Cla021253 (gene) Watermelon (97103) v1

Overview
NameCla021253
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionLIM domain-containing protein (AHRD V1 **-- D7LS75_ARALL); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type
LocationChr5 : 1612490 .. 1613654 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATTCACAGGAACATTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGAGTTGCTTTCCCTTGAAGGGAATCCTTACCATAAGTCCTGCTTCAAATGTAGCCACTGCAAGGGCACCCTTTCGGTACGATCTTCTTTTTCGTTCATTTAATCGTTCATTCGCATAATGTCGTTTGTTATAATATCGATATTTGACTCGAGTCGATCGTTACGACAGATGAGTAGCTACTCATGGATGGATGGTGTCCTGTATTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGAAATTTCAGCAAGAATTTTCAAACTTGTAATATTATTATACTTCTTTTCCATCTCTTAATCACCAATTTTTCCTATCTTCCTAACATTCTCTCATTTTCGTTATATTGAAATGGCAACAGCCAAGCCTTCTGAGAAGCAAAATGATCTGGTATGCTATTCATTCTTTTCTTTTTCCATGCCCTCAAAAGTATTAAACAATTCGCGAGGACTCCAGTAGTACTCATTTGATAGTCAAGAATCATTATTTCTAAAATCACTCCCAAACATATCATAAAGCATAATAGATCTTTCCTTTTACATAGTTTACATATTAGGTCTCGTTTTATATAAATATTCTCGAATTCAATTCCTATAATTATTACGTATGGCTTCGTAACTTTCGAAATGTGTAGCAGTCAAGGGCTCCCAGCAAACTGTCCTCCATGTTCTCTGGAACTCAAGACAAATGCGCGGTCTGCTCGAAAACGGTTTATCCGTTGGAGAAGGTCTATAGTTCTTCATTTTTTAAAGAAATTATATAAGTAGAATGTGACTAGATTTGTTGGCTAATTAAAAGTATGATCTAAATTTGATAAAAAAAAAAAAGGTGACTCTTGAGGGGGAATGTTACCATAAGAATTGCTTTAGATGTGCTCATGGTGGATGCCATTTGACACACTCTTCATATGCTGCTCTTGATGGAGTCTTGTACTGCAAGCATCATTTTGCTCAGCTCTTCATGATCAAAGGAAACTACAACCATGTCCTCGAAGCTGCTGCAAACAAGAAAGCTACCACACCGCCTCCGGAACCAGCGGAGGAAGAAGAGGCCGAGGCCGAAGCTCAGCCGCAGGCCGAGGAAGCAGCCGTAGAGCAAACTTAA

mRNA sequence

ATGTCATTCACAGGAACATTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGAGTTGCTTTCCCTTGAAGGGAATCCTTACCATAAGTCCTGCTTCAAATGTAGCCACTGCAAGGGCACCCTTTCGATGAGTAGCTACTCATGGATGGATGGTGTCCTGTATTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGAAATTTCAGCAAGAATTTTCAAACTTCCAAGCCTTCTGAGAAGCAAAATGATCTGCAGTCAAGGGCTCCCAGCAAACTGTCCTCCATGTTCTCTGGAACTCAAGACAAATGCGCGGTCTGCTCGAAAACGGTTTATCCGTTGGAGAAGGTGACTCTTGAGGGGGAATGTTACCATAAGAATTGCTTTAGATGTGCTCATGGTGGATGCCATTTGACACACTCTTCATATGCTGCTCTTGATGGAGTCTTGTACTGCAAGCATCATTTTGCTCAGCTCTTCATGATCAAAGGAAACTACAACCATGTCCTCGAAGCTGCTGCAAACAAGAAAGCTACCACACCGCCTCCGGAACCAGCGGAGGAAGAAGAGGCCGAGGCCGAAGCTCAGCCGCAGGCCGAGGAAGCAGCCGTAGAGCAAACTTAA

Coding sequence (CDS)

ATGTCATTCACAGGAACATTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGAGTTGCTTTCCCTTGAAGGGAATCCTTACCATAAGTCCTGCTTCAAATGTAGCCACTGCAAGGGCACCCTTTCGATGAGTAGCTACTCATGGATGGATGGTGTCCTGTATTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGAAATTTCAGCAAGAATTTTCAAACTTCCAAGCCTTCTGAGAAGCAAAATGATCTGCAGTCAAGGGCTCCCAGCAAACTGTCCTCCATGTTCTCTGGAACTCAAGACAAATGCGCGGTCTGCTCGAAAACGGTTTATCCGTTGGAGAAGGTGACTCTTGAGGGGGAATGTTACCATAAGAATTGCTTTAGATGTGCTCATGGTGGATGCCATTTGACACACTCTTCATATGCTGCTCTTGATGGAGTCTTGTACTGCAAGCATCATTTTGCTCAGCTCTTCATGATCAAAGGAAACTACAACCATGTCCTCGAAGCTGCTGCAAACAAGAAAGCTACCACACCGCCTCCGGAACCAGCGGAGGAAGAAGAGGCCGAGGCCGAAGCTCAGCCGCAGGCCGAGGAAGCAGCCGTAGAGCAAACTTAA

Protein sequence

MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPSEKQNDLQSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEPAEEEEAEAEAQPQAEEAAVEQT
Homology
[Close]
BLAST of Cla021253 vs. Swiss-Prot
Match: PLI2C_ARATH (LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana GN=PLIM2C PE=1 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.3e-84
Identity = 146/209 (69.86%), Postives = 171/209 (81.82%), Query Frame = 1 

Query: 2   SFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTH 61
           +FTGT DKCKACDKTVYV++L++LEG PYHKSCF+CSHC GTL + +YS MDGVLYCKTH
Sbjct: 3   AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62

Query: 62  FEQLFKESGNFSKNFQTSKPSEKQNDLQSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKVT 121
           FEQLFKESGNFSKNFQT+  +EK ND  ++AP++LSS FSGTQDKCA C KTVYPLEK+T
Sbjct: 63  FEQLFKESGNFSKNFQTAGKTEKSNDA-TKAPNRLSSFFSGTQDKCAACKKTVYPLEKMT 122

Query: 122 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 181
           +EGE YHK CFRCAH GC LTHSSYAALDGVLYCK HF+QLF+ KGNYNHVL+AAAN + 
Sbjct: 123 MEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHVLQAAANHRR 182

Query: 182 TTPPPEPAEEEEAEAE-AQPQAEEAAVEQ 210
           +T   +  E +E EA   + +  +AA E+
Sbjct: 183 STAEEDKTEPKEDEANPTEEETSDAAAEE 210

[Close]
BLAST of Cla021253 vs. Swiss-Prot
Match: PLI2B_ARATH (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 1.9e-83
Identity = 143/208 (68.75%), Postives = 165/208 (79.33%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKC  CDKTVYVV++LS+EG PYHKSCF+C+HCKGTL MS+YS MDGVLYCKT
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDLQSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKV 120
           HFEQLFKESGNFSKNFQ  K  + +    +R PSK+SS+F GTQDKCA C KTVYPLEK+
Sbjct: 61  HFEQLFKESGNFSKNFQPGKTEKPE---LTRTPSKISSIFCGTQDKCAACEKTVYPLEKI 120

Query: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180
            +EGEC+HK CFRCAHGGC LTHSSYA+LD VLYC+HHF QLFM KGNY HVL+AA +++
Sbjct: 121 QMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHRR 180

Query: 181 ---ATTPPPEPAEEEEAEAEAQPQAEEA 206
                T PPEP E+   EA+ +    E+
Sbjct: 181 TASGNTLPPEPTEDVAVEAKEENGVSES 205

[Close]
BLAST of Cla021253 vs. Swiss-Prot
Match: PLI2A_ARATH (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.0e-81
Identity = 144/214 (67.29%), Postives = 169/214 (78.97%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYV++LL+LEGN YHKSCF+C+HCKGTL +S+YS MDGVLYCK 
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDLQSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKV 120
           HFEQLFKESGN+SKNFQ  K +EK ND  +R PSKLSS FSGTQDKCA C KTVYPLEKV
Sbjct: 61  HFEQLFKESGNYSKNFQAGK-TEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKV 120

