Cla021277 (gene) Watermelon (97103) v1

NameCla021277
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRetrotransposon protein (AHRD V1 ***- E5GCB5_CUCME)
LocationChr5 : 1767281 .. 1768517 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGCCACTGTGCAATGCTGTCAAAAGTTGGAATCCCTCACGAACAACCTCGGTGTACTCTCCAATCAATGAACTTCGAGACCTCCTACTCCTTGATTGCAAGCTACTTCCAGACCATCTACCGCTGGGGTAGTCGAAAAGTACTCTGACGTGGACGAGCTAGCAAAAGGTGGATCAGGAATATAAAAGTTCTCAAAATTTTGGGGATTGGTTGTTCAGGATGTCCTCGTTCTCCTCTCCCATAACAGGTTCATATCCGATCTCTGCAGTGGTGGTTGCATGACTCCCTATGGCTCTGTCTTTGCCGAATACAATGGCCAAGTCATCATAGTATGGAAATGACTTATGGCGCAGTTCTTTTACACTCAGATGACTCTGTTAAAAGTGGCTTGTGTTATGTTATGGCCTATGCAAATTTAAACGAAGAAGAAATAAATAAAACATGTAATTAAATTACTTTGACCCATGCGTCAAATATCTCCGCCTCACAATTAATATATTTGCGCTCCACATTCCACCCAAACCCACTACAGTCTGGGCCAACATTTTAGCGATCGCACTGTAATGTCGTACTGTCTCTTCAGGGTGTTCCATACAGGTCAGCCCACATCTGGAGTCAAGGGTCAGGACCCTGAAGAGACAGTACAGTGGGTTTGGGTGGAATGTGGAGCGCAAATGTATTGATTGTGAGGCGGAGATATTTGACGCATGGGTCATTTCCATACTTAATTTAATTACATGTTTTATTTATTTCTTCTTCGTTTAAATTTGTATAGGCCATAACATAACACAAGCCACCTTTAACAGAGTCATCCGAGTGCAAAAGAACTGCGCCATAAGTCATTTTCATACTATGATGACTTGGCCATCGTATTCGGCAAAGATAGAGCCACAAGGAGTCATGCAACCACCACTGCAGAGATCAGATATGAACCTGTTATGGGAGAGGAGAACGAAGACATCCTGAACAACCAGTCCCTAGACTTTGAGAACTTTTATATTCCTGATCCACCTTTTGCTAGCTCGCCCACGTCAGAGGACTTTTCGACTACTCCCAGCGGTAGATGGTTTGGGAGTAGCTTGCCATCAAGGAGTAGTAGGTCCCGAAGTTCATCGATTGGAGAGTACAGCAAGGTGGTTCGTGAGGGATTCCAACTTCTGACGAAGTCTATTGACGGCATTGCACAGTGGCCTGTCATGAACGAGGACCTGGCAAGGCGTCGTCGTCGTTGA

mRNA sequence

ATGACAAGCCACTGTGCAATGCTGTCAAAAGTTGGAATCCCTCACGAACAACCTCGGTGTACTCTCCAATCAATGAACTTCGAGACCTCCTACTCCTTGATTGCAAGCTACTTCCAGACCATCTACCGCTGGGGTAGTCGAAAAGTCAGCCCACATCTGGAGTCAAGGGTCAGGACCCTGAAGAGACAGTACAGTGGGTTTGGGTGGAATGTGGAGCGCAAATGTATTGATTGTGAGGCGGAGATATTTGACGCATGGAGTCATCCGAGTGCAAAAGAACTGCGCCATAAGTCATTTTCATACTATGATGACTTGGCCATCGTATTCGGCAAAGATAGAGCCACAAGGAGTCATGCAACCACCACTGCAGAGATCAGATATGAACCTGTTATGGGAGAGGAGAACGAAGACATCCTGAACAACCAGTCCCTAGACTTTGAGAACTTTTATATTCCTGATCCACCTTTTGCTAGCTCGCCCACGTCAGAGGACTTTTCGACTACTCCCAGCGGTAGATGGTTTGGGAGTAGCTTGCCATCAAGGAGTAGTAGGTCCCGAAGTTCATCGATTGGAGAGTACAGCAAGGTGGTTCGTGAGGGATTCCAACTTCTGACGAAGTCTATTGACGGCATTGCACAGTGGCCTGTCATGAACGAGGACCTGGCAAGGCGTCGTCGTCGTTGA

