nr
Match: gi|778679159|ref|XP_011651096.1| (PREDICTED: uncharacterized protein LOC101213851 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 5.7e-32
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 2   QEIHCPGMEPLDAYENDLIDYEDGTSEGRKGCLQLVGLTDVDTLDVNPANGGASTDNDAD 61
           +EI CPGMEPLDAYENDLIDYEDGTSEGRKGCLQLVGLTDVDTLDVNPANGGASTDNDAD
Sbjct: 831 EEILCPGMEPLDAYENDLIDYEDGTSEGRKGCLQLVGLTDVDTLDVNPANGGASTDNDAD 890

Query: 62  VKFYDNELSD 72
           VKFYDNELSD
Sbjct: 891 VKFYDNELSD 900

[Close]

BLAST of Cla021827 vs. NCBI nr
Match: gi|659077032|ref|XP_008438995.1| (PREDICTED: uncharacterized protein LOC103483923 [Cucumis melo])

HSP 1 Score: 141.7 bits (356), Expect = 4.8e-31
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 2   QEIHCPGMEPLDAYENDLIDYEDGTSEGRKGCLQLVGLTDVDTLDVNPANGGASTDNDAD 61
           +EI CPGMEPLDAYENDLIDYEDG+S+GRKGCLQLVGLTD+DTLDVNPANGGASTDNDAD
Sbjct: 831 EEILCPGMEPLDAYENDLIDYEDGSSDGRKGCLQLVGLTDIDTLDVNPANGGASTDNDAD 890

Query: 62  VKFYDNELSD 72
           VKFYDNELSD
Sbjct: 891 VKFYDNELSD 900

[Close]

BLAST of Cla021827 vs. NCBI nr
Match: gi|731388638|ref|XP_002274968.2| (PREDICTED: uncharacterized protein LOC100247647 [Vitis vinifera])

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-11
Identity = 37/71 (52.11%), Postives = 53/71 (74.65%), Query Frame = 1


Query: 2   QEIHCPGMEPLDAYENDLIDYEDGTSEGRKGCLQLVGLTDVDTLD-VNPANGGASTDNDA 61
           +EI    M+  DAYENDL++YEDGT++GRK  L++V L+ V+ LD VNPA+ G +TD+D 
Sbjct: 836 EEIPYNEMDHTDAYENDLMEYEDGTADGRKASLEMVTLSSVEPLDIVNPASAGVATDDDT 895

Query: 62  DVKFYDNELSD 72
           D+ F  ++LSD
Sbjct: 896 DLNFLGDDLSD 906

[Close]

BLAST of Cla021827 vs. NCBI nr
Match: gi|1009163694|ref|XP_015900101.1| (PREDICTED: uncharacterized protein LOC107433329 [Ziziphus jujuba])

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-10
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 1


Query: 2   QEIHCPGMEPLDAYENDLIDYEDGTSEGRKGCLQLVGLTDVDTLDVNPANGGASTDNDAD 61
           +EIHC  ME ++ YEN +IDYEDG+ E RK  ++ V L DV   +VN AN G  +D+DAD
Sbjct: 830 EEIHCNEMEQVETYENAMIDYEDGSIETRKVSVEEVTLGDV---NVNAANAGVDSDDDAD 889

Query: 62  VKFYDNELSD 72
           + F+++E+SD
Sbjct: 890 INFFEDEMSD 896

[Close]

BLAST of Cla021827 vs. NCBI nr
Match: gi|1009163745|ref|XP_015900126.1| (PREDICTED: uncharacterized protein LOC107433354, partial [Ziziphus jujuba])

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-10
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 1


Query: 2   QEIHCPGMEPLDAYENDLIDYEDGTSEGRKGCLQLVGLTDVDTLDVNPANGGASTDNDAD 61
           +EIHC  ME ++ YEN +IDYEDG+ E RK  ++ V L DV   +VN AN G  +D+DAD
Sbjct: 389 EEIHCNEMEQVETYENAMIDYEDGSIETRKVSVEEVTLGDV---NVNAANAGVDSDDDAD 448

