Cla020681 (gene) Watermelon (97103) v1

NameCla020681
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCalcium-binding protein (AHRD V1 **-* Q2KN25_AMBAR); contains Interpro domain(s) IPR011992 EF-Hand type
LocationChr5 : 27761842 .. 27762135 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTGAGTTCCGTTTTCAGAAACAGCATCAGCGACTACAAGCGATGTCCAGTTCCTTTCTCCAGAGAGCAGCTTCGCGATATTTTCCTCAAGCACGATGGCGACGGCGACGGCCGACTTTCTCGCATGGAATTGAAATCGGCCTTCGATTCCTTAGGATCTAATTGGAGCCGTTTCAGAGCTCGTCAGTGTCTCAAAGCCGCCGATTCCGACGGCGATGGCTACGTTACTCTCGATGAACTTGATCGCCTTCTTGATTACGCTGTAAGATGCGAATACGCTATAATTTGA

mRNA sequence

ATGGCGTTGAGTTCCGTTTTCAGAAACAGCATCAGCGACTACAAGCGATGTCCAGTTCCTTTCTCCAGAGAGCAGCTTCGCGATATTTTCCTCAAGCACGATGGCGACGGCGACGGCCGACTTTCTCGCATGGAATTGAAATCGGCCTTCGATTCCTTAGGATCTAATTGGAGCCGTTTCAGAGCTCGTCAGTGTCTCAAAGCCGCCGATTCCGACGGCGATGGCTACGTTACTCTCGATGAACTTGATCGCCTTCTTGATTACGCTGTAAGATGCGAATACGCTATAATTTGA

Coding sequence (CDS)

ATGGCGTTGAGTTCCGTTTTCAGAAACAGCATCAGCGACTACAAGCGATGTCCAGTTCCTTTCTCCAGAGAGCAGCTTCGCGATATTTTCCTCAAGCACGATGGCGACGGCGACGGCCGACTTTCTCGCATGGAATTGAAATCGGCCTTCGATTCCTTAGGATCTAATTGGAGCCGTTTCAGAGCTCGTCAGTGTCTCAAAGCCGCCGATTCCGACGGCGATGGCTACGTTACTCTCGATGAACTTGATCGCCTTCTTGATTACGCTGTAAGATGCGAATACGCTATAATTTGA

Protein sequence

MALSSVFRNSISDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAVRCEYAII
BLAST of Cla020681 vs. Swiss-Prot
Match: CML10_ORYSJ (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-08
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 1

Query: 18  PVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYV 77
           P P   E++  +F K D +GDGR+SR EL + F+SLG   +     + +  AD+DGDG++
Sbjct: 33  PAPTPEEEMERVFRKFDANGDGRISRSELGALFESLGHAATDDELARMMAEADADGDGFI 92

Query: 78  TLDELDRL 86
           +LDE   L
Sbjct: 93  SLDEFAAL 100

BLAST of Cla020681 vs. Swiss-Prot
Match: CML15_ORYSJ (Probable calcium-binding protein CML15 OS=Oryza sativa subsp. japonica GN=CML15 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.6e-07
Identity = 25/62 (40.32%), Postives = 37/62 (59.68%), Query Frame = 1

Query: 20  PFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTL 79
           P + ++   +F K D +GDGR+SR EL + F S+G   +     + ++ ADSDGDGY++L
Sbjct: 50  PAAEDETERVFRKFDANGDGRISRAELAALFRSVGHAVTDDEVARMMQEADSDGDGYISL 109

Query: 80  DE 82
            E
Sbjct: 110 GE 111

BLAST of Cla020681 vs. Swiss-Prot
Match: POLC2_JUNOX (Polcalcin Jun o 2 OS=Juniperus oxycedrus PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.5e-06
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 1

Query: 22 SREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDE 81
          S  +L ++F K D +GDG++S  EL     SLGS+      +  ++ AD+DGDGYV+L E
Sbjct: 23 SVHELEEVFKKFDANGDGKISGSELADILRSLGSDVGEAEVKAMMEEADADGDGYVSLQE 82

BLAST of Cla020681 vs. Swiss-Prot
Match: CML27_ARATH (Probable calcium-binding protein CML27 OS=Arabidopsis thaliana GN=CML27 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.5e-06
Identity = 22/62 (35.48%), Postives = 38/62 (61.29%), Query Frame = 1

Query: 24 EQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELD 83
          E+L+ +F + D +GDG++S +EL   F ++G++++     + L+  D+D DGY+ LDE  
Sbjct: 22 EELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYINLDEFS 81