Coding sequence (CDS)

ATGACAAGCCACTGTGCAATGCTGTCAAAAGTTGGAATCCCTCACGAACAACCTCGGTGTACTCTCCAATCAATGAACTTCGAGACCTCCTACTCCTTGATTGCAAGCTACTTCCAGACCATCTACCGCTGGGGTAGTCGAAAAGTCAGCCCACATCTGGAGTCAAGGGTCAGGACCCTGAAGAGACAGTACAGTGGGTTTGGGTGGAATGTGGAGCGCAAATGTATTGATTGTGAGGCGGAGATATTTGACGCATGGAGTCATCCGAGTGCAAAAGAACTGCGCCATAAGTCATTTTCATACTATGATGACTTGGCCATCGTATTCGGCAAAGATAGAGCCACAAGGAGTCATGCAACCACCACTGCAGAGATCAGATATGAACCTGTTATGGGAGAGGAGAACGAAGACATCCTGAACAACCAGTCCCTAGACTTTGAGAACTTTTATATTCCTGATCCACCTTTTGCTAGCTCGCCCACGTCAGAGGACTTTTCGACTACTCCCAGCGGTAGATGGTTTGGGAGTAGCTTGCCATCAAGGAGTAGTAGGTCCCGAAGTTCATCGATTGGAGAGTACAGCAAGGTGGTTCGTGAGGGATTCCAACTTCTGACGAAGTCTATTGACGGCATTGCACAGTGGCCTGTCATGAACGAGGACCTGGCAAGGCGTCGTCGTCGTTGA

Protein sequence

MTSHCAMLSKVGIPHEQPRCTLQSMNFETSYSLIASYFQTIYRWGSRKVSPHLESRVRTLKRQYSGFGWNVERKCIDCEAEIFDAWSHPSAKELRHKSFSYYDDLAIVFGKDRATRSHATTTAEIRYEPVMGEENEDILNNQSLDFENFYIPDPPFASSPTSEDFSTTPSGRWFGSSLPSRSSRSRSSSIGEYSKVVREGFQLLTKSIDGIAQWPVMNEDLARRRRR
BLAST of Cla021277 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.5e-19
Identity = 64/194 (32.99%), Postives = 95/194 (48.97%), Query Frame = 1

Query: 45  GSRKVSPHLESRVRTLKRQY-----------SGFGWNVERKCIDCEAEIFDAWSHPSAKE 104
           GS   +  ++SR++ +KR +           SGFGWN E+KCI  E E+FD WSHP+AK 
Sbjct: 413 GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKG 472

Query: 105 LRHKSFSYYDDLAIVFGKDRATRSHATTTAEIRYEPVMGEENEDILNNQSLDFENFYIPD 164
           L +KSF +YD+L+ VFGKDRAT   A + A+I      G +          DF   Y P 
Sbjct: 473 LLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPG 532

Query: 165 PPFASSPTSEDFSTTPSGRWFGSSLPSRSSRSRSSSIGEYSKVVREGFQLLTKSIDGIAQ 224
              +     E  +   S R    ++ S S R R     +   +VR   +   + +  IA+
Sbjct: 533 LNMSPDDLMETRTARVSER---RNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 592

Query: 225 WPVMNEDLARRRRR 228
           WP++    A + R+
Sbjct: 593 WPILQRQDATQTRQ 603

BLAST of Cla021277 vs. TrEMBL
Match: A0A162AHN3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_009785 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 51/127 (40.16%), Postives = 67/127 (52.76%), Query Frame = 1