Query: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180
           T+EGE YHK CFRC H GC LTHSSYA+L+GVLYCK HF QLF+ KG+YNHV +AAAN +
Sbjct: 121 TMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANHR 180

Query: 181 ------ATTPPPEPAEEEEAEAEAQPQAEEAAVE 209
                   +PP +  + ++  +  + + ++AA E
Sbjct: 181 RSASSGGASPPSDDHKPDDTASIPEAKEDDAAPE 213

[Close]
BLAST of Cla021253 vs. Swiss-Prot
Match: WLI2A_ARATH (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 4.4e-72
Identity = 124/200 (62.00%), Postives = 159/200 (79.50%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGT  KC+AC+KTVY VELLS +G  YHK+CFKCSHCK  L +S+YS M+GV+YC+ 
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKESGNFSKNFQT-SKP-SEKQNDLQSRAPSKLSSMFSGTQDKCAVCSKTVYPLE 120
           HFEQLFKESG+FSKNFQ+ +KP ++K     +R PS+L+ MFSGTQDKCA C+KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAAN 180
           KVT+E +CYHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+YNH++++A+ 
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KKATTPPPEPAEEEEAEAEA 199
           K+AT      A    A  E+
Sbjct: 181 KRATAAATAAAAAVAAVPES 200

[Close]
BLAST of Cla021253 vs. Swiss-Prot
Match: WLI2B_ARATH (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.8e-70
Identity = 118/182 (64.84%), Postives = 151/182 (82.97%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGT  KCKAC+KTVY VELLS +G  YHKSCFKC+HCK  L +SSYS M+GVLYCK 
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQT-SKPSEKQNDLQSRAPSKLSSMFSGTQDKCAVCSKTVYPLEK 120
           HFEQLFKESG+F+KNFQ+ +K ++K     +R PS+++  FSGTQ+KCA CSKTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANK 180
           VT+E + YHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+YNH++++A+ K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 KA 182
           ++
Sbjct: 181 RS 182

[Close]
BLAST of Cla021253 vs. TrEMBL
Match: A0A0A0L4A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122620 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 8.5e-115
Identity = 199/210 (94.76%), Postives = 201/210 (95.71%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSC KCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCLKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDLQSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKV 120
           HFEQLFKESGNFSKNFQ +KPSEKQNDL SRAPSKLSSMFSGTQDKCA CSKTVYPLEKV
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDL-SRAPSKLSSMFSGTQDKCAACSKTVYPLEKV 120

Query: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180
           TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK
Sbjct: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180

Query: 181 ATTPPPEPAEEEEAEAEAQPQAEEAAVEQT 211
           A TPPPEPAEEEE   EAQPQA+EA VEQT
Sbjct: 181 APTPPPEPAEEEEGATEAQPQADEAPVEQT 209

[Close]
BLAST of Cla021253 vs. TrEMBL
Match: A0A0A0L6A8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122580 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 1.5e-100
Identity = 176/210 (83.81%), Postives = 192/210 (91.43%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           M+FTGTLDKCKACDKTVYVV+LL+LEGNPYHK+CFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDLQSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKV 120
           HFEQLFKESGNFSKNFQT K S+K NDL +R PSKLSSMFSGTQDKC+VC+KTVYPLEKV
Sbjct: 61  HFEQLFKESGNFSKNFQT-KSSDKPNDL-TRTPSKLSSMFSGTQDKCSVCTKTVYPLEKV 120

Query: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180
           +LEGECYHK CFRCAHGGCHLTH SYAALDGVLYCKHHFAQLFM+KGNYNHVLEAAANKK
Sbjct: 121 SLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFAQLFMVKGNYNHVLEAAANKK 180

Query: 181 ATTPPPEPAEEEEAEAEAQPQAEEAAVEQT 211
            TTP   PA+  + +AE  P++ E AVEQ+
Sbjct: 181 TTTP---PADHTDEDAEPSPRSGEQAVEQS 205

