Cla021062 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021062
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Arv1-like protein (AHRD V1 -- F4HQG4_ARATH); contains Interpro domain(s) IPR007290 Arv1-like protein
Location	Chr5 : 80024 .. 81828 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGGGAAACAAACGGGAATCGTTGTGTGCAGTGTGGATTTAGAATGAATCAATTGTTCGTTCTGTACTCACCCGGAAACATGCATCTTATGAAATGCGTAAGCTTGCTCTAGCAAGATTTCTCCCTCACCTGTTCATTTATGCGATCTTTAAATCCTCGTTTCTTTTCTTGTATGTGAAATCCTTATGCTTCTTAATGTTAATAGGACAACTGCAAATCCGTTGCGGACGAATACATTGAATTTGAAGTGATGGTGAATTGTCCACTCCTTTATTACGATTTTTGTTTTCTTTTATGCTTTCTTTCCATCGACTTGTTTATACAATTACTTTATCTGAGGAATATATACTTTTCTAAGTGATAGATCGTTCTAATCGATTTAATACTGCACAAGCGCCAGGCTTACAGACATTTGCTCTACAACCTACTCGATAGAAATCGCTTGTCTCGTCAGGTACATACCCAATTACGTCAATTCCCTGACATGCACACAACAAAATATAATGGAAAATTGTTCGTTTTCTTTTTTTTTTTCTTGGATTGATGACCATTTACAAATACGTTTATGATTGATGATCTACTCCCACAAATGTGTGAAATTTAACCTTTTGTTTCCGTCACAGCTGCTTTTTTATAACCTATCGGGTTATGAATGACCATCTCCCTAATGTGATGATTAATCATATCGCTATCTCTACATTTTTCATGACCATTAAGGTTACGATAGATATGGTTATCCTAACGCGATACATTATAAAATGCGGTAGTGTGCTTTGATGTAAGCAAAAGGTTAGATTTCGTACATTTGTGAGGGGTGGGTCATCAATCATAAACGTGCTTGTGAATGGGTCATCCATACAAAAAAAACTTTTTTTTTTCCTCTCTCTCTTCTTCTTCTCCATGTATGTCATTCACCATTTCGTTTTGCTTCATGAATATTTTTAAGTTTTAGCTACACATCTCACACAAATAATAAAAATGATTAAAAACCTTATGTGAAATCTAGTTTTATTTTTTTATTTTTATTTTTATTTTTATTATAATGTAAAATGTTTTTTTCTTCCCCTGCTTCTAGCTTATGTATACTTTCTTCTAGACAAATGTACCGTTGGCCCAAAGTTGGAGCCTAAAATGGAATTTGCCCCTCTTTTTAGGACTAAATTTTTCTCTGAGTACTTTTGGGAGGATAAATGGGTGGGGGATAGACCCCTGTGCTCTGTGTTTCCTCGTCATTGTCATTTGTCTTCCCTTAAGCATTGTTTTATATATGACTTTCTTGTTTGGTCACGTAGCTCTATTTCTTTCTCATTTGGCTTTAGTCGGTTATTGATTGGTAAAGAAATGACAAAGGTTGTCATTATTTTGTCTTTGATTGGAGAGTTTGGTTTTAGGCATGATAGACCCTTCCACTTGAGGGCTTCTTTTGTAAGTCTTTCTTTCGGTATTTGCTAGATCCCTCTTTTGTTTCTTTAGCAAGTTGAACTTACCTTCGTGGTTGGTCCCTTTTGTTGTATTCTTGGTTGGAACGCAGAGGAAGACTTGGATCATCTTCTGTGGAGTTGTGAGTTGGTGAGGTTGACGTGGAATTGCTTTTTCTAGGAGTTTGGTTTCATGTTGGTTCCTCAAAGAAGTGTTAGTGGCTTGTTCGGGGAGTTCCTCCTCCATCTGCCTTTTAGGGAGAAGGGTTGCTTTCTTTGGGAAGCTAGGGTGTGCGCTTGTTATGAGTTTTATGGGGAGAGAGAAACAACAAAGTTTTTAAAGGGTTGGAGAGGGACCCTAGTGACGTGTGGTCCTTGCTAA

