Cla021135 (gene) Watermelon (97103) v1

NameCla021135
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionReceptor-like kinase (AHRD V1 ***- C0SW33_SOYBN); contains Interpro domain(s) IPR000719 Protein kinase, core
LocationChr5 : 685770 .. 686144 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATCCAAAGTATCTTACTTTGGCTTAGTAAAAAATGCGCCCGATGGGCAATACTCCAGGAAGACACAAGTGGCTGGAACTTTCAGCTATCTAGCTCCTAAATATGCAGGTAAATGAGTTGAATTTATTTATTTTTATTATTATTTTCCTTTTAATTAATTTTTTTCAATATTTTTCCTAACAGCAACCGGAAGAGTGAGTACGAAGGTGGATATTTACACCATTGGGGTCATTTTGATGGAACACATCACAAGAAGGAAGGCCGTAGACAACTCCTTGGGAGAAGACAGACATAGTCTCTTTATGTGGTTTCGCCAAGTTAAACAAAACGAGCAAGATTTTCTCAATAAAATTAATGTGCCATTGACTTAG

mRNA sequence

ATGAGATCCAAAGTATCTTACTTTGGCTTAGTAAAAAATGCGCCCGATGGGCAATACTCCAGGAAGACACAAGTGGCTGGAACTTTCAGCTATCTAGCTCCTAAATATGCAGCAACCGGAAGAGTGAGTACGAAGGTGGATATTTACACCATTGGGGTCATTTTGATGGAACACATCACAAGAAGGAAGGCCGTAGACAACTCCTTGGGAGAAGACAGACATAGTCTCTTTATGTGGTTTCGCCAAGTTAAACAAAACGAGCAAGATTTTCTCAATAAAATTAATGTGCCATTGACTTAG

Coding sequence (CDS)

ATGAGATCCAAAGTATCTTACTTTGGCTTAGTAAAAAATGCGCCCGATGGGCAATACTCCAGGAAGACACAAGTGGCTGGAACTTTCAGCTATCTAGCTCCTAAATATGCAGCAACCGGAAGAGTGAGTACGAAGGTGGATATTTACACCATTGGGGTCATTTTGATGGAACACATCACAAGAAGGAAGGCCGTAGACAACTCCTTGGGAGAAGACAGACATAGTCTCTTTATGTGGTTTCGCCAAGTTAAACAAAACGAGCAAGATTTTCTCAATAAAATTAATGTGCCATTGACTTAG

Protein sequence

MRSKVSYFGLVKNAPDGQYSRKTQVAGTFSYLAPKYAATGRVSTKVDIYTIGVILMEHITRRKAVDNSLGEDRHSLFMWFRQVKQNEQDFLNKINVPLT
BLAST of Cla021135 vs. Swiss-Prot
Match: TMK4_ARATH (Receptor-like kinase TMK4 OS=Arabidopsis thaliana GN=TMK4 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-26
Identity = 58/97 (59.79%), Postives = 75/97 (77.32%), Query Frame = 1

Query: 1   MRSKVSYFGLVKNAPDGQYSRKTQVAGTFSYLAPKYAATGRVSTKVDIYTIGVILMEHIT 60
           MR+KV+ FGLVKNAPDG+YS +T++AGTF YLAP+YAATGRV+TKVD+Y  GV+LME +T
Sbjct: 719 MRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMEILT 778

Query: 61  RRKAVDNSLGEDRHSLFMWFRQVKQNEQDFLNKINVP 98
            RKA+D+SL ++R  L  WFR++       +NK N+P
Sbjct: 779 GRKALDDSLPDERSHLVTWFRRI------LINKENIP 809

BLAST of Cla021135 vs. Swiss-Prot
Match: TMK3_ARATH (Receptor-like kinase TMK3 OS=Arabidopsis thaliana GN=TMK3 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.7e-24
Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 1

Query: 1   MRSKVSYFGLVKNAPDGQYSRKTQVAGTFSYLAPKYAATGRVSTKVDIYTIGVILMEHIT 60
           MR+KVS FGLV+ APDG+YS +T+VAGTF YLAP+YA TGRV+TKVDI+++GVILME IT
Sbjct: 726 MRAKVSDFGLVRLAPDGKYSIETRVAGTFGYLAPEYAVTGRVTTKVDIFSLGVILMELIT 785

Query: 61  RRKAVDNSLGEDRHSLFMWFRQV--KQNEQDFLNKIN 96
            RKA+D +  ED   L  WFR+V   ++E  F N I+
Sbjct: 786 GRKALDETQPEDSVHLVTWFRRVAASKDENAFKNAID 822

BLAST of Cla021135 vs. Swiss-Prot
Match: TMK1_ARATH (Receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.8e-21
Identity = 50/93 (53.76%), Postives = 68/93 (73.12%), Query Frame = 1