Query: 84 RL 86
           L
Sbjct: 82 TL 83

BLAST of Cla020681 vs. TrEMBL
Match: A0A0A0L4V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639740 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 8.0e-44
Identity = 88/97 (90.72%), Postives = 93/97 (95.88%), Query Frame = 1

Query: 1  MALSSVFRNSISDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRF 60
          MALS VF N +SDYKRCPVPFSR+QLRDIFLKHDGDGDGRLSR+ELKSAF+SLGSNWSRF
Sbjct: 1  MALSFVFSNGVSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFESLGSNWSRF 60

Query: 61 RARQCLKAADSDGDGYVTLDELDRLLDYAVRCEYAII 98
          RARQ LKAAD+DGDGYVTLDELDRLLDYAVRCEYAII
Sbjct: 61 RARQSLKAADADGDGYVTLDELDRLLDYAVRCEYAII 97

BLAST of Cla020681 vs. TrEMBL
Match: A0A0A0LRB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357340 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-16
Identity = 42/83 (50.60%), Postives = 59/83 (71.08%), Query Frame = 1

Query: 14 YKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDG 73
          YKR  VPFS EQL ++F  HD DGDG L++ ELK AF+ LGS +  FR  + L+AAD++G
Sbjct: 9  YKRVLVPFSEEQLANVFKNHDRDGDGHLTKEELKQAFEYLGSRFCNFRVEEALRAADTNG 68

Query: 74 DGYVTLDELDRLLDYAVRCEYAI 97
          DG +++DE+ +L+ YA   +Y I
Sbjct: 69 DGVISMDEMGKLIKYAKTRKYTI 91

BLAST of Cla020681 vs. TrEMBL
Match: A0A061ECW3_THECC (Calcium-binding EF-hand family protein, putative OS=Theobroma cacao GN=TCM_017146 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.7e-14
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 1

Query: 12  SDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADS 71
           S+ K  P  F+  QL  +F + DG+ DGRLSR EL+SAF+SLGS +  +RA   L  AD 
Sbjct: 43  SNTKLSPPFFTEAQLTSVFRRFDGNRDGRLSRQELRSAFNSLGSRFPTYRAFAALHQADQ 102

Query: 72  DGDGYVTLDELDRLLDYAVRCEYAI 97
           +GDGY++ DE+D L+ YA+ C Y +
Sbjct: 103 NGDGYISEDEMDDLIHYALSCGYHV 127

BLAST of Cla020681 vs. TrEMBL
Match: A0A067L1J7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04285 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.6e-13
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 1

Query: 22 SREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDE 81
          + EQL+ IF +HD +GDGRLS+ E+K AF  LGS    +R R+ LK AD+DGDG +++ E
Sbjct: 15 TEEQLKAIFKEHDTNGDGRLSKDEIKLAFQQLGSRLPGWRVRRALKHADADGDGTISVSE 74

Query: 82 LDRLLDYAVRCEYAI 97
          LD L+ YAVR  Y+I
Sbjct: 75 LDELVKYAVRFGYSI 89

BLAST of Cla020681 vs. TrEMBL
Match: F6H000_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g10630 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = 1

Query: 15 KRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGD 74
          K   VP++++QL++ F +HD DGD  LS++ELK AFD L S    FRA + +  AD+DGD
Sbjct: 14 KSTSVPYTKQQLQEFFKQHDKDGDKLLSKVELKKAFDDLQSRNPGFRAWRAMGKADADGD 73

Query: 75 GYVTLDELDRLLDYAVRCEY 95
           +++  E++ LLDYAV  +Y
Sbjct: 74 QHISQQEMEALLDYAVGIKY 93

BLAST of Cla020681 vs. NCBI nr
Match: gi|700200028|gb|KGN55186.1| (hypothetical protein Csa_4G639740 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43
Identity = 88/97 (90.72%), Postives = 93/97 (95.88%), Query Frame = 1

Query: 1  MALSSVFRNSISDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRF 60
          MALS VF N +SDYKRCPVPFSR+QLRDIFLKHDGDGDGRLSR+ELKSAF+SLGSNWSRF
Sbjct: 1  MALSFVFSNGVSDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFESLGSNWSRF 60

Query: 61 RARQCLKAADSDGDGYVTLDELDRLLDYAVRCEYAII 98
          RARQ LKAAD+DGDGYVTLDELDRLLDYAVRCEYAII
Sbjct: 61 RARQSLKAADADGDGYVTLDELDRLLDYAVRCEYAII 97

BLAST of Cla020681 vs. NCBI nr
Match: gi|700207392|gb|KGN62511.1| (hypothetical protein Csa_2G357340 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 4.6e-16
Identity = 42/83 (50.60%), Postives = 59/83 (71.08%), Query Frame = 1