Query: 48  KVSPHLESRVRTLKRQY-----------SGFGWNVERKCIDCEAEIFDAW--SHPSAKEL 107
           K  PH+ESRVR L++Q+           SGFGWN   K I CE  IF+ W  SHP+AK L
Sbjct: 73  KARPHIESRVRLLRKQFFAIEEMRGPNCSGFGWNELEKSITCEKSIFEEWLKSHPNAKGL 132

Query: 108 RHKSFSYYDDLAIVFGKDRATRSHATTTAEIRYEPVMGEENEDILNNQSLDFENFYIPDP 162
           R+KSF +YD+LA VFGKDRA      + A+   E +  +E  ++        +N      
Sbjct: 133 RNKSFPFYDELAQVFGKDRANGEGVESPAD-AVEEIANDEESNLYQQAGQQKDNLEDEVS 192

BLAST of Cla021277 vs. TrEMBL
Match: A0A161XV48_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018898 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 51/119 (42.86%), Postives = 64/119 (53.78%), Query Frame = 1

Query: 30  SYSLIASYFQTIYRWGSRKVSPHLESRVRTLKRQY-----------SGFGWNVERKCIDC 89
           +Y  +    + I      K  PH+ESRVR  ++QY           SGFGWN   K I C
Sbjct: 53  AYGKLEKIMEDIQPGCGMKARPHIESRVRLWRKQYFAIEEMRGPNCSGFGWNELDKSITC 112

Query: 90  EAEIFDAW--SHPSAKELRHKSFSYYDDLAIVFGKDRATRSHATTTAEIRYEPVMGEEN 136
           E  IF+ W  SHP+AK LR+KSF YYD+L+ VFGKDRA      + A+   E    EEN
Sbjct: 113 EKSIFEDWLKSHPNAKGLRNKSFPYYDELSQVFGKDRANGECVESPADAVEEIANEEEN 171

BLAST of Cla021277 vs. TrEMBL
Match: A0A0J8BIR4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g018220 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.0e-14
Identity = 56/160 (35.00%), Postives = 82/160 (51.25%), Query Frame = 1

Query: 47  RKVSPHLESRVRTLKRQY-----------SGFGWNVERKCIDCEAEIFDAW--SHPSAKE 106
           +K  PH+ESRV+ L++QY           SGFGWN E K + C   ++D W  SH +A  
Sbjct: 68  KKAKPHIESRVKHLRKQYDAITEMLSPSASGFGWNDEEKFVTCPQAVWDEWIKSHKNAAG 127

Query: 107 LRHKSFSYYDDLAIVFGKDRATRSHATTTAEIRYEPVMGEENEDILNNQSLDFENFYIP- 166
           LR+K F +Y++L  ++GKDRA  + + T  ++  E   G   E+      L+ E    P 
Sbjct: 128 LRNKPFPFYEELGKIWGKDRAVGNESGTVYDVLQEMEHGARVEEEHQVPDLNAEESNSPT 187

Query: 167 --DPPFASSPTSEDFSTTPSGRWFGSSLPSRSSRSRSSSI 191
             DP     P+S   STTPS         SR+ R+R+ +I
Sbjct: 188 QCDP--TGPPSSTPQSTTPSS--------SRTKRARTETI 217

BLAST of Cla021277 vs. TrEMBL
Match: A0A0A0M0S6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665930 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.1e-14
Identity = 53/153 (34.64%), Postives = 79/153 (51.63%), Query Frame = 1

Query: 58  RTLKRQYSGFGWNVERKCIDCEAEIFDAW--SHPSAKELRHKSFSYYDDLAIVFGKDRAT 117
           + L+  Y+ FGWN ERKCI  E  +FD W   H +A+ L +KSFSY+ DL IV G+DR  
Sbjct: 58  KLLEATYNRFGWNEERKCIKVEKSMFDDWVKEHHNARGLLNKSFSYFYDLQIVIGRDRTI 117

