Cla021127 (gene) Watermelon (97103) v1

Overview
NameCla021127
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 641055 .. 642878 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAACAACCCCACCTCAGTCGCCGGCCAAGTCCCGGCGCATACAGACGCCGCCGCTTTCTCCTCTTGCTCTGCCACGTTCCCAAGTCTCCTCCGGGAATGGGACTACGACTCAGCCCAGGTATTATATTAATCACCATTGAACACAACTTTGTTAAAATCTTATTTATCTTAAATCATGACTTGAAACGAATGTGACGATGATCTATATAATAAAGATTAGAATATGACAGTGTCAAAAATTAATGAATTAAAATTGATATGGATATAGACCAAAATACTACCAAAACTCAAATCTAAGGTAAAAGGCGAGGTTTGAAAATTTCAGCACCAAATTACTTCTTTAAGCTCCCCTAATTTTAAAGAGGAAAATGATATTACCAAAATTCTAGAACAAGAAATCTTTTGCTTTGGTACTATATATTAATCACTATTGAATCCAAAAATTTAAGTTGGTGGGATAGAGTAAATTTAATCATACCAATACTTCAACAAAATGATAATATATTTTAAAAAGTGGTTTTTTTTTTTTTTTTTTTTTACTTGCAAAGTAAAAAGATGACTATTTGAATTTTTCTTGTAATCATTTTTTAACTCTCCCGAAATCGTTTTCAAATGAAGACAAACTCATAATTTAGTTGAGATGTTGAAATCTTTACCCACTTATTATTGTTTTCTTTTATATCAATAATATAAACTTTATGTCATTGGATTATTTTGACATGTTGTTCTACGGATTGATGGTTGCAACGAAAAACAATTAAAAAAAGAAATACTTATTTCATCCTAAGCTATACCAATGACATTCCACTCCATTGTCTAGTTACACGGCAAACACTTCTTACTTATTTTTTAAAAATGCCTTTTCTTTATAGTAGTAGTCGATGTAGCCGAGCTGCATCCATGTTCCTAAGCTCTATCCAATTACATAGAAAACAAAAAAGATATATTAAAAAGAAGTTTTGTTGTAGAGCAAATTATTATTAGACTATTGAATGAGTTACATACATAAGTTTCAGGCTCTTTTCAAATATAGCAAAAAAATCAAAATATTTAAAAATATAGCAAAATTTTATTGTCTATCGAATCTAGATAGTAGTCTATCGTAAAATTTCACTGTCTATTAGACAATGATAATAGTCTATCATAATCTACTGAAGATAGACGGTGTATTTTGCTATTTGTTGTAAATATTTTTGGTAATTTTGTTATTTAAGATAATTTCATGTATAAATTATTTTATTTTTTTTTAATTAGGGTGATGCACTCAATTATTGCTTTTCTGACCATAATTAACAAATTTATTATTTTTATTATTATTATAAAAAAGACCGAAATTTTGATTTATATCGTCAATACAGGATTCAACCGCAGGTAGAGACGAAAGGCATTGTGTACAACAAGGCCGTTGAGAAGCCGGGGAAGTCTGATCGGCCATATGAGTACGGCTCGGGCAAGCCACACCAAAAGCAGCAGCAGGCGGCGGAGGTTATAAATCTCAACGGACATAACGTTGGCGCCGTCATGGAAATAAATAAGTCATCCGACGGCTACCGTTTGGGCAGAGAAACCGTAAAAAAGAACGAAACAGAAGGCGGCGGCGGCCGCCATGGACATGAAGAGAAGAAAATGGGGGCAAAGAAGGGACTGCCGATGACCGCATTTATGAACAGTAACTTTCAGAGTGTAAACAATTCGGTTCTGTACGACTCGTCGTGCAACCACCGTGATCCCGGCCTGCATCTCGCGTTTTCCGATGCGGCGGACGGCGACGGAGCCACTGTTGACGGCCACAAAACTTACAAGCCCAAACCCCAGTGA

