Cla021333 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021333
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 2263197 .. 2263487 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTGAATTGGAGCCCCGAGTGAAGCCACTGGACTACAAAGTGAAAGGAGTTTCCAGAGAATCGCCGTCTCAGAAGGCCGCCAATGTTCTTGATTCCGATCTTCGCACTCATTGGTCCACTGCCACCAACACCAAAGAGTGGATTCTTCTCGAGTTGGATGTACGTAATCCTTTATTCCCCCCCCGCGCGCGCCTAATTGACAGAAATATTGAATTGACATTTGAGAAATTCAATGAGAACGAACTATTCAGCTTCGTTCTTGCGGTAAAGCGAACAATTGTGTGA

mRNA sequence

ATGGAGATTGAATTGGAGCCCCGAGTGAAGCCACTGGACTACAAAGTGAAAGGAGTTTCCAGAGAATCGCCGTCTCAGAAGGCCGCCAATGTTCTTGATTCCGATCTTCGCACTCATTGGTCCACTGCCACCAACACCAAAGAGTGGATTCTTCTCGAGTTGGATGTACGTAATCCTTTATTCCCCCCCCGCGCGCGCCTAATTGACAGAAATATTGAATTGACATTTGAGAAATTCAATGAGAACGAACTATTCAGCTTCGTTCTTGCGGTAAAGCGAACAATTGTGTGA

Coding sequence (CDS)

ATGGAGATTGAATTGGAGCCCCGAGTGAAGCCACTGGACTACAAAGTGAAAGGAGTTTCCAGAGAATCGCCGTCTCAGAAGGCCGCCAATGTTCTTGATTCCGATCTTCGCACTCATTGGTCCACTGCCACCAACACCAAAGAGTGGATTCTTCTCGAGTTGGATGTACGTAATCCTTTATTCCCCCCCCGCGCGCGCCTAATTGACAGAAATATTGAATTGACATTTGAGAAATTCAATGAGAACGAACTATTCAGCTTCGTTCTTGCGGTAAAGCGAACAATTGTGTGA

Protein sequence

MEIELEPRVKPLDYKVKGVSRESPSQKAANVLDSDLRTHWSTATNTKEWILLELDVRNPLFPPRARLIDRNIELTFEKFNENELFSFVLAVKRTIV

Homology

[Close]

BLAST of Cla021333 vs. TrEMBL
Match: A0A0A0L6H0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126880 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.3e-21
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 1


Query: 1  MEIELEPRVKPLDYKVKGVSRESPSQKAANVLDSDLRTHWSTATNTKEWILLELDVRNPL 60
          MEIELEPRVK LDYKVKGVSRESPSQKAANVLD DLRTHWSTATNTKEWILLELD   P 
Sbjct: 1  MEIELEPRVKALDYKVKGVSRESPSQKAANVLDLDLRTHWSTATNTKEWILLELD--EPC 60

Query: 61 FPPRARLIDRNI 73
               R+ ++++
Sbjct: 61 LLSHIRIYNKSV 70

[Close]

BLAST of Cla021333 vs. TrEMBL
Match: A0A061F0C4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_025728 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.8e-20
Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = 1


Query: 1  MEIELEPRVKPLDYKVKGVSRESPSQKAANVLDSDLRTHWSTATNTKEWILLELDVRNPL 60
          MEIELEPRVKPL YKVK  SRESPSQKA+NVLD+DLRTHWSTATNTKEWILLELD   P 
Sbjct: 1  MEIELEPRVKPLSYKVKATSRESPSQKASNVLDTDLRTHWSTATNTKEWILLELD--EPC 60

Query: 61 FPPRARLIDRNI 73
               R+ ++++
Sbjct: 61 LLSHIRIYNKSV 70

[Close]

BLAST of Cla021333 vs. TrEMBL
Match: V4TL83_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030475mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.8e-20
Identity = 53/72 (73.61%), Postives = 60/72 (83.33%), Query Frame = 1


Query: 1  MEIELEPRVKPLDYKVKGVSRESPSQKAANVLDSDLRTHWSTATNTKEWILLELDVRNPL 60
          MEIELEPRVKPL YKVKG+SRESPSQKAA VLD+DLRTHWSTATNTKEWILLELD   P 
Sbjct: 1  MEIELEPRVKPLPYKVKGMSRESPSQKAAFVLDTDLRTHWSTATNTKEWILLELD--EPC 60

Query: 61 FPPRARLIDRNI 73
               R+ ++++
Sbjct: 61 LLSHIRIYNKSV 70

[Close]

BLAST of Cla021333 vs. TrEMBL
Match: A0A067EDV2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000588mg PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.0e-20
Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = 1