Query: 62  VKFYDNELSD 72
           + F+++E+SD
Sbjct: 449 INFFEDEMSD 455

The following BLAST results are available for this feature:

BLAST of Cla021827 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L859_CUCSA	4.0e-32	97.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171120 PE=4 SV=1	[more]
E5GC38_CUCME	3.3e-31	92.86	DNA binding protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
D7T690_VITVI	1.0e-11	52.11	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00790 PE=4 SV=...	[more]
A0A103XZL3_CYNCS	3.0e-08	47.69	Ribonuclease H-like domain-containing protein OS=Cynara cardunculus var. scolymu...	[more]
B9S003_RICCO	3.0e-08	52.46	DNA binding protein, putative OS=Ricinus communis GN=RCOM_1003620 PE=4 SV=1	[more]

BLAST of Cla021827 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778679159\|ref\|XP_011651096.1\|	5.7e-32	97.14	PREDICTED: uncharacterized protein LOC101213851 [Cucumis sativus]	[more]
gi\|659077032\|ref\|XP_008438995.1\|	4.8e-31	92.86	PREDICTED: uncharacterized protein LOC103483923 [Cucumis melo]	[more]
gi\|731388638\|ref\|XP_002274968.2\|	1.5e-11	52.11	PREDICTED: uncharacterized protein LOC100247647 [Vitis vinifera]	[more]
gi\|1009163694\|ref\|XP_015900101.1\|	2.1e-10	50.00	PREDICTED: uncharacterized protein LOC107433329 [Ziziphus jujuba]	[more]
gi\|1009163745\|ref\|XP_015900126.1\|	2.1e-10	50.00	PREDICTED: uncharacterized protein LOC107433354, partial [Ziziphus jujuba]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016874	ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021827	Cla021827.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021827	Cla97C05G088490	Watermelon (97103) v2	wmwmbB206
Cla021827	Csa3G171120	Cucumber (Chinese Long) v2	cuwmB233
Cla021827	MELO3C006750	Melon (DHL92) v3.5.1	mewmB461
Cla021827	ClCG05G006860	Watermelon (Charleston Gray)	wcgwmB286
Cla021827	CSPI03G15340	Wild cucumber (PI 183967)	cpiwmB231
Cla021827	Cucsa.252180	Cucumber (Gy14) v1	cgywmB479
Cla021827	CmaCh14G015590	Cucurbita maxima (Rimu)	cmawmB242
Cla021827	CmoCh14G015930	Cucurbita moschata (Rifu)	cmowmB231
Cla021827	Lsi05G013870	Bottle gourd (USVL1VR-Ls)	lsiwmB366
Cla021827	Cp4.1LG03g12160	Cucurbita pepo (Zucchini)	cpewmB613
Cla021827	CsGy3G015420	Cucumber (Gy14) v2	cgybwmB217
Cla021827	MELO3C006750.2	Melon (DHL92) v3.6.1	medwmB447
Cla021827	Carg19595	Silver-seed gourd	carwmB0269
Cla021827	CsaV3_3G015520	Cucumber (Chinese Long) v3	cucwmB239
Cla021827	Bhi01G000817	Wax gourd	wgowmB201

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021827	Silver-seed gourd	carwmB0070
Cla021827	Silver-seed gourd	carwmB0738
Cla021827	Watermelon (97103) v2	wmwmbB217
Cla021827	Wax gourd	wgowmB067
Cla021827	Cucurbita maxima (Rimu)	cmawmB798
Cla021827	Cucurbita moschata (Rifu)	cmowmB341
Cla021827	Cucurbita moschata (Rifu)	cmowmB793
Cla021827	Watermelon (Charleston Gray)	wcgwmB332
Cla021827	Cucurbita pepo (Zucchini)	cpewmB152
Cla021827	Cucurbita pepo (Zucchini)	cpewmB845
Cla021827	Melon (DHL92) v3.6.1	medwmB094