Cla021817 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021817
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ycf2 (AHRD V1 ***- A6Y9V5_CERJA)
Location	Chr5 : 6563812 .. 6564327 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTACCCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTATTGGGATCCTCTCGAACAGAAAAAGATTGCAGTCAATTTGATAATGATCGAGTGACCTTGCTTCTTTGGCCCGAACCCAGAAATCCCTTAGATATAATACAAAATGGATCTTGTTCTATCGTTGATCAGAGATTTCTCTATGAACAATACGAATCGGAGTTTGAAGAAGGGGAAGGAGAAGGAGCCCTCAACCCACAACAGATAGAGGAGGATTTATTTAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATATCCCGAGCAACACTTCAAGTTCTCCTTGCTCAAGCCAACAAGATTTTGA

mRNA sequence

ATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTACCCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTATTGGGATCCTCTCGAACAGAAAAAGATTGCAGTCAATTTGATAATGATCGAGTGACCTTGCTTCTTTGGCCCGAACCCAGAAATCCCTTAGATATAATACAAAATGGATCTTGTTCTATCGTTGATCAGAGATTTCTCTATGAACAATACGAATCGGAGTTTGAAGAAGGGGAAGGAGAAGGAGCCCTCAACCCACAACAGATAGAGGAGGATTTATTTAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATATCCCGAGCAACACTTCAAGTTCTCCTTGCTCAAGCCAACAAGATTTTGA

Coding sequence (CDS)

ATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTACCCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTATTGGGATCCTCTCGAACAGAAAAAGATTGCAGTCAATTTGATAATGATCGAGTGACCTTGCTTCTTTGGCCCGAACCCAGAAATCCCTTAGATATAATACAAAATGGATCTTGTTCTATCGTTGATCAGAGATTTCTCTATGAACAATACGAATCGGAGTTTGAAGAAGGGGAAGGAGAAGGAGCCCTCAACCCACAACAGATAGAGGAGGATTTATTTAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATATCCCGAGCAACACTTCAAGTTCTCCTTGCTCAAGCCAACAAGATTTTGA

Protein sequence

MKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQRFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNEYPEQHFKFSLLKPTRF

Homology

[Close]

BLAST of Cla021817 vs. Swiss-Prot
Match: YCF2_VITVI (Protein Ycf2 OS=Vitis vinifera GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.0e-82
Identity = 146/155 (94.19%), Postives = 149/155 (96.13%), Query Frame = 1


Query: 1    MKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGS 60
            MKKLTILLYLLSCSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GS
Sbjct: 1962 MKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGS 2021

Query: 61   SRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQRFLYEQYESEFEEGEGEGAL 120
            SRTEKDCSQFDNDRVTLLL PEPRNPLD++QNGSCSIVDQRFLYE+YESEFEEG GEGAL
Sbjct: 2022 SRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGAGEGAL 2081

Query: 121  NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 156
            +PQQIEEDLFNHIVWAPRIWRPWGFLFDCIER NE
Sbjct: 2082 DPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERTNE 2116

[Close]

BLAST of Cla021817 vs. Swiss-Prot
Match: YCF2_COFAR (Protein Ycf2 OS=Coffea arabica GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 4.9e-82
Identity = 144/155 (92.90%), Postives = 150/155 (96.77%), Query Frame = 1


Query: 1    MKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGS 60
            MKKLTILLYLLSCSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GS
Sbjct: 1943 MKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGS 2002

Query: 61   SRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQRFLYEQYESEFEEGEGEGAL 120
            SRTEKDCSQFDNDRVTLLL PEPRNPLD++Q+GSCSI+DQRFLYE+YESEFEEGEGEGAL
Sbjct: 2003 SRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQSGSCSILDQRFLYEKYESEFEEGEGEGAL 2062

Query: 121  NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 156
            +PQQIEEDLFN+IVWAPRIWRPW FLFDCIERPNE
Sbjct: 2063 DPQQIEEDLFNYIVWAPRIWRPWAFLFDCIERPNE 2097