Query: 1   MRSKVSYFGLVKNAPDGQYSRKTQVAGTFSYLAPKYAATGRVSTKVDIYTIGVILMEHIT 60
           MR+KV+ FGLV+ AP+G+ S +T++AGTF YLAP+YA TGRV+TKVD+Y+ GVILME IT
Sbjct: 729 MRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMELIT 788

Query: 61  RRKAVDNSLGEDRHSLFMWFRQVKQNEQDFLNK 94
            RK++D S  E+   L  WF+++  N++    K
Sbjct: 789 GRKSLDESQPEESIHLVSWFKRMYINKEASFKK 821

BLAST of Cla021135 vs. Swiss-Prot
Match: TMK2_ARATH (Receptor-like kinase TMK2 OS=Arabidopsis thaliana GN=TMK2 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-20
Identity = 50/95 (52.63%), Postives = 67/95 (70.53%), Query Frame = 1

Query: 1   MRSKVSYFGLVKNAPDGQYSRKTQVAGTFSYLAPKYAATGRVSTKVDIYTIGVILMEHIT 60
           M +KV+ FGLV+ AP+G  S +T++AGTF YLAP+YA TGRV+TKVD+Y+ GVILME +T
Sbjct: 688 MHAKVADFGLVRLAPEGTQSIETKIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMELLT 747

Query: 61  RRKAVDNSLGEDRHSLFMWFRQVKQNEQDFLNKIN 96
            RKA+D +  E+   L  WFR++  N+  F   I+
Sbjct: 748 GRKALDVARSEEEVHLATWFRRMFINKGSFPKAID 782

BLAST of Cla021135 vs. Swiss-Prot
Match: CDL1_ARATH (Serine/threonine-protein kinase CDL1 OS=Arabidopsis thaliana GN=CDL1 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-13
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 1

Query: 4   KVSYFGLVKNAPDGQYSR-KTQVAGTFSYLAPKYAATGRVSTKVDIYTIGVILMEHITRR 63
           K+S FGL K  P G  S   T+V GT+ Y AP+YA TG+++ K D+Y+ GV+L+E IT R
Sbjct: 215 KLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGR 274

Query: 64  KAVDNSLGEDRHSLFMWFRQVKQNEQDF 91
           KA+D+S      +L  W R + ++ + F
Sbjct: 275 KAIDSSRSTGEQNLVAWARPLFKDRRKF 302

BLAST of Cla021135 vs. TrEMBL
Match: A0A067K8Y9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13142 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.0e-25
Identity = 58/98 (59.18%), Postives = 79/98 (80.61%), Query Frame = 1

Query: 1   MRSKVSYFGLVKNAPDGQYSRKTQVAGTFSYLAPKYAATGRVSTKVDIYTIGVILMEHIT 60
           MR+KV+ FGLV+NAPDG+YS +T++AGTF YLAP+YAATGRV+TKVD+Y  GV+LME IT
Sbjct: 710 MRAKVADFGLVRNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMEMIT 769

Query: 61  RRKAVDNSLGEDRHSLFMWFRQVKQNEQDFLNKINVPL 99
            RKA+++SLG+++  L  WFR+V       +NK N+P+
Sbjct: 770 GRKALEDSLGDEKSHLVSWFRRV------LINKDNIPM 801

BLAST of Cla021135 vs. TrEMBL
Match: A0A059ATK3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00009 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.0e-25
Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 1

Query: 1   MRSKVSYFGLVKNAPDGQYSRKTQVAGTFSYLAPKYAATGRVSTKVDIYTIGVILMEHIT 60
           MR+KV+ FGLVKNAPDG+YS +T++AGTF YLAP+YAATGRV+TKVDIY  GV+LME +T
Sbjct: 717 MRAKVADFGLVKNAPDGKYSLETRLAGTFGYLAPEYAATGRVTTKVDIYAFGVVLMEILT 776

Query: 61  RRKAVDNSLGEDRHSLFMWFRQVKQNEQDFLNKINVP 98
            RKA+D+S+ +DR  L  WFR+V       +NK N+P
Sbjct: 777 GRKALDDSMPDDRAHLVTWFRRV------LINKENIP 807

BLAST of Cla021135 vs. TrEMBL
Match: V4L4R0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10002394mg PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.5e-25
Identity = 59/97 (60.82%), Postives = 77/97 (79.38%), Query Frame = 1

Query: 1   MRSKVSYFGLVKNAPDGQYSRKTQVAGTFSYLAPKYAATGRVSTKVDIYTIGVILMEHIT 60
           MR+KV+ FGLVKNAPDG+YS +T++AGTF YLAP+YAATGRV+TKVD+Y  GV+LME IT
Sbjct: 720 MRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMEMIT 779