mRNA sequence

ATGGGGAAACAACCCCACCTCAGTCGCCGGCCAAGTCCCGGCGCATACAGACGCCGCCGCTTTCTCCTCTTGCTCTGCCACGTTCCCAAGTCTCCTCCGGGAATGGGACTACGACTCAGCCCAGAGACGAAAGGCATTGTGTACAACAAGGCCGTTGAGAAGCCGGGGAAGTCTGATCGGCCATATGAGTACGGCTCGGGCAAGCCACACCAAAAGCAGCAGCAGGCGGCGGAGGTTATAAATCTCAACGGACATAACGTTGGCGCCGTCATGGAAATAAATAAGTCATCCGACGGCTACCGTTTGGGCAGAGAAACCGTAAAAAAGAACGAAACAGAAGGCGGCGGCGGCCGCCATGGACATGAAGAGAAGAAAATGGGGGCAAAGAAGGGACTGCCGATGACCGCATTTATGAACAGTAACTTTCAGAGTGTAAACAATTCGGTTCTGTACGACTCGTCGTGCAACCACCGTGATCCCGGCCTGCATCTCGCGTTTTCCGATGCGGCGGACGGCGACGGAGCCACTGTTGACGGCCACAAAACTTACAAGCCCAAACCCCAGTGA

Coding sequence (CDS)

ATGGGGAAACAACCCCACCTCAGTCGCCGGCCAAGTCCCGGCGCATACAGACGCCGCCGCTTTCTCCTCTTGCTCTGCCACGTTCCCAAGTCTCCTCCGGGAATGGGACTACGACTCAGCCCAGAGACGAAAGGCATTGTGTACAACAAGGCCGTTGAGAAGCCGGGGAAGTCTGATCGGCCATATGAGTACGGCTCGGGCAAGCCACACCAAAAGCAGCAGCAGGCGGCGGAGGTTATAAATCTCAACGGACATAACGTTGGCGCCGTCATGGAAATAAATAAGTCATCCGACGGCTACCGTTTGGGCAGAGAAACCGTAAAAAAGAACGAAACAGAAGGCGGCGGCGGCCGCCATGGACATGAAGAGAAGAAAATGGGGGCAAAGAAGGGACTGCCGATGACCGCATTTATGAACAGTAACTTTCAGAGTGTAAACAATTCGGTTCTGTACGACTCGTCGTGCAACCACCGTGATCCCGGCCTGCATCTCGCGTTTTCCGATGCGGCGGACGGCGACGGAGCCACTGTTGACGGCCACAAAACTTACAAGCCCAAACCCCAGTGA

Protein sequence

MGKQPHLSRRPSPGAYRRRRFLLLLCHVPKSPPGMGLRLSPETKGIVYNKAVEKPGKSDRPYEYGSGKPHQKQQQAAEVINLNGHNVGAVMEINKSSDGYRLGRETVKKNETEGGGGRHGHEEKKMGAKKGLPMTAFMNSNFQSVNNSVLYDSSCNHRDPGLHLAFSDAADGDGATVDGHKTYKPKPQ
Homology
[Close]
BLAST of Cla021127 vs. TrEMBL
Match: A0A0A0L320_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119300 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 6.1e-48
Identity = 101/148 (68.24%), Postives = 117/148 (79.05%), Query Frame = 1 

Query: 42  ETKGIVYNKAV-EKPGKSDRPYEYGSGKPHQKQQQAAEVINLNGHNVGAVMEINKSSDGY 101
           ETKGIVYNKA  EKP KS+R  E+GSGK   ++QQ   V+ L GHNVGAVME+NKSS GY
Sbjct: 145 ETKGIVYNKAADEKPSKSNRQSEHGSGKSVHQKQQKPGVMKLKGHNVGAVMEVNKSSAGY 204

Query: 102 RLGRETVKKNETEGGGG--RHGHEEKKMGAKKGLPMTAFMNSNFQSVNNSVLYDSSCNHR 161
           RLG ET+KK ETE  G    +GHE+KK G KK  P++AFMNSNFQSVNNS+L+DSSC HR
Sbjct: 205 RLGGETLKKKETEDDGDVDGYGHEDKKTGRKKKPPISAFMNSNFQSVNNSLLFDSSCQHR 264

Query: 162 DPGLHLAFSDAADGDGATVDGHKTYKPK 187
           DPGLHL+F +AADG GA VDG K+YKPK
Sbjct: 265 DPGLHLSFPNAADGGGAVVDGDKSYKPK 292

[Close]
BLAST of Cla021127 vs. TrEMBL
Match: A0A0A0L5T3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.2e-23
Identity = 72/156 (46.15%), Postives = 91/156 (58.33%), Query Frame = 1 