[Close]

BLAST of Cla021817 vs. Swiss-Prot
Match: YCF2_PANGI (Protein Ycf2 OS=Panax ginseng GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 4.9e-82
Identity = 145/155 (93.55%), Postives = 149/155 (96.13%), Query Frame = 1


Query: 1    MKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGS 60
            MKKLTILLYLLSCSAGSV QDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGAL+GS
Sbjct: 1756 MKKLTILLYLLSCSAGSVAQDLWSLPRPDEKNGITSYGLVENDSDLVHGLLEVEGALVGS 1815

Query: 61   SRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQRFLYEQYESEFEEGEGEGAL 120
            SRTEKDCSQFDNDRVTLLL PEPRNPLD++QNGSCSI+DQRFLYE+ ESEFEEGEGEGAL
Sbjct: 1816 SRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSILDQRFLYEKNESEFEEGEGEGAL 1875

Query: 121  NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 156
            +PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Sbjct: 1876 DPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 1910

[Close]

BLAST of Cla021817 vs. Swiss-Prot
Match: YCF2_CITSI (Protein Ycf2 OS=Citrus sinensis GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.1e-81
Identity = 144/155 (92.90%), Postives = 148/155 (95.48%), Query Frame = 1


Query: 1    MKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGS 60
            MKKLTILLYLLSCSAGSV QDLWSLPGPDEKNGITS GLVENDSDLVHGLLEVEGAL+GS
Sbjct: 1944 MKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSSGLVENDSDLVHGLLEVEGALVGS 2003

Query: 61   SRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQRFLYEQYESEFEEGEGEGAL 120
            SRTEKDCS+FDNDRVTLLL PEPRNPLD++Q GSCSIVDQRFLYE+YESEFEEGEGEG L
Sbjct: 2004 SRTEKDCSRFDNDRVTLLLRPEPRNPLDMMQKGSCSIVDQRFLYEKYESEFEEGEGEGVL 2063

Query: 121  NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 156
            +PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Sbjct: 2064 DPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 2098

[Close]

BLAST of Cla021817 vs. Swiss-Prot
Match: YCF2_CARPA (Protein Ycf2 OS=Carica papaya GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 1.9e-81
Identity = 144/155 (92.90%), Postives = 147/155 (94.84%), Query Frame = 1


Query: 1    MKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGS 60
            MKKLTILLYLLSCSAGSV QDLWSLPGPDEKNGITSYG VENDSDLVHGLLEVEGAL+GS
Sbjct: 1960 MKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGFVENDSDLVHGLLEVEGALVGS 2019

Query: 61   SRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQRFLYEQYESEFEEGEGEGAL 120
            SRTEKDCSQFDNDRVTLLL  EPRNPL ++QNGSCSIVDQRFLYE+YESEFEEGEGEG L
Sbjct: 2020 SRTEKDCSQFDNDRVTLLLRSEPRNPLYMMQNGSCSIVDQRFLYEKYESEFEEGEGEGVL 2079

Query: 121  NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 156
            +PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Sbjct: 2080 DPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 2114

[Close]

BLAST of Cla021817 vs. TrEMBL
Match: G0YE19_9MAGN (Protein Ycf2 OS=Aextoxicon punctatum GN=ycf2 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 7.0e-83
Identity = 149/155 (96.13%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1    MKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGS 60
            MKKLTILLYLLSCSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GS
Sbjct: 1962 MKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGS 2021

Query: 61   SRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQRFLYEQYESEFEEGEGEGAL 120
            SRTEKDCSQFDNDRVTLLL PEPRNPLD++QNGSCSIVDQRFLYE+YESEFEEGEGEGAL
Sbjct: 2022 SRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGEGEGAL 2081

Query: 121  NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 156
            NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Sbjct: 2082 NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 2116

[Close]