[Close]
BLAST of Cla021253 vs. TrEMBL
Match: V7B4U4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G067500g PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 3.0e-96
Identity = 163/204 (79.90%), Postives = 186/204 (91.18%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVV+LL+LEG PYHK+CF+CSHCKG L+MS+YS MDGVLYCK 
Sbjct: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGTPYHKNCFRCSHCKGCLTMSTYSSMDGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDLQSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKV 120
           HFEQLFKESGNFSKNFQT++ S+KQN++ ++ P++LSSMFSGT DKC+VCSKTVYPLEK+
Sbjct: 61  HFEQLFKESGNFSKNFQTARSSDKQNEV-NKTPNRLSSMFSGTLDKCSVCSKTVYPLEKM 120

Query: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180
           TLEGECYHKNCFRCAH GCHLTHSSYAALDGVLYC+HHF QLFM KGNY+HVL+AAAN+K
Sbjct: 121 TLEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCRHHFQQLFMEKGNYHHVLQAAANRK 180

Query: 181 ATTPPPEPAEEEEAEAEAQPQAEE 205
             TPPPEPAEEEEA    +P+ EE
Sbjct: 181 NATPPPEPAEEEEAPKPEEPEEEE 203

[Close]
BLAST of Cla021253 vs. TrEMBL
Match: G7L3J0_MEDTR (GATA type zinc finger transcription factor family protein OS=Medicago truncatula GN=MTR_7g076720 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 5.2e-96
Identity = 169/206 (82.04%), Postives = 185/206 (89.81%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVV+LL+LEG PYHKSC KC+HCKG L+MS+YS MDGVLYCK 
Sbjct: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKSCLKCTHCKGNLTMSTYSSMDGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDLQSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKV 120
           HFEQLFKESGNFSKNFQ +K SEK N+L +R PS+LSSMFSGT DKCAVC+KTVYPLEK+
Sbjct: 61  HFEQLFKESGNFSKNFQ-AKSSEKINELMNRTPSRLSSMFSGTLDKCAVCTKTVYPLEKM 120

Query: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180
           +LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHF QLFM KGNYNHVL+AAANKK
Sbjct: 121 SLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFQQLFMEKGNYNHVLQAAANKK 180

Query: 181 ATTPPPEPAEEEEAE--AEAQPQAEE 205
            +TPPPEPA+EEE     E + QAEE
Sbjct: 181 NSTPPPEPADEEEPSKPEETEAQAEE 205

[Close]
BLAST of Cla021253 vs. TrEMBL
Match: A0A0L9U419_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g053500 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 9.7e-95
Identity = 164/210 (78.10%), Postives = 187/210 (89.05%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVV+LL+LEG PYHK+CF+CSHCKG L+MS+YS MDGVLYCK 
Sbjct: 410 MSFTGTLDKCKACDKTVYVVDLLTLEGTPYHKNCFRCSHCKGYLTMSTYSSMDGVLYCKP 469

Query: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDLQSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKV 120
           HFEQLFKESGNFSKNFQT++ SEKQN++ ++ P++LSSMFSGT DKC+VCSKTVYPLEK+
Sbjct: 470 HFEQLFKESGNFSKNFQTARSSEKQNEM-NKTPNRLSSMFSGTLDKCSVCSKTVYPLEKM 529

Query: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180
           TLEGECYHK CFRCAH GCHLTHSSYA+LDGVLYC+HHF QLFM KGNY+HVL+AAAN+K
Sbjct: 530 TLEGECYHKTCFRCAHAGCHLTHSSYASLDGVLYCRHHFQQLFMEKGNYHHVLQAAANRK 589

Query: 181 ATTPPPEPAEEEEAEAEAQPQAEEAAVEQT 211
             TPPPEPAEEEE      P+ EEA  E+T
Sbjct: 590 NATPPPEPAEEEE-----PPKPEEAEQEET 613