Query: 29  PKSPPGMGLRLSPETKGIVYNKAV-EKPGKSD---RPYEYGSGKPHQKQQQA---AEVIN 88
           P+SPP +      E K I+Y     EKP K+D   +  EYG+ KP QKQQ     ++VIN
Sbjct: 160 PRSPPEI------EQKKILYQTTTTEKPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVIN 219

Query: 89  LNGHNVGAVMEINKSSDGYRLGRETVKKNETEGGGGRHGHEEKKMGAKKGLPMTAFMNSN 148
           + G NVGAVM I +SSDG     E +KK  T G    +  EEK   +    P  +FMNSN
Sbjct: 220 IKGENVGAVMHITQSSDG----SEVIKKKPTVGQSKEN--EEKTNKSNSNYPGKSFMNSN 279

Query: 149 FQSVNNSVLYDSSCNHRDPGLHLAFSDAADGDGATV 178
           FQ VNNS+LY+SS +HRDPGLHLAF       G ++
Sbjct: 280 FQGVNNSILYNSSLSHRDPGLHLAFGSKKSKHGDSI 303

[Close]
BLAST of Cla021127 vs. TrEMBL
Match: A0A0A0L3R5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119280 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.4e-20
Identity = 69/163 (42.33%), Postives = 86/163 (52.76%), Query Frame = 1 

Query: 29  PKSPPGMGLRLSPETK---GIVYNKAVEKPGKSDRPYEYGSGKPHQKQQQAAEVINLNGH 88
           PK  P    R SPE K   GI +   VEK  KSDR +E        K Q     IN+ G 
Sbjct: 104 PKYKPNTQPR-SPEAKQKPGIFHKSTVEKVTKSDRYHESSKTLSSHKGQLQPNAINIKGE 163

Query: 89  NVGAVMEINKSSDGYRLGRETVKKNETEGGGGRHGHE-------EKKMGAKKGLPMTAFM 148
           NVGAVMEI +SS   R G   +KK +    G  + ++       E        +P   F+
Sbjct: 164 NVGAVMEIVESSK--REGGHMIKKIKETARGILNNNDMANDQNNEASKAPNSSMPTNTFL 223

Query: 149 NSNFQSVNNSVLYDSSCNHRDPGLHLAFSDAADGDGATVDGHK 182
           NSNFQSVNNS+LY+++  HRDPGLHLAFS    G+ + VD HK
Sbjct: 224 NSNFQSVNNSLLYNANLTHRDPGLHLAFSRNPTGERSGVDDHK 263

[Close]
BLAST of Cla021127 vs. TrEMBL
Match: A0A0A0L8G8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119310 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.6e-19
Identity = 64/128 (50.00%), Postives = 78/128 (60.94%), Query Frame = 1 

Query: 57  KSDRPYEYGSGKPHQKQQQAAEVINLNGHNVGAVMEINKSSDGYRLGRETVKKNETEGGG 116
           KSDR  +  S KP    Q  A+ INL G N+GAVM+IN+ SD    G E  +K ET+ G 
Sbjct: 158 KSDRQVDNVSAKPPPSLQ--AKAINLTGDNIGAVMKINQFSDKIS-GGEVTRKIETKTGV 217

Query: 117 GRHGHEEKKMGAKKGLPMTAFMNSNFQSVNNSVLYDSSCNHRDPGLHLAFSDAADGDGAT 176
            +    EK     +  PMT   NSNFQ VNNSV+Y+SSC+ RDPGLHL FS   D + AT
Sbjct: 218 QQENDMEKSRRETE-FPMTPITNSNFQEVNNSVMYNSSCSGRDPGLHLDFSGQKD-EAAT 277

Query: 177 VDGHKTYK 185
           VDG+K  K
Sbjct: 278 VDGNKKSK 280

[Close]
BLAST of Cla021127 vs. TrEMBL
Match: K4CLW3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.9e-13
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 1 

Query: 79  VINLNGHNVGAVMEINKSSDGYR----LGRETVKKNETEGGGGRHGHEEKKMGAK---KG 138
           V+ L G N GA+ME++ S   Y       + + K   +E  G + G E  + G K   K 
Sbjct: 319 VLTLAGENKGAIMELSPSRKTYSPRSLQNKGSPKSWSSEDDGEKSGSESGRKGDKMQNKS 378