BLAST of Cla021817 vs. TrEMBL
Match: D3WDB4_9MAGN (Protein Ycf2 OS=Berberidopsis corallina GN=ycf2 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 7.0e-83
Identity = 149/155 (96.13%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1    MKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGS 60
            MKKLTILLYLLSCSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GS
Sbjct: 1960 MKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGS 2019

Query: 61   SRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQRFLYEQYESEFEEGEGEGAL 120
            SRTEKDCSQFDNDRVTLLL PEPRNPLD++QNGSCSIVDQRFLYE+YESEFEEGEGEGAL
Sbjct: 2020 SRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGEGEGAL 2079

Query: 121  NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 156
            NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Sbjct: 2080 NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 2114

[Close]

BLAST of Cla021817 vs. TrEMBL
Match: A6Y9W3_9MAGN (Protein Ycf2 OS=Daphniphyllum sp. 205-82 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.6e-82
Identity = 148/155 (95.48%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1    MKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGS 60
            MKKLTILLYLLSCSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GS
Sbjct: 1965 MKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGS 2024

Query: 61   SRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQRFLYEQYESEFEEGEGEGAL 120
            SRTEKDCSQFDNDRVTLLL PEPRNPLD++QNGSCSIVDQRFLYE+YESEFEEGEGEGAL
Sbjct: 2025 SRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGEGEGAL 2084

Query: 121  NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 156
            +PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Sbjct: 2085 DPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 2119

[Close]

BLAST of Cla021817 vs. TrEMBL
Match: A6Y9V5_CERJA (Protein Ycf2 OS=Cercidiphyllum japonicum GN=ycf2 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.6e-82
Identity = 148/155 (95.48%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1    MKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGS 60
            MKKLTILLYLLSCSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GS
Sbjct: 1957 MKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGS 2016

Query: 61   SRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQRFLYEQYESEFEEGEGEGAL 120
            SRTEKDCSQFDNDRVTLLL PEPRNPLD++QNGSCSIVDQRFLYE+YESEFEEGEGEGAL
Sbjct: 2017 SRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGEGEGAL 2076

Query: 121  NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 156
            +PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Sbjct: 2077 DPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 2111

[Close]

BLAST of Cla021817 vs. TrEMBL
Match: V9NYF4_9ROSI (Protein Ycf2 OS=Melianthus villosus GN=ycf2 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.4e-82
Identity = 146/155 (94.19%), Postives = 152/155 (98.06%), Query Frame = 1


Query: 1    MKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGS 60
            MKKLTILLYLLSCSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVE AL+GS
Sbjct: 1969 MKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVESALVGS 2028

Query: 61   SRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQRFLYEQYESEFEEGEGEGAL 120
            SRTEKDCSQFDNDRVTLLLWPEPRNPLD++QNGSCSIVDQRFLYE++ESEFEEGEGEG L
Sbjct: 2029 SRTEKDCSQFDNDRVTLLLWPEPRNPLDMMQNGSCSIVDQRFLYEKHESEFEEGEGEGVL 2088

Query: 121  NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 156
            +PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Sbjct: 2089 DPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 2123

[Close]

BLAST of Cla021817 vs. NCBI nr
Match: gi|290489012|gb|ADD30890.1| (putative RF2 protein (chloroplast) [Berberidopsis corallina])

HSP 1 Score: 314.7 bits (805), Expect = 1.0e-82
Identity = 149/155 (96.13%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1    MKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGS 60
            MKKLTILLYLLSCSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GS
Sbjct: 1960 MKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGS 2019

Query: 61   SRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQRFLYEQYESEFEEGEGEGAL 120
            SRTEKDCSQFDNDRVTLLL PEPRNPLD++QNGSCSIVDQRFLYE+YESEFEEGEGEGAL
Sbjct: 2020 SRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGEGEGAL 2079

Query: 121  NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 156
            NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Sbjct: 2080 NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 2114

[Close]

BLAST of Cla021817 vs. NCBI nr
Match: gi|340807265|gb|AEK71846.1| (hypothetical chloroplast RF2 [Aextoxicon punctatum])