[Close]
BLAST of Cla021253 vs. NCBI nr
Match: gi|778677275|ref|XP_004134333.2| (PREDICTED: LIM domain-containing protein PLIM2b-like isoform X1 [Cucumis sativus])

HSP 1 Score: 427.6 bits (1098), Expect = 1.3e-116
Identity = 200/210 (95.24%), Postives = 202/210 (96.19%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSC KCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCLKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDLQSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKV 120
           HFEQLFKESGNFSKNFQ +KPSEKQNDLQSRAPSKLSSMFSGTQDKCA CSKTVYPLEKV
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLQSRAPSKLSSMFSGTQDKCAACSKTVYPLEKV 120

Query: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180
           TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK
Sbjct: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180

Query: 181 ATTPPPEPAEEEEAEAEAQPQAEEAAVEQT 211
           A TPPPEPAEEEE   EAQPQA+EA VEQT
Sbjct: 181 APTPPPEPAEEEEGATEAQPQADEAPVEQT 210

[Close]
BLAST of Cla021253 vs. NCBI nr
Match: gi|659075311|ref|XP_008438077.1| (PREDICTED: pollen-specific protein SF3-like isoform X1 [Cucumis melo])

HSP 1 Score: 426.8 bits (1096), Expect = 2.2e-116
Identity = 201/210 (95.71%), Postives = 204/210 (97.14%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDLQSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKV 120
           HFEQLFKESGNFSKNFQ +KPSEKQNDLQSRAPSKLSSMFSGTQDKCA C+KTVYPLEKV
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLQSRAPSKLSSMFSGTQDKCAACTKTVYPLEKV 120

Query: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180
           TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK
Sbjct: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180

Query: 181 ATTPPPEPAEEEEAEAEAQPQAEEAAVEQT 211
           ATTPPPEPAEEEE   EAQPQA+E AVEQT
Sbjct: 181 ATTPPPEPAEEEEGATEAQPQADE-AVEQT 209

[Close]
BLAST of Cla021253 vs. NCBI nr
Match: gi|778677278|ref|XP_011650764.1| (PREDICTED: LIM domain-containing protein PLIM2b-like isoform X2 [Cucumis sativus])

HSP 1 Score: 421.0 bits (1081), Expect = 1.2e-114
Identity = 199/210 (94.76%), Postives = 201/210 (95.71%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSC KCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCLKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDLQSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKV 120
           HFEQLFKESGNFSKNFQ +KPSEKQNDL SRAPSKLSSMFSGTQDKCA CSKTVYPLEKV
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDL-SRAPSKLSSMFSGTQDKCAACSKTVYPLEKV 120

Query: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180
           TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK
Sbjct: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180

Query: 181 ATTPPPEPAEEEEAEAEAQPQAEEAAVEQT 211
           A TPPPEPAEEEE   EAQPQA+EA VEQT
Sbjct: 181 APTPPPEPAEEEEGATEAQPQADEAPVEQT 209

[Close]
BLAST of Cla021253 vs. NCBI nr
Match: gi|659075313|ref|XP_008438078.1| (PREDICTED: pollen-specific protein SF3-like isoform X2 [Cucumis melo])

HSP 1 Score: 420.2 bits (1079), Expect = 2.1e-114
Identity = 200/210 (95.24%), Postives = 203/210 (96.67%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDLQSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKV 120
           HFEQLFKESGNFSKNFQ +KPSEKQNDL SRAPSKLSSMFSGTQDKCA C+KTVYPLEKV
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDL-SRAPSKLSSMFSGTQDKCAACTKTVYPLEKV 120

Query: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180
           TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK
Sbjct: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180

Query: 181 ATTPPPEPAEEEEAEAEAQPQAEEAAVEQT 211
           ATTPPPEPAEEEE   EAQPQA+E AVEQT
Sbjct: 181 ATTPPPEPAEEEEGATEAQPQADE-AVEQT 208

[Close]
BLAST of Cla021253 vs. NCBI nr
Match: gi|659075295|ref|XP_008438068.1| (PREDICTED: pollen-specific protein SF3-like [Cucumis melo])