Query: 139 LPMTAFMNSNFQSVNNSVLYDSSCNHRDPGLHLAFSDAADG 173
           LPMTAFMNSN Q +NNS+L+++SC H DPG+HL FS   +G
Sbjct: 379 LPMTAFMNSNVQGINNSILHNASCTHHDPGVHLVFSRKTNG 419

[Close]
BLAST of Cla021127 vs. NCBI nr
Match: gi|659074890|ref|XP_008437851.1| (PREDICTED: serine/arginine repetitive matrix protein 1-like [Cucumis melo])

HSP 1 Score: 210.3 bits (534), Expect = 2.9e-51
Identity = 112/151 (74.17%), Postives = 121/151 (80.13%), Query Frame = 1 

Query: 42  ETKGIVYNKAVEKPGKSDRPY-EYGSGKPHQKQQQAAEVINLNGHNVGAVMEINKSSDGY 101
           ETKGIVYNK VEKP KS+R   EYGS K HQK+Q+  EVI L GHNVGAVMEINKSS GY
Sbjct: 153 ETKGIVYNKTVEKPSKSNRSSGEYGSSKSHQKKQKP-EVIKLKGHNVGAVMEINKSSTGY 212

Query: 102 RLGRETVKKNETEGGGGRHG--HEEKKMGAKKGLP-MTAFMNSNFQSVNNSVLYDSSCNH 161
           RLG ET+KKNETE  G  HG  HE+KK   KK  P +TAFMNSNFQSVNNS+L+DSSCNH
Sbjct: 213 RLGGETLKKNETEDVGDVHGYGHEDKKTETKKKEPPITAFMNSNFQSVNNSLLFDSSCNH 272

Query: 162 RDPGLHLAFSDAADGDGATVDGHKTYKPKPQ 189
           RDPGLHLAF DA DGDGA VDG K+YKPK Q
Sbjct: 273 RDPGLHLAFPDAVDGDGAIVDGQKSYKPKRQ 302

[Close]
BLAST of Cla021127 vs. NCBI nr
Match: gi|449432018|ref|XP_004133797.1| (PREDICTED: atherin-like [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 8.8e-48
Identity = 101/148 (68.24%), Postives = 117/148 (79.05%), Query Frame = 1 

Query: 42  ETKGIVYNKAV-EKPGKSDRPYEYGSGKPHQKQQQAAEVINLNGHNVGAVMEINKSSDGY 101
           ETKGIVYNKA  EKP KS+R  E+GSGK   ++QQ   V+ L GHNVGAVME+NKSS GY
Sbjct: 145 ETKGIVYNKAADEKPSKSNRQSEHGSGKSVHQKQQKPGVMKLKGHNVGAVMEVNKSSAGY 204

Query: 102 RLGRETVKKNETEGGGG--RHGHEEKKMGAKKGLPMTAFMNSNFQSVNNSVLYDSSCNHR 161
           RLG ET+KK ETE  G    +GHE+KK G KK  P++AFMNSNFQSVNNS+L+DSSC HR
Sbjct: 205 RLGGETLKKKETEDDGDVDGYGHEDKKTGRKKKPPISAFMNSNFQSVNNSLLFDSSCQHR 264

Query: 162 DPGLHLAFSDAADGDGATVDGHKTYKPK 187
           DPGLHL+F +AADG GA VDG K+YKPK
Sbjct: 265 DPGLHLSFPNAADGGGAVVDGDKSYKPK 292

[Close]
BLAST of Cla021127 vs. NCBI nr
Match: gi|449432016|ref|XP_004133796.1| (PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 7.5e-23
Identity = 72/156 (46.15%), Postives = 91/156 (58.33%), Query Frame = 1 

Query: 29  PKSPPGMGLRLSPETKGIVYNKAV-EKPGKSD---RPYEYGSGKPHQKQQQA---AEVIN 88
           P+SPP +      E K I+Y     EKP K+D   +  EYG+ KP QKQQ     ++VIN
Sbjct: 160 PRSPPEI------EQKKILYQTTTTEKPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVIN 219

Query: 89  LNGHNVGAVMEINKSSDGYRLGRETVKKNETEGGGGRHGHEEKKMGAKKGLPMTAFMNSN 148
           + G NVGAVM I +SSDG     E +KK  T G    +  EEK   +    P  +FMNSN
Sbjct: 220 IKGENVGAVMHITQSSDG----SEVIKKKPTVGQSKEN--EEKTNKSNSNYPGKSFMNSN 279