mRNA sequence

ATGGGAAGGGAAACAAACGGGAATCGTTGTGTGCAGTGTGGATTTAGAATGAATCAATTGTTCGTTCTGTACTCACCCGGAAACATGCATCTTATGAAATGCGACAACTGCAAATCCGTTGCGGACGAATACATTGAATTTGAAGTGATGATCGTTCTAATCGATTTAATACTGCACAAGCGCCAGGCTTACAGACATTTGCTCTACAACCTACTCGATAGAAATCGCTTGTCTCGTCAGGAGTTTGGTTTCATGTTGGTTCCTCAAAGAAGTGTTAGTGGCTTGTTCGGGGAGTTCCTCCTCCATCTGCCTTTTAGGGAGAAGGGTTGCTTTCTTTGGGAAGCTAGGGTGTGCGCTTGTTATGAGTTTTATGGGGAGAGAGAAACAACAAAGTTTTTAAAGGGTTGGAGAGGGACCCTAGTGACGTGTGGTCCTTGCTAA

Coding sequence (CDS)

ATGGGAAGGGAAACAAACGGGAATCGTTGTGTGCAGTGTGGATTTAGAATGAATCAATTGTTCGTTCTGTACTCACCCGGAAACATGCATCTTATGAAATGCGACAACTGCAAATCCGTTGCGGACGAATACATTGAATTTGAAGTGATGATCGTTCTAATCGATTTAATACTGCACAAGCGCCAGGCTTACAGACATTTGCTCTACAACCTACTCGATAGAAATCGCTTGTCTCGTCAGGAGTTTGGTTTCATGTTGGTTCCTCAAAGAAGTGTTAGTGGCTTGTTCGGGGAGTTCCTCCTCCATCTGCCTTTTAGGGAGAAGGGTTGCTTTCTTTGGGAAGCTAGGGTGTGCGCTTGTTATGAGTTTTATGGGGAGAGAGAAACAACAAAGTTTTTAAAGGGTTGGAGAGGGACCCTAGTGACGTGTGGTCCTTGCTAA

Protein sequence

MGRETNGNRCVQCGFRMNQLFVLYSPGNMHLMKCDNCKSVADEYIEFEVMIVLIDLILHKRQAYRHLLYNLLDRNRLSRQEFGFMLVPQRSVSGLFGEFLLHLPFREKGCFLWEARVCACYEFYGERETTKFLKGWRGTLVTCGPC

Homology

[Close]

BLAST of Cla021062 vs. Swiss-Prot
Match: ARV1_SCHPO (Protein arv1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arv1 PE=3 SV=3)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-11
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1


Query: 9  RCVQCGFRMNQLFVLYSPG--NMHLMKCDNCKSVADEYIEFEVMIVLIDLILHKRQAYRH 68
          +CV+CG  ++ L+  Y  G  N+ L +C NCK  AD+YIE +V+++ +D+IL K Q YRH
Sbjct: 2  KCVECGAEVDSLYTYYGRGTSNIRLAQCKNCKQFADKYIELDVVLISMDVILMKPQVYRH 61

Query: 69 LLYNLL 73
          LL+N L
Sbjct: 62 LLFNSL 67

[Close]

BLAST of Cla021062 vs. Swiss-Prot
Match: ARV1_DICDI (Protein arv1 homolog OS=Dictyostelium discoideum GN=arv1 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.7e-11
Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 1


Query: 10 CVQCGFRMNQLFVLYSP---GNMHLMKCDNCKSVADEYIEFEVMIVLIDLILHKRQAYRH 69
          C++CG  +N ++  +     GN+ L +C +C   AD+Y+E++ +IV +DL LHK QAYRH
Sbjct: 3  CIECGRPVNDVYKEFGKAGSGNIRLTRCASCNQTADKYVEYDFIIVFLDLFLHKAQAYRH 62