Query: 118 RSHATTTAEIRYEPVMGEENEDILNNQSLDFENFYIPDPPFASSPTSEDFSTTPSGRWFG 177
                T  E+  +     E +DI     ++ E+F IP P     P+ ++ S+TP+     
Sbjct: 118 GDRCKTPVEMDPQTTKDIEKDDI----GINLEDFDIPKPHGLELPSVKNMSSTPTSMIL- 177

Query: 178 SSLPSRSSRSRSSSIGEYSKVVREGFQLLTKSI 209
            +   R SR R S    +   +RE F+ + K +
Sbjct: 178 DARSYRQSRKRRSYSCTFCASMRETFKEIGKIV 205

BLAST of Cla021277 vs. NCBI nr
Match: gi|659111294|ref|XP_008455678.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19
Identity = 65/180 (36.11%), Postives = 93/180 (51.67%), Query Frame = 1

Query: 48  KVSPHLESRVRTLKRQY-----------SGFGWNVERKCIDCEAEIFDAW--SHPSAKEL 107
           +V+ +LESRV+ LK+QY           S FGWN ERKCI+ E  +FD W   HP+A+ L
Sbjct: 95  QVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARGL 154

Query: 108 RHKSFSYYDDLAIVFGKDRATRSHATTTAEIRYEPVMGEENEDILNNQSLDFENFYIPDP 167
            +K F+Y+ DL IVFG+D+AT        E+  +     E +D+     ++ E+F IP+P
Sbjct: 155 LNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDM----DINLEDFDIPNP 214

Query: 168 PFASSPTSEDFSTTPSGRWFGSSLPSRSSRSRSSSIGEYSKVVREGFQLLTKSIDGIAQW 215
                P+ ED  +T       +   SR S+ R S  G+     R   Q  +K I  IA W
Sbjct: 215 HGLEPPSGEDMPSTLISMTHDAG-SSRPSKKRRSYPGDLMDTFRASMQETSKEIGKIAAW 269

BLAST of Cla021277 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 104.0 bits (258), Expect = 3.5e-19
Identity = 64/194 (32.99%), Postives = 95/194 (48.97%), Query Frame = 1

Query: 45  GSRKVSPHLESRVRTLKRQY-----------SGFGWNVERKCIDCEAEIFDAWSHPSAKE 104
           GS   +  ++SR++ +KR +           SGFGWN E+KCI  E E+FD WSHP+AK 
Sbjct: 413 GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKG 472

Query: 105 LRHKSFSYYDDLAIVFGKDRATRSHATTTAEIRYEPVMGEENEDILNNQSLDFENFYIPD 164
           L +KSF +YD+L+ VFGKDRAT   A + A+I      G +          DF   Y P 
Sbjct: 473 LLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPG 532

Query: 165 PPFASSPTSEDFSTTPSGRWFGSSLPSRSSRSRSSSIGEYSKVVREGFQLLTKSIDGIAQ 224
              +     E  +   S R    ++ S S R R     +   +VR   +   + +  IA+
Sbjct: 533 LNMSPDDLMETRTARVSER---RNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 592

Query: 225 WPVMNEDLARRRRR 228
           WP++    A + R+
Sbjct: 593 WPILQRQDATQTRQ 603

BLAST of Cla021277 vs. NCBI nr
Match: gi|659125386|ref|XP_008462659.1| (PREDICTED: uncharacterized protein LOC103500963 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 1.8e-18
Identity = 58/159 (36.48%), Postives = 86/159 (54.09%), Query Frame = 1

Query: 60  LKRQYSGFGWNVERKCIDCEAEIFDAW--SHPSAKELRHKSFSYYDDLAIVFGKDRATRS 119
           ++  YS FGWN ERKCI+ E  +FD W   HP+A+ L +K+F Y+ DL +VFG+DRAT  
Sbjct: 2   MRPAYSRFGWNEERKCIEAEKSVFDDWVKGHPNARGLLNKAFPYFYDLEVVFGRDRATIG 61