Query: 149 FQSVNNSVLYDSSCNHRDPGLHLAFSDAADGDGATV 178
           FQ VNNS+LY+SS +HRDPGLHLAF       G ++
Sbjct: 280 FQGVNNSILYNSSLSHRDPGLHLAFGSKKSKHGDSI 303

[Close]
BLAST of Cla021127 vs. NCBI nr
Match: gi|659074888|ref|XP_008437849.1| (PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 1.4e-21
Identity = 70/155 (45.16%), Postives = 92/155 (59.35%), Query Frame = 1 

Query: 29  PKSPPGMGLRLSPETKGIVYNKAV-EKPGKSD--RPYEYGSGKPHQKQ---QQAAEVINL 88
           P+SPP +      E K I+Y     EKP K+D  +  +YG+ KP QKQ   Q  ++VIN+
Sbjct: 162 PRSPPEI------EQKKILYQTTTTEKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINI 221

Query: 89  NGHNVGAVMEINKSSDGYRLGRETVKKNETEGGGGRHGHEEKKMGAKKGLPMTAFMNSNF 148
            G NVGAVM I +SSDG     E +KK  + G    +  EEK   +    P  +FMNSNF
Sbjct: 222 KGDNVGAVMHITQSSDG----SEILKKKPSVGQSKEN--EEKTNKSNSNFPGKSFMNSNF 281

Query: 149 QSVNNSVLYDSSCNHRDPGLHLAFSDAADGDGATV 178
           Q VNNS+LY+SS +HRDPGLHLA+S      G ++
Sbjct: 282 QGVNNSILYNSSLSHRDPGLHLAYSSKNPKHGDSI 304

[Close]
BLAST of Cla021127 vs. NCBI nr
Match: gi|449432014|ref|XP_004133795.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 7.7e-20
Identity = 69/163 (42.33%), Postives = 86/163 (52.76%), Query Frame = 1 

Query: 29  PKSPPGMGLRLSPETK---GIVYNKAVEKPGKSDRPYEYGSGKPHQKQQQAAEVINLNGH 88
           PK  P    R SPE K   GI +   VEK  KSDR +E        K Q     IN+ G 
Sbjct: 104 PKYKPNTQPR-SPEAKQKPGIFHKSTVEKVTKSDRYHESSKTLSSHKGQLQPNAINIKGE 163

Query: 89  NVGAVMEINKSSDGYRLGRETVKKNETEGGGGRHGHE-------EKKMGAKKGLPMTAFM 148
           NVGAVMEI +SS   R G   +KK +    G  + ++       E        +P   F+
Sbjct: 164 NVGAVMEIVESSK--REGGHMIKKIKETARGILNNNDMANDQNNEASKAPNSSMPTNTFL 223

Query: 149 NSNFQSVNNSVLYDSSCNHRDPGLHLAFSDAADGDGATVDGHK 182
           NSNFQSVNNS+LY+++  HRDPGLHLAFS    G+ + VD HK
Sbjct: 224 NSNFQSVNNSLLYNANLTHRDPGLHLAFSRNPTGERSGVDDHK 263

The following BLAST results are available for this feature:
BLAST of Cla021127 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L320_CUCSA6.1e-4868.24Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119300 PE=4 SV=1[more]
A0A0A0L5T3_CUCSA5.2e-2346.15Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1[more]
A0A0A0L3R5_CUCSA5.4e-2042.33Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119280 PE=4 SV=1[more]
A0A0A0L8G8_CUCSA4.6e-1950.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119310 PE=4 SV=1[more]
K4CLW3_SOLLC4.9e-1343.56Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
BLAST of Cla021127 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074890|ref|XP_008437851.1|2.9e-5174.17PREDICTED: serine/arginine repetitive matrix protein 1-like [Cucumis melo][more]
gi|449432018|ref|XP_004133797.1|8.8e-4868.24PREDICTED: atherin-like [Cucumis sativus][more]
gi|449432016|ref|XP_004133796.1|7.5e-2346.15PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus][more]
gi|659074888|ref|XP_008437849.1|1.4e-2145.16PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis me... [more]
gi|449432014|ref|XP_004133795.1|7.7e-2042.33PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU74356watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla021127Cla021127.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU74356WMU74356transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33472FAMILY NOT NAMEDcoord: 78..180
score: 2.1