Query: 61  RRKAVDNSLGEDRHSLFMWFRQVKQNEQDFLNKINVP 98
            RKA+D+SL ++R  L  WFR++       +NK N+P
Sbjct: 780 GRKALDDSLPDERSHLVTWFRRI------LINKDNIP 810

BLAST of Cla021135 vs. TrEMBL
Match: A0A0D3AB23_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.5e-25
Identity = 59/97 (60.82%), Postives = 77/97 (79.38%), Query Frame = 1

Query: 1   MRSKVSYFGLVKNAPDGQYSRKTQVAGTFSYLAPKYAATGRVSTKVDIYTIGVILMEHIT 60
           MR+KV+ FGLVKNAPDG+YS +T++AGTF YLAP+YAATGRV+TKVD+Y  GV+LME IT
Sbjct: 723 MRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMEMIT 782

Query: 61  RRKAVDNSLGEDRHSLFMWFRQVKQNEQDFLNKINVP 98
            RKA+D+SL ++R  L  WFR++       +NK N+P
Sbjct: 783 GRKALDDSLPDERSHLVTWFRRI------LINKENIP 813

BLAST of Cla021135 vs. TrEMBL
Match: M4EHS7_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.5e-25
Identity = 59/97 (60.82%), Postives = 77/97 (79.38%), Query Frame = 1

Query: 1   MRSKVSYFGLVKNAPDGQYSRKTQVAGTFSYLAPKYAATGRVSTKVDIYTIGVILMEHIT 60
           MR+KV+ FGLVKNAPDG+YS +T++AGTF YLAP+YAATGRV+TKVD+Y  GV+LME IT
Sbjct: 723 MRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMEMIT 782

Query: 61  RRKAVDNSLGEDRHSLFMWFRQVKQNEQDFLNKINVP 98
            RKA+D+SL ++R  L  WFR++       +NK N+P
Sbjct: 783 GRKALDDSLPDERSHLVTWFRRI------LINKENIP 813

BLAST of Cla021135 vs. NCBI nr
Match: gi|702431504|ref|XP_010068984.1| (PREDICTED: probable receptor protein kinase TMK1 [Eucalyptus grandis])

HSP 1 Score: 121.7 bits (304), Expect = 7.2e-25
Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 1

Query: 1   MRSKVSYFGLVKNAPDGQYSRKTQVAGTFSYLAPKYAATGRVSTKVDIYTIGVILMEHIT 60
           MR+KV+ FGLVKNAPDG+YS +T++AGTF YLAP+YAATGRV+TKVDIY  GV+LME +T
Sbjct: 717 MRAKVADFGLVKNAPDGKYSLETRLAGTFGYLAPEYAATGRVTTKVDIYAFGVVLMEILT 776

Query: 61  RRKAVDNSLGEDRHSLFMWFRQVKQNEQDFLNKINVP 98
            RKA+D+S+ +DR  L  WFR+V       +NK N+P
Sbjct: 777 GRKALDDSMPDDRAHLVTWFRRV------LINKENIP 807

BLAST of Cla021135 vs. NCBI nr
Match: gi|729318818|ref|XP_010532727.1| (PREDICTED: probable receptor protein kinase TMK1 [Tarenaya hassleriana])

HSP 1 Score: 121.7 bits (304), Expect = 7.2e-25
Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 1

Query: 1   MRSKVSYFGLVKNAPDGQYSRKTQVAGTFSYLAPKYAATGRVSTKVDIYTIGVILMEHIT 60
           MR+KV+ FGLVKNAPDG+YS +T++AGTF YLAP+YAATGRV+TKVD+Y  GV+LME IT
Sbjct: 723 MRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMEMIT 782

Query: 61  RRKAVDNSLGEDRHSLFMWFRQVKQNEQDFLNKINVP 98
            RKA+D+SL ++R  L  WFR++       +NK NVP
Sbjct: 783 GRKALDDSLPDERSHLVTWFRRI------LINKENVP 813

BLAST of Cla021135 vs. NCBI nr
Match: gi|643722895|gb|KDP32592.1| (hypothetical protein JCGZ_13142 [Jatropha curcas])

HSP 1 Score: 121.7 bits (304), Expect = 7.2e-25
Identity = 58/98 (59.18%), Postives = 79/98 (80.61%), Query Frame = 1

Query: 1   MRSKVSYFGLVKNAPDGQYSRKTQVAGTFSYLAPKYAATGRVSTKVDIYTIGVILMEHIT 60
           MR+KV+ FGLV+NAPDG+YS +T++AGTF YLAP+YAATGRV+TKVD+Y  GV+LME IT
Sbjct: 710 MRAKVADFGLVRNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMEMIT 769

Query: 61  RRKAVDNSLGEDRHSLFMWFRQVKQNEQDFLNKINVPL 99
            RKA+++SLG+++  L  WFR+V       +NK N+P+
Sbjct: 770 GRKALEDSLGDEKSHLVSWFRRV------LINKDNIPM 801