Query: 1  MEIELEPRVKPLDYKVKGVSRESPSQKAANVLDSDLRTHWSTATNTKEWILLELDVRNPL 60
          MEIELEPRVKPL YKVKG+SRESPSQKA  VLD+DLRTHWSTATNTKEWILLELD   P 
Sbjct: 1  MEIELEPRVKPLPYKVKGMSRESPSQKATFVLDTDLRTHWSTATNTKEWILLELD--EPC 60

Query: 61 FPPRARLIDRNI 73
               R+ ++++
Sbjct: 61 LLSHIRIYNKSV 70

[Close]

BLAST of Cla021333 vs. TrEMBL
Match: A0A0D2NZT5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G249800 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-19
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 1


Query: 1  MEIELEPRVKPLDYKVKGVSRESPSQKAANVLDSDLRTHWSTATNTKEWILLELDVRNPL 60
          MEIELEPRVKPL YKVK  SRESPSQKA++VLD+DLRTHWSTATNTKEWILLELD   P 
Sbjct: 1  MEIELEPRVKPLSYKVKATSRESPSQKASHVLDTDLRTHWSTATNTKEWILLELD--EPC 60

Query: 61 FPPRARLIDRNI 73
               R+ ++++
Sbjct: 61 LLSHIRIYNKSV 70

[Close]

BLAST of Cla021333 vs. NCBI nr
Match: gi|659075542|ref|XP_008438200.1| (PREDICTED: uncharacterized protein LOC103483377 isoform X1 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = 1


Query: 1  MEIELEPRVKPLDYKVKGVSRESPSQKAANVLDSDLRTHWSTATNTKEWILLELDVRNPL 60
          MEIELEPRVKPLDYKVKGVSRESPSQKAANVLDSDLRTHWSTATNTKEWILLELD   P 
Sbjct: 1  MEIELEPRVKPLDYKVKGVSRESPSQKAANVLDSDLRTHWSTATNTKEWILLELD--EPC 60

Query: 61 FPPRARLIDRNI 73
               R+ ++++
Sbjct: 61 LLSHIRIYNKSV 70

[Close]

BLAST of Cla021333 vs. NCBI nr
Match: gi|778677516|ref|XP_011650802.1| (PREDICTED: uncharacterized protein LOC101217878 isoform X1 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 4.7e-21
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 1


Query: 1  MEIELEPRVKPLDYKVKGVSRESPSQKAANVLDSDLRTHWSTATNTKEWILLELDVRNPL 60
          MEIELEPRVK LDYKVKGVSRESPSQKAANVLD DLRTHWSTATNTKEWILLELD   P 
Sbjct: 1  MEIELEPRVKALDYKVKGVSRESPSQKAANVLDLDLRTHWSTATNTKEWILLELD--EPC 60

Query: 61 FPPRARLIDRNI 73
               R+ ++++
Sbjct: 61 LLSHIRIYNKSV 70

[Close]

BLAST of Cla021333 vs. NCBI nr
Match: gi|590640062|ref|XP_007029851.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 105.9 bits (263), Expect = 4.0e-20
Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = 1


Query: 1  MEIELEPRVKPLDYKVKGVSRESPSQKAANVLDSDLRTHWSTATNTKEWILLELDVRNPL 60
          MEIELEPRVKPL YKVK  SRESPSQKA+NVLD+DLRTHWSTATNTKEWILLELD   P 
Sbjct: 1  MEIELEPRVKPLSYKVKATSRESPSQKASNVLDTDLRTHWSTATNTKEWILLELD--EPC 60

Query: 61 FPPRARLIDRNI 73
               R+ ++++
Sbjct: 61 LLSHIRIYNKSV 70

[Close]

BLAST of Cla021333 vs. NCBI nr
Match: gi|567889651|ref|XP_006437346.1| (hypothetical protein CICLE_v10030475mg [Citrus clementina])

HSP 1 Score: 105.9 bits (263), Expect = 4.0e-20
Identity = 53/72 (73.61%), Postives = 60/72 (83.33%), Query Frame = 1


Query: 1  MEIELEPRVKPLDYKVKGVSRESPSQKAANVLDSDLRTHWSTATNTKEWILLELDVRNPL 60
          MEIELEPRVKPL YKVKG+SRESPSQKAA VLD+DLRTHWSTATNTKEWILLELD   P 
Sbjct: 1  MEIELEPRVKPLPYKVKGMSRESPSQKAAFVLDTDLRTHWSTATNTKEWILLELD--EPC 60

Query: 61 FPPRARLIDRNI 73
               R+ ++++
Sbjct: 61 LLSHIRIYNKSV 70

[Close]

BLAST of Cla021333 vs. NCBI nr
Match: gi|672176606|ref|XP_008808372.1| (PREDICTED: uncharacterized protein LOC103720448 isoform X2 [Phoenix dactylifera])