HSP 1 Score: 379.8 bits (974), Expect = 3.1e-102
Identity = 179/210 (85.24%), Postives = 193/210 (91.90%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           M+FTGTLDKCKACDKTVYVV+LL+LEGNPYHK+CFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDLQSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKV 120
           HFEQLFKESGNFSKNFQT KPSE+QNDL +R PSKLSSMF GTQDKC+VC+KTVYPLEKV
Sbjct: 61  HFEQLFKESGNFSKNFQT-KPSERQNDL-TRTPSKLSSMFCGTQDKCSVCTKTVYPLEKV 120

Query: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180
           TLEGECYHK CFRCAHGGCHLTH SYAALDGVLYCKHHFAQLFM+KGNYNHVLEAAANKK
Sbjct: 121 TLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFAQLFMVKGNYNHVLEAAANKK 180

Query: 181 ATTPPPEPAEEEEAEAEAQPQAEEAAVEQT 211
            TTP   PAE  + +AE  P++ E AVEQ+
Sbjct: 181 TTTP---PAEHTDEDAEPSPRSGEQAVEQS 205

The following BLAST results are available for this feature:
BLAST of Cla021253 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PLI2C_ARATH1.3e-8469.86LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana GN=PLIM2C PE=1 SV=1[more]
PLI2B_ARATH1.9e-8368.75LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana GN=PLIM2B PE=1 SV=1[more]
PLI2A_ARATH1.0e-8167.29LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana GN=PLIM2A PE=1 SV=1[more]
WLI2A_ARATH4.4e-7262.00LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana GN=WLIN2A PE=1 SV=1[more]
WLI2B_ARATH1.8e-7064.84LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana GN=WLIM2B PE=1 SV=1[more]
BLAST of Cla021253 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4A1_CUCSA8.5e-11594.76Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122620 PE=4 SV=1[more]
A0A0A0L6A8_CUCSA1.5e-10083.81Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122580 PE=4 SV=1[more]
V7B4U4_PHAVU3.0e-9679.90Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G067500g PE=4 SV=1[more]
G7L3J0_MEDTR5.2e-9682.04GATA type zinc finger transcription factor family protein OS=Medicago truncatula... [more]
A0A0L9U419_PHAAN9.7e-9578.10Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g053500 PE=4 SV=1[more]
BLAST of Cla021253 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778677275|ref|XP_004134333.2|1.3e-11695.24PREDICTED: LIM domain-containing protein PLIM2b-like isoform X1 [Cucumis sativus... [more]
gi|659075311|ref|XP_008438077.1|2.2e-11695.71PREDICTED: pollen-specific protein SF3-like isoform X1 [Cucumis melo][more]
gi|778677278|ref|XP_011650764.1|1.2e-11494.76PREDICTED: LIM domain-containing protein PLIM2b-like isoform X2 [Cucumis sativus... [more]
gi|659075313|ref|XP_008438078.1|2.1e-11495.24PREDICTED: pollen-specific protein SF3-like isoform X2 [Cucumis melo][more]
gi|659075295|ref|XP_008438068.1|3.1e-10285.24PREDICTED: pollen-specific protein SF3-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla021253Cla021253.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeGENE3DG3DSA:2.10.110.10coord: 4..71
score: 1.8E-21coord: 100..169
score: 5.7
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 107..162
score: 2.1E-10coord: 10..65
score: 3.4
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 106..158
score: 7.2E-13coord: 9..61
score: 1.1
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 10..44
scor
IPR001781Zinc finger, LIM-typePROFILEPS50023LIM_DOMAIN_2coord: 8..68
score: 13.484coord: 105..165
score: 12
NoneNo IPR availablePANTHERPTHR24206FAMILY NOT NAMEDcoord: 1..209
score: 2.3E
NoneNo IPR availablePANTHERPTHR24206:SF22PROTEIN PLIM2Acoord: 1..209
score: 2.3E
NoneNo IPR availableunknownSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 36..76
score: 6.55E-15coord: 99..132
score: 1.85E-9coord: 3..35
score: 9.02E-9coord: 133..172
score: 7.61