BLAST of Cla021135 vs. NCBI nr
Match: gi|923677811|ref|XP_013652639.1| (PREDICTED: receptor-like kinase TMK4 [Brassica napus])

HSP 1 Score: 121.3 bits (303), Expect = 9.4e-25
Identity = 59/97 (60.82%), Postives = 77/97 (79.38%), Query Frame = 1

Query: 1   MRSKVSYFGLVKNAPDGQYSRKTQVAGTFSYLAPKYAATGRVSTKVDIYTIGVILMEHIT 60
           MR+KV+ FGLVKNAPDG+YS +T++AGTF YLAP+YAATGRV+TKVD+Y  GV+LME IT
Sbjct: 723 MRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMEMIT 782

Query: 61  RRKAVDNSLGEDRHSLFMWFRQVKQNEQDFLNKINVP 98
            RKA+D+SL ++R  L  WFR++       +NK N+P
Sbjct: 783 GRKALDDSLPDERSHLVTWFRRI------LINKENIP 813

BLAST of Cla021135 vs. NCBI nr
Match: gi|567158813|ref|XP_006418841.1| (hypothetical protein EUTSA_v10002394mg [Eutrema salsugineum])

HSP 1 Score: 121.3 bits (303), Expect = 9.4e-25
Identity = 59/97 (60.82%), Postives = 77/97 (79.38%), Query Frame = 1

Query: 1   MRSKVSYFGLVKNAPDGQYSRKTQVAGTFSYLAPKYAATGRVSTKVDIYTIGVILMEHIT 60
           MR+KV+ FGLVKNAPDG+YS +T++AGTF YLAP+YAATGRV+TKVD+Y  GV+LME IT
Sbjct: 720 MRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMEMIT 779

Query: 61  RRKAVDNSLGEDRHSLFMWFRQVKQNEQDFLNKINVP 98
            RKA+D+SL ++R  L  WFR++       +NK N+P
Sbjct: 780 GRKALDDSLPDERSHLVTWFRRI------LINKDNIP 810

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TMK4_ARATH1.3e-2659.79Receptor-like kinase TMK4 OS=Arabidopsis thaliana GN=TMK4 PE=1 SV=1[more]
TMK3_ARATH2.7e-2460.82Receptor-like kinase TMK3 OS=Arabidopsis thaliana GN=TMK3 PE=2 SV=1[more]
TMK1_ARATH4.8e-2153.76Receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1[more]
TMK2_ARATH1.4e-2052.63Receptor-like kinase TMK2 OS=Arabidopsis thaliana GN=TMK2 PE=2 SV=1[more]
CDL1_ARATH4.8e-1343.18Serine/threonine-protein kinase CDL1 OS=Arabidopsis thaliana GN=CDL1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A067K8Y9_JATCU5.0e-2559.18Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13142 PE=3 SV=1[more]
A0A059ATK3_EUCGR5.0e-2561.86Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00009 PE=3 SV=1[more]
V4L4R0_EUTSA6.5e-2560.82Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10002394mg PE=3 SV=1[more]
A0A0D3AB23_BRAOL6.5e-2560.82Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1[more]
M4EHS7_BRARP6.5e-2560.82Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1[more]
Match NameE-valueIdentityDescription
gi|702431504|ref|XP_010068984.1|7.2e-2561.86PREDICTED: probable receptor protein kinase TMK1 [Eucalyptus grandis][more]
gi|729318818|ref|XP_010532727.1|7.2e-2561.86PREDICTED: probable receptor protein kinase TMK1 [Tarenaya hassleriana][more]
gi|643722895|gb|KDP32592.1|7.2e-2559.18hypothetical protein JCGZ_13142 [Jatropha curcas][more]
gi|923677811|ref|XP_013652639.1|9.4e-2560.82PREDICTED: receptor-like kinase TMK4 [Brassica napus][more]
gi|567158813|ref|XP_006418841.1|9.4e-2560.82hypothetical protein EUTSA_v10002394mg [Eutrema salsugineum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005524 ATP binding
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0004672 protein kinase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla021135Cla021135.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000719Protein kinase domainPFAMPF00069Pkinasecoord: 4..73
score: 1.
IPR000719Protein kinase domainPROFILEPS50011PROTEIN_KINASE_DOMcoord: 1..99
score: 11
IPR011009Protein kinase-like domainunknownSSF56112Protein kinase-like (PK-like)coord: 3..82
score: 1.63
NoneNo IPR availableGENE3DG3DSA:1.10.510.10coord: 3..84
score: 6.5
NoneNo IPR availablePANTHERPTHR27001FAMILY NOT NAMEDcoord: 1..83
score: 1.2
NoneNo IPR availablePANTHERPTHR27001:SF172GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MYM9coord: 1..83
score: 1.2