Query: 120 HATTTAEIRYEPVMGEENEDILNNQSLDFENFYIPDPPFASSPTSEDFSTTPSGRWF--G 179
              T  ++  +     E +D+     ++ E+F IP+P     P+ ED ++TP+      G
Sbjct: 62  RCKTPVQMGSQIAKDTEEDDM----DINLEDFDIPNPHELEPPSREDMTSTPTSMAHDAG 121

Query: 180 SSLPSRSSRSRSSSIGEYSKVVREGFQLLTKSIDGIAQW 215
           SS PS+  RS S   G+         +  +K I  IA W
Sbjct: 122 SSRPSKKRRSYS---GDLVNTFHASMRETSKEIGKIAAW 153

BLAST of Cla021277 vs. NCBI nr
Match: gi|659071532|ref|XP_008460440.1| (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 8.7e-18
Identity = 58/154 (37.66%), Postives = 84/154 (54.55%), Query Frame = 1

Query: 65  SGFGWNVERKCIDCEAEIFDAW--SHPSAKELRHKSFSYYDDLAIVFGKDRATRSHATTT 124
           S FGWN E+KCI+ +  +FD W   HP+A+ L +KSF Y+ DL I+FG+DRAT     T 
Sbjct: 6   SRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGGRCKTP 65

Query: 125 AEIRYEPVMGEENEDILNNQSLDFENFYIPDPPFASSPTSEDFSTTPS--GRWFGSSLPS 184
            E+  +     E +D+     ++ E+F IP+P     P+ ED S+TP+      GSS PS
Sbjct: 66  IEMGLQIARDTEEDDM----DINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPS 125

Query: 185 RSSRSRSSSIGEYSKVVREGFQLLTKSIDGIAQW 215
           +  RS S  + +     R   +  +K I  IA W
Sbjct: 126 KKRRSYSEDLMD---TFRASMRETSKEIRKIAAW 152

BLAST of Cla021277 vs. NCBI nr
Match: gi|659125959|ref|XP_008462939.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 94.4 bits (233), Expect = 2.8e-16
Identity = 50/121 (41.32%), Postives = 70/121 (57.85%), Query Frame = 1

Query: 65  SGFGWNVERKCIDCEAEIFDAW--SHPSAKELRHKSFSYYDDLAIVFGKDRATRSHATTT 124
           SGFGWN ERKCI+ E  +FD W   HP+A++L +K F Y+ DL IVFG+D AT     T 
Sbjct: 61  SGFGWNEERKCIEAEKSVFDDWVKGHPNARDLLNKPFPYFYDLKIVFGRDMATGDRCKTP 120

Query: 125 AEIRYEPVMGEENEDILNNQSLDFENFYIPDPPFASSPTSEDFSTTPSGRWF--GSSLPS 182
            E+  +     E +D+     ++ E+F IP+P     P+ ED  +TP+      GSS PS
Sbjct: 121 VEMGSQTARDTEEDDM----DINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPS 177

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GCB5_CUCME2.5e-1932.99Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A162AHN3_DAUCA1.8e-1440.16Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_009785 PE=4 SV=1[more]
A0A161XV48_DAUCA1.8e-1442.86Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018898 PE=4 SV=1[more]
A0A0J8BIR4_BETVU7.0e-1435.00Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g018220 PE=4 S... [more]
A0A0A0M0S6_CUCSA9.1e-1434.64Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665930 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659111294|ref|XP_008455678.1|1.6e-1936.11PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|307136287|gb|ADN34114.1|3.5e-1932.99retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659125386|ref|XP_008462659.1|1.8e-1836.48PREDICTED: uncharacterized protein LOC103500963 [Cucumis melo][more]
gi|659071532|ref|XP_008460440.1|8.7e-1837.66PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo][more]
gi|659125959|ref|XP_008462939.1|2.8e-1641.32PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla021277Cla021277.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31704FAMILY NOT NAMEDcoord: 48..136
score: 1.3
NoneNo IPR availablePANTHERPTHR31704:SF16SUBFAMILY NOT NAMEDcoord: 48..136
score: 1.3

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None