Query: 70 LLYN 71
          LL+N
Sbjct: 63 LLFN 66

[Close]

BLAST of Cla021062 vs. Swiss-Prot
Match: ARV1_CANAL (Protein ARV1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ARV1 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-09
Identity = 26/65 (40.00%), Postives = 42/65 (64.62%), Query Frame = 1


Query: 10 CVQCGF-RMNQLFVLYSPGNMHLMKCDNCKSVADEYIEFEVMIVLIDLILHKRQAYRHLL 69
          C++CG+  ++ L+  Y    + L  C  C  +AD+YIE++ +I+ +D++L KRQAY+HL 
Sbjct: 3  CIECGYSNIDCLYSKYKSDYIKLSVCPECNKIADKYIEYDSVILFLDILLLKRQAYKHLA 62

Query: 70 YNLLD 74
          YNL +
Sbjct: 63 YNLTE 67

[Close]

BLAST of Cla021062 vs. Swiss-Prot
Match: ARV1_MOUSE (Protein ARV1 OS=Mus musculus GN=Arv1 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.2e-09
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1


Query: 9  RCVQCGFRMNQLFVLYSPGNMHLMKCDNCKSVADEYIEFEVMIVLIDLILHKRQAYRHLL 68
          RC++C     +L+  YS G + +  C +C+   D+YIE++ +I+LI+ IL K QAYRH+L
Sbjct: 28 RCIECNREAQELYRDYSHGVLKITICKSCQKPVDKYIEYDPVIILINAILCKTQAYRHIL 87

Query: 69 YN 71
          +N
Sbjct: 88 FN 89

[Close]

BLAST of Cla021062 vs. Swiss-Prot
Match: ARV1_BOVIN (Protein ARV1 OS=Bos taurus GN=ARV1 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-08
Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 1


Query: 9   RCVQCGFRMNQLFVLYSPGNMHLMKCDNCKSVADEYIEFEVMIVLIDLILHKRQAYRHLL 68
           RC++C     +L+  Y+ G + +  C +C+   D+YIE++ +I+LI+ IL K QAYRH+L
Sbjct: 44  RCIECNQEAKELYRDYNHGVLKITICKSCQKPVDKYIEYDPVIILINAILCKAQAYRHIL 103

Query: 69  YN 71
           +N
Sbjct: 104 FN 105

[Close]

BLAST of Cla021062 vs. TrEMBL
Match: A0A0A0L5K8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116660 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.5e-35
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1


Query: 1   MGRETNGNRCVQCGFRMNQLFVLYSPGNMHLMKCDNCKSVADEYIEFEVMIVLIDLILHK 60
           MGRETNGNRCVQCGFR +QLFVLYSPGNMHLMKCDNCKSVADEYIE E MIVL+DLILHK
Sbjct: 48  MGRETNGNRCVQCGFRTSQLFVLYSPGNMHLMKCDNCKSVADEYIECEAMIVLVDLILHK 107

Query: 61  RQAYRHLLYNLLDRNRLSRQEFGFML 87
           RQAYRHLLYN  DRNRLSR++  + L
Sbjct: 108 RQAYRHLLYNQFDRNRLSRKDLMWKL 133

[Close]

BLAST of Cla021062 vs. TrEMBL
Match: A0A0B2PHP3_GLYSO (Protein arv1 OS=Glycine soja GN=glysoja_029463 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.3e-23
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 1


Query: 7   GNRCVQCGFRMNQLFVLYSPGNMHLMKCDNCKSVADEYIEFEVMIVLIDLILHKRQAYRH 66
           G RC+QCG  +  L+V YSPGN+ LMKC+NCK+VADEYIE E+MI+ IDLILHK +AYRH
Sbjct: 2   GYRCIQCGCPVKTLYVQYSPGNIRLMKCENCKAVADEYIECEIMILAIDLILHKPKAYRH 61