HSP 1 Score: 314.7 bits (805), Expect = 1.0e-82
Identity = 149/155 (96.13%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1    MKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGS 60
            MKKLTILLYLLSCSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GS
Sbjct: 1962 MKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGS 2021

Query: 61   SRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQRFLYEQYESEFEEGEGEGAL 120
            SRTEKDCSQFDNDRVTLLL PEPRNPLD++QNGSCSIVDQRFLYE+YESEFEEGEGEGAL
Sbjct: 2022 SRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGEGEGAL 2081

Query: 121  NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 156
            NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Sbjct: 2082 NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 2116

[Close]

BLAST of Cla021817 vs. NCBI nr
Match: gi|146261190|gb|ABQ14815.1| (Ycf2 [Cercidiphyllum japonicum])

HSP 1 Score: 312.8 bits (800), Expect = 3.8e-82
Identity = 148/155 (95.48%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1    MKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGS 60
            MKKLTILLYLLSCSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GS
Sbjct: 1957 MKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGS 2016

Query: 61   SRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQRFLYEQYESEFEEGEGEGAL 120
            SRTEKDCSQFDNDRVTLLL PEPRNPLD++QNGSCSIVDQRFLYE+YESEFEEGEGEGAL
Sbjct: 2017 SRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGEGEGAL 2076

Query: 121  NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 156
            +PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Sbjct: 2077 DPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 2111

[Close]

BLAST of Cla021817 vs. NCBI nr
Match: gi|146261199|gb|ABQ14823.1| (Ycf2 [Daphniphyllum sp. 205-82])

HSP 1 Score: 312.8 bits (800), Expect = 3.8e-82
Identity = 148/155 (95.48%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1    MKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGS 60
            MKKLTILLYLLSCSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GS
Sbjct: 1965 MKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGS 2024

Query: 61   SRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQRFLYEQYESEFEEGEGEGAL 120
            SRTEKDCSQFDNDRVTLLL PEPRNPLD++QNGSCSIVDQRFLYE+YESEFEEGEGEGAL
Sbjct: 2025 SRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGEGEGAL 2084

Query: 121  NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 156
            +PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Sbjct: 2085 DPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 2119

[Close]

BLAST of Cla021817 vs. NCBI nr
Match: gi|570880059|ref|YP_008994333.1| (hypothetical chloroplast RF21 [Melianthus villosus])

HSP 1 Score: 312.4 bits (799), Expect = 4.9e-82
Identity = 146/155 (94.19%), Postives = 152/155 (98.06%), Query Frame = 1


Query: 1    MKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGS 60
            MKKLTILLYLLSCSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVE AL+GS
Sbjct: 1969 MKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVESALVGS 2028

Query: 61   SRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQRFLYEQYESEFEEGEGEGAL 120
            SRTEKDCSQFDNDRVTLLLWPEPRNPLD++QNGSCSIVDQRFLYE++ESEFEEGEGEG L
Sbjct: 2029 SRTEKDCSQFDNDRVTLLLWPEPRNPLDMMQNGSCSIVDQRFLYEKHESEFEEGEGEGVL 2088

Query: 121  NPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 156
            +PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Sbjct: 2089 DPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE 2123

The following BLAST results are available for this feature:

BLAST of Cla021817 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YCF2_VITVI	1.0e-82	94.19	Protein Ycf2 OS=Vitis vinifera GN=ycf2-A PE=3 SV=1	[more]
YCF2_COFAR	4.9e-82	92.90	Protein Ycf2 OS=Coffea arabica GN=ycf2-A PE=3 SV=1	[more]
YCF2_PANGI	4.9e-82	93.55	Protein Ycf2 OS=Panax ginseng GN=ycf2-A PE=3 SV=1	[more]
YCF2_CITSI	1.1e-81	92.90	Protein Ycf2 OS=Citrus sinensis GN=ycf2-A PE=3 SV=1	[more]
YCF2_CARPA	1.9e-81	92.90	Protein Ycf2 OS=Carica papaya GN=ycf2-A PE=3 SV=1	[more]