Query: 14 YKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDG 73
          YKR  VPFS EQL ++F  HD DGDG L++ ELK AF+ LGS +  FR  + L+AAD++G
Sbjct: 9  YKRVLVPFSEEQLANVFKNHDRDGDGHLTKEELKQAFEYLGSRFCNFRVEEALRAADTNG 68

Query: 74 DGYVTLDELDRLLDYAVRCEYAI 97
          DG +++DE+ +L+ YA   +Y I
Sbjct: 69 DGVISMDEMGKLIKYAKTRKYTI 91

BLAST of Cla020681 vs. NCBI nr
Match: gi|590647162|ref|XP_007031825.1| (Calcium-binding EF-hand family protein, putative [Theobroma cacao])

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 1

Query: 12  SDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADS 71
           S+ K  P  F+  QL  +F + DG+ DGRLSR EL+SAF+SLGS +  +RA   L  AD 
Sbjct: 43  SNTKLSPPFFTEAQLTSVFRRFDGNRDGRLSRQELRSAFNSLGSRFPTYRAFAALHQADQ 102

Query: 72  DGDGYVTLDELDRLLDYAVRCEYAI 97
           +GDGY++ DE+D L+ YA+ C Y +
Sbjct: 103 NGDGYISEDEMDDLIHYALSCGYHV 127

BLAST of Cla020681 vs. NCBI nr
Match: gi|643731022|gb|KDP38360.1| (hypothetical protein JCGZ_04285 [Jatropha curcas])

HSP 1 Score: 81.6 bits (200), Expect = 8.1e-13
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 1

Query: 22 SREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDE 81
          + EQL+ IF +HD +GDGRLS+ E+K AF  LGS    +R R+ LK AD+DGDG +++ E
Sbjct: 15 TEEQLKAIFKEHDTNGDGRLSKDEIKLAFQQLGSRLPGWRVRRALKHADADGDGTISVSE 74

Query: 82 LDRLLDYAVRCEYAI 97
          LD L+ YAVR  Y+I
Sbjct: 75 LDELVKYAVRFGYSI 89

BLAST of Cla020681 vs. NCBI nr
Match: gi|658003923|ref|XP_008337060.1| (PREDICTED: probable calcium-binding protein CML10 [Malus domestica])

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12
Identity = 37/88 (42.05%), Postives = 60/88 (68.18%), Query Frame = 1

Query: 10  SISDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAA 69
           ++ D K   +P+++EQ+ ++F   D DGDGRLS+ ELK+AF   GS WS FRA + +  A
Sbjct: 16  TVVDKKVQIIPWTKEQMMEVFKSFDKDGDGRLSKEELKAAFKKFGSRWSSFRAWRAIWHA 75

Query: 70  DSDGDGYVTL-DELDRLLDYAVRCEYAI 97
           D++ DG++++ DE+  L  YA++C Y +
Sbjct: 76  DANKDGFISIDDEIGELTSYALKCGYKL 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CML10_ORYSJ1.6e-0841.18Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 ... [more]
CML15_ORYSJ8.6e-0740.32Probable calcium-binding protein CML15 OS=Oryza sativa subsp. japonica GN=CML15 ... [more]
POLC2_JUNOX1.5e-0641.67Polcalcin Jun o 2 OS=Juniperus oxycedrus PE=1 SV=2[more]
CML27_ARATH1.5e-0635.48Probable calcium-binding protein CML27 OS=Arabidopsis thaliana GN=CML27 PE=1 SV=... [more]
Match NameE-valueIdentityDescription
A0A0A0L4V0_CUCSA8.0e-4490.72Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639740 PE=4 SV=1[more]
A0A0A0LRB6_CUCSA3.2e-1650.60Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357340 PE=4 SV=1[more]
A0A061ECW3_THECC8.7e-1448.24Calcium-binding EF-hand family protein, putative OS=Theobroma cacao GN=TCM_01714... [more]
A0A067L1J7_JATCU5.6e-1353.33Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04285 PE=4 SV=1[more]
F6H000_VITVI1.1e-1146.25Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g10630 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
gi|700200028|gb|KGN55186.1|1.2e-4390.72hypothetical protein Csa_4G639740 [Cucumis sativus][more]
gi|700207392|gb|KGN62511.1|4.6e-1650.60hypothetical protein Csa_2G357340 [Cucumis sativus][more]
gi|590647162|ref|XP_007031825.1|1.2e-1348.24Calcium-binding EF-hand family protein, putative [Theobroma cacao][more]
gi|643731022|gb|KDP38360.1|8.1e-1353.33hypothetical protein JCGZ_04285 [Jatropha curcas][more]
gi|658003923|ref