Query: 67  LLYNLLDRNRLSRQEFGFMLVPQRSVSGLFGEFL---LHLPFREKGCFLWEARVCACYEF 126
           LL+N++++  +  Q F   L  Q+   G   E L   +++     GCF+WE  V   +  
Sbjct: 62  LLHNVINQETMKFQMFD--LGKQQGKIGFINECLSISINMLEGADGCFIWELDVSFNFLL 121

[Close]

BLAST of Cla021062 vs. TrEMBL
Match: A0A061DRV1_THECC (Arv1-like protein, putative OS=Theobroma cacao GN=TCM_005012 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.6e-22
Identity = 54/85 (63.53%), Postives = 68/85 (80.00%), Query Frame = 1


Query: 9  RCVQCGFRMNQLFVLYSPGNMHLMKCDNCKSVADEYIEFEVMIVLIDLILHKRQAYRHLL 68
          RCVQCGF++  LFV YSPGN+ LMKC+ CK+VADEYIE E+MIVLIDLILHK +AYRHLL
Sbjct: 4  RCVQCGFQVKTLFVQYSPGNIRLMKCEKCKAVADEYIECELMIVLIDLILHKPKAYRHLL 63

Query: 69 YNLLDRNR------LSRQEFGFMLV 88
          YN+L++ R      L +  FGF+++
Sbjct: 64 YNVLNQQRTHFQGLLWKLLFGFLVL 88

[Close]

BLAST of Cla021062 vs. TrEMBL
Match: A0A067H478_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026819mg PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-21
Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 1


Query: 9  RCVQCGFRMNQLFVLYSPGNMHLMKCDNCKSVADEYIEFEVMIVLIDLILHKRQAYRHLL 68
          RCV+CGFR+  LFV YSPGN+ LMKC+NC++VADEYIE E+MI+LIDLILHK QAYRHLL
Sbjct: 4  RCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVADEYIECEIMILLIDLILHKPQAYRHLL 63

Query: 69 YNLLD------RNRLSRQEFGFMLV 88
          YN+L+      +  L +   GF+L+
Sbjct: 64 YNVLNSETVNLKGILWKSTVGFLLL 88

[Close]

BLAST of Cla021062 vs. TrEMBL
Match: A0A0D2SBC6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G114300 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-21
Identity = 63/137 (45.99%), Postives = 82/137 (59.85%), Query Frame = 1


Query: 9   RCVQCGFRMNQLFVLYSPGNMHLMKCDNCKSVADEYIEFEVMIVLIDLILHKRQAYRHLL 68
           RCVQCGFR+  LFV YSPGN+ LMKC NCK+VADEYIE E+MIVLIDLILHK +AYRH+L
Sbjct: 4   RCVQCGFRIKTLFVQYSPGNIRLMKCVNCKAVADEYIECELMIVLIDLILHKPKAYRHVL 63

Query: 69  YNLLDRNR------LSRQEFGFMLV----------------PQRSVSGLFGEFLLHLPFR 124
           +N+L+  R      L +   GF+++                   S+S +F  ++ H+   
Sbjct: 64  FNVLNHERTHFQGLLWKSLVGFLVLDAYRSLLVKKPEEEWGTSMSISSIF--WIYHV--- 123

[Close]

BLAST of Cla021062 vs. NCBI nr
Match: gi|659074707|ref|XP_008437753.1| (PREDICTED: protein arv1 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 3.0e-35
Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 1


Query: 1  MGRETNGNRCVQCGFRMNQLFVLYSPGNMHLMKCDNCKSVADEYIEFEVMIVLIDLILHK 60
          MG ETNGNRCVQCGFR +QLFVLYSPGNMHLMKCDNCKSVADEYIE EVMIVL+DLILHK
Sbjct: 1  MGTETNGNRCVQCGFRTSQLFVLYSPGNMHLMKCDNCKSVADEYIECEVMIVLVDLILHK 60