BLAST of Cla021817 vs. TrEMBL


Match Name	E-value	Identity	Description
G0YE19_9MAGN	7.0e-83	96.13	Protein Ycf2 OS=Aextoxicon punctatum GN=ycf2 PE=3 SV=1	[more]
D3WDB4_9MAGN	7.0e-83	96.13	Protein Ycf2 OS=Berberidopsis corallina GN=ycf2 PE=3 SV=1	[more]
A6Y9W3_9MAGN	2.6e-82	95.48	Protein Ycf2 OS=Daphniphyllum sp. 205-82 GN=ycf2 PE=3 SV=1	[more]
A6Y9V5_CERJA	2.6e-82	95.48	Protein Ycf2 OS=Cercidiphyllum japonicum GN=ycf2 PE=3 SV=1	[more]
V9NYF4_9ROSI	3.4e-82	94.19	Protein Ycf2 OS=Melianthus villosus GN=ycf2 PE=3 SV=1	[more]

BLAST of Cla021817 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|290489012\|gb\|ADD30890.1\|	1.0e-82	96.13	putative RF2 protein (chloroplast) [Berberidopsis corallina]	[more]
gi\|340807265\|gb\|AEK71846.1\|	1.0e-82	96.13	hypothetical chloroplast RF2 [Aextoxicon punctatum]	[more]
gi\|146261190\|gb\|ABQ14815.1\|	3.8e-82	95.48	Ycf2 [Cercidiphyllum japonicum]	[more]
gi\|146261199\|gb\|ABQ14823.1\|	3.8e-82	95.48	Ycf2 [Daphniphyllum sp. 205-82]	[more]
gi\|570880059\|ref\|YP_008994333.1\|	4.9e-82	94.19	hypothetical chloroplast RF21 [Melianthus villosus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021817	Cla021817.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078	FAMILY NOT NAMED	coord: 1..155 score: 2.2E
None	No IPR available	PANTHER	PTHR33078:SF4	SUBFAMILY NOT NAMED	coord: 1..155 score: 2.2E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021817	Watermelon (97103) v2	wmwmbB206
Cla021817	Watermelon (97103) v2	wmwmbB217
Cla021817	Wax gourd	wgowmB067
Cla021817	Wax gourd	wgowmB201
Cla021817	Cucumber (Gy14) v1	cgywmB479
Cla021817	Cucurbita maxima (Rimu)	cmawmB242
Cla021817	Cucurbita maxima (Rimu)	cmawmB798
Cla021817	Cucurbita moschata (Rifu)	cmowmB231
Cla021817	Cucurbita moschata (Rifu)	cmowmB341
Cla021817	Cucurbita moschata (Rifu)	cmowmB793
Cla021817	Melon (DHL92) v3.5.1	mewmB461
Cla021817	Watermelon (Charleston Gray)	wcgwmB286
Cla021817	Watermelon (Charleston Gray)	wcgwmB332
Cla021817	Cucumber (Chinese Long) v2	cuwmB233
Cla021817	Cucurbita pepo (Zucchini)	cpewmB152
Cla021817	Cucurbita pepo (Zucchini)	cpewmB613
Cla021817	Cucurbita pepo (Zucchini)	cpewmB845
Cla021817	Bottle gourd (USVL1VR-Ls)	lsiwmB366
Cla021817	Cucumber (Gy14) v2	cgybwmB217
Cla021817	Melon (DHL92) v3.6.1	medwmB094
Cla021817	Melon (DHL92) v3.6.1	medwmB447
Cla021817	Silver-seed gourd	carwmB0070
Cla021817	Silver-seed gourd	carwmB0269
Cla021817	Silver-seed gourd	carwmB0738
Cla021817	Cucumber (Chinese Long) v3	cucwmB239