HSP 1 Score: 105.1 bits (261), Expect = 6.7e-20
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 1


Query: 1  MEIELEPRVKPLDYKVKGVSRESPSQKAANVLDSDLRTHWSTATNTKEWILLELD 56
          ME+ELEPRVKPL YKVK +SRESP+QKAANVLDSDLRTHWSTATNTKEWILLELD
Sbjct: 1  MEMELEPRVKPLAYKVKAMSRESPAQKAANVLDSDLRTHWSTATNTKEWILLELD 55

The following BLAST results are available for this feature:

BLAST of Cla021333 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6H0_CUCSA	3.3e-21	76.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126880 PE=4 SV=1	[more]
A0A061F0C4_THECC	2.8e-20	72.22	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_025728 PE=4 SV=1	[more]
V4TL83_9ROSI	2.8e-20	73.61	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030475mg PE=4 SV=1	[more]
A0A067EDV2_CITSI	8.0e-20	72.22	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000588mg PE=4 SV=1	[more]
A0A0D2NZT5_GOSRA	1.0e-19	70.83	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G249800 PE=4 SV=1	[more]

BLAST of Cla021333 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075542\|ref\|XP_008438200.1\|	1.1e-22	79.17	PREDICTED: uncharacterized protein LOC103483377 isoform X1 [Cucumis melo]	[more]
gi\|778677516\|ref\|XP_011650802.1\|	4.7e-21	76.39	PREDICTED: uncharacterized protein LOC101217878 isoform X1 [Cucumis sativus]	[more]
gi\|590640062\|ref\|XP_007029851.1\|	4.0e-20	72.22	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]
gi\|567889651\|ref\|XP_006437346.1\|	4.0e-20	73.61	hypothetical protein CICLE_v10030475mg [Citrus clementina]	[more]
gi\|672176606\|ref\|XP_008808372.1\|	6.7e-20	90.91	PREDICTED: uncharacterized protein LOC103720448 isoform X2 [Phoenix dactylifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008299	isoprenoid biosynthetic process
biological_process	GO:0000012	single strand break repair
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003684	damaged DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021333	Cla021333.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021333	Melon (DHL92) v3.5.1	mewmB098
Cla021333	Melon (DHL92) v3.5.1	mewmB461
Cla021333	Watermelon (Charleston Gray)	wcgwmB286
Cla021333	Watermelon (Charleston Gray)	wcgwmB327
Cla021333	Cucumber (Chinese Long) v2	cuwmB233
Cla021333	Cucumber (Chinese Long) v2	cuwmB493
Cla021333	Cucurbita pepo (Zucchini)	cpewmB151
Cla021333	Cucurbita pepo (Zucchini)	cpewmB330
Cla021333	Cucurbita pepo (Zucchini)	cpewmB613
Cla021333	Cucurbita pepo (Zucchini)	cpewmB845
Cla021333	Bottle gourd (USVL1VR-Ls)	lsiwmB022
Cla021333	Bottle gourd (USVL1VR-Ls)	lsiwmB365
Cla021333	Cucumber (Gy14) v2	cgybwmB217
Cla021333	Cucumber (Gy14) v2	cgybwmB459
Cla021333	Melon (DHL92) v3.6.1	medwmB096
Cla021333	Melon (DHL92) v3.6.1	medwmB447
Cla021333	Silver-seed gourd	carwmB0218
Cla021333	Silver-seed gourd	carwmB0617
Cla021333	Silver-seed gourd	carwmB0961
Cla021333	Silver-seed gourd	carwmB1074
Cla021333	Cucumber (Chinese Long) v3	cucwmB239
Cla021333	Cucumber (Chinese Long) v3	cucwmB517
Cla021333	Watermelon (97103) v2	wmwmbB206
Cla021333	Watermelon (97103) v2	wmwmbB214
Cla021333	Wax gourd	wgowmB070
Cla021333	Wax gourd	wgowmB203
Cla021333	Watermelon (97103) v1	wmwmB137
Cla021333	Cucumber (Gy14) v1	cgywmB479
Cla021333	Cucumber (Gy14) v1	cgywmB663
Cla021333	Cucurbita maxima (Rimu)	cmawmB242
Cla021333	Cucurbita maxima (Rimu)	cmawmB344
Cla021333	Cucurbita maxima (Rimu)	cmawmB798
Cla021333	Cucurbita maxima (Rimu)	cmawmB871
Cla021333	Cucurbita moschata (Rifu)	cmowmB231
Cla021333	Cucurbita moschata (Rifu)	cmowmB340
Cla021333	Cucurbita moschata (Rifu)	cmowmB793
Cla021333	Cucurbita moschata (Rifu)	cmowmB858