Query: 61 RQAYRHLLYNLLDRNRLSRQEFGFML 87
          RQAYRHLLYN  DRNRLSRQ+  + L
Sbjct: 61 RQAYRHLLYNQFDRNRLSRQDLMWKL 86

[Close]

BLAST of Cla021062 vs. NCBI nr
Match: gi|659074711|ref|XP_008437755.1| (PREDICTED: protein arv1 homolog isoform X3 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 3.0e-35
Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 1


Query: 1  MGRETNGNRCVQCGFRMNQLFVLYSPGNMHLMKCDNCKSVADEYIEFEVMIVLIDLILHK 60
          MG ETNGNRCVQCGFR +QLFVLYSPGNMHLMKCDNCKSVADEYIE EVMIVL+DLILHK
Sbjct: 1  MGTETNGNRCVQCGFRTSQLFVLYSPGNMHLMKCDNCKSVADEYIECEVMIVLVDLILHK 60

Query: 61 RQAYRHLLYNLLDRNRLSRQEFGFML 87
          RQAYRHLLYN  DRNRLSRQ+  + L
Sbjct: 61 RQAYRHLLYNQFDRNRLSRQDLMWKL 86

[Close]

BLAST of Cla021062 vs. NCBI nr
Match: gi|659074715|ref|XP_008437757.1| (PREDICTED: protein arv1 homolog isoform X5 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 3.0e-35
Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 1


Query: 1  MGRETNGNRCVQCGFRMNQLFVLYSPGNMHLMKCDNCKSVADEYIEFEVMIVLIDLILHK 60
          MG ETNGNRCVQCGFR +QLFVLYSPGNMHLMKCDNCKSVADEYIE EVMIVL+DLILHK
Sbjct: 1  MGTETNGNRCVQCGFRTSQLFVLYSPGNMHLMKCDNCKSVADEYIECEVMIVLVDLILHK 60

Query: 61 RQAYRHLLYNLLDRNRLSRQEFGFML 87
          RQAYRHLLYN  DRNRLSRQ+  + L
Sbjct: 61 RQAYRHLLYNQFDRNRLSRQDLMWKL 86

[Close]

BLAST of Cla021062 vs. NCBI nr
Match: gi|659074703|ref|XP_008437751.1| (PREDICTED: protein arv1 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 3.0e-35
Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 1


Query: 1  MGRETNGNRCVQCGFRMNQLFVLYSPGNMHLMKCDNCKSVADEYIEFEVMIVLIDLILHK 60
          MG ETNGNRCVQCGFR +QLFVLYSPGNMHLMKCDNCKSVADEYIE EVMIVL+DLILHK
Sbjct: 1  MGTETNGNRCVQCGFRTSQLFVLYSPGNMHLMKCDNCKSVADEYIECEVMIVLVDLILHK 60

Query: 61 RQAYRHLLYNLLDRNRLSRQEFGFML 87
          RQAYRHLLYN  DRNRLSRQ+  + L
Sbjct: 61 RQAYRHLLYNQFDRNRLSRQDLMWKL 86

[Close]

BLAST of Cla021062 vs. NCBI nr
Match: gi|449431936|ref|XP_004133756.1| (PREDICTED: protein arv1 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 5.1e-35
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1


Query: 1   MGRETNGNRCVQCGFRMNQLFVLYSPGNMHLMKCDNCKSVADEYIEFEVMIVLIDLILHK 60
           MGRETNGNRCVQCGFR +QLFVLYSPGNMHLMKCDNCKSVADEYIE E MIVL+DLILHK
Sbjct: 48  MGRETNGNRCVQCGFRTSQLFVLYSPGNMHLMKCDNCKSVADEYIECEAMIVLVDLILHK 107

Query: 61  RQAYRHLLYNLLDRNRLSRQEFGFML 87
           RQAYRHLLYN  DRNRLSR++  + L
Sbjct: 108 RQAYRHLLYNQFDRNRLSRKDLMWKL 133

The following BLAST results are available for this feature:

BLAST of Cla021062 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARV1_SCHPO	1.3e-11	46.97	Protein arv1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arv1 PE=3...	[more]
ARV1_DICDI	6.7e-11	43.75	Protein arv1 homolog OS=Dictyostelium discoideum GN=arv1 PE=3 SV=1	[more]
ARV1_CANAL	2.8e-09	40.00	Protein ARV1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ARV1 PE=3 SV...	[more]
ARV1_MOUSE	6.2e-09	41.94	Protein ARV1 OS=Mus musculus GN=Arv1 PE=2 SV=1	[more]
ARV1_BOVIN	1.4e-08	40.32	Protein ARV1 OS=Bos taurus GN=ARV1 PE=2 SV=1	[more]

BLAST of Cla021062 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5K8_CUCSA	3.5e-35	84.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116660 PE=4 SV=1	[more]
A0A0B2PHP3_GLYSO	5.3e-23	48.36	Protein arv1 OS=Glycine soja GN=glysoja_029463 PE=4 SV=1	[more]
A0A061DRV1_THECC	7.6e-22	63.53	Arv1-like protein, putative OS=Theobroma cacao GN=TCM_005012 PE=4 SV=1	[more]
A0A067H478_CITSI	1.0e-21	62.35	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026819mg PE=4 SV=1	[more]
A0A0D2SBC6_GOSRA	1.0e-21	45.99	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G114300 PE=4 SV=1	[more]

BLAST of Cla021062 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074707\|ref\|XP_008437753.1\|	3.0e-35	86.05	PREDICTED: protein arv1 homolog isoform X2 [Cucumis melo]	[more]
gi\|659074711\|ref\|XP_008437755.1\|	3.0e-35	86.05	PREDICTED: protein arv1 homolog isoform X3 [Cucumis melo]	[more]
gi\|659074715\|ref\|XP_008437757.1\|	3.0e-35	86.05	PREDICTED: protein arv1 homolog isoform X5 [Cucumis melo]	[more]
gi\|659074703\|ref\|XP_008437751.1\|	3.0e-35	86.05	PREDICTED: protein arv1 homolog isoform X1 [Cucumis melo]	[more]
gi\|449431936\|ref\|XP_004133756.1\|	5.1e-35	84.88	PREDICTED: protein arv1 homolog isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007290	Arv1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0032366	intracellular sterol transport
biological_process	GO:0097036	regulation of plasma membrane sterol distribution
biological_process	GO:0006665	sphingolipid metabolic process
biological_process	GO:0016125	sterol metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0032541	cortical endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021062	Cla021062.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007290	Arv1 protein	PANTHER	PTHR14467	ARV1	coord: 2..75 score: 1.3
IPR007290	Arv1 protein	PFAM	PF04161	Arv1	coord: 9..78 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021062	Cla97C05G079950	Watermelon (97103) v2	wmwmbB206
Cla021062	Csa3G116660	Cucumber (Chinese Long) v2	cuwmB233
Cla021062	ClCG05G000050	Watermelon (Charleston Gray)	wcgwmB286
Cla021062	CSPI03G07010	Wild cucumber (PI 183967)	cpiwmB231
Cla021062	Cucsa.260090	Cucumber (Gy14) v1	cgywmB479
Cla021062	CsGy3G007160	Cucumber (Gy14) v2	cgybwmB217
Cla021062	MELO3C005932.2	Melon (DHL92) v3.6.1	medwmB447
Cla021062	CsaV3_3G007110	Cucumber (Chinese Long) v3	cucwmB239
Cla021062	Bhi01G000461	Wax gourd	wgowmB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021062	Cucurbita maxima (Rimu)	cmawmB799
Cla021062	Cucurbita moschata (Rifu)	cmowmB793
Cla021062	Melon (DHL92) v3.5.1	mewmB461
Cla021062	Cucurbita pepo (Zucchini)	cpewmB845
Cla021062	Bottle gourd (USVL1VR-Ls)	lsiwmB365
Cla021062	Silver-seed gourd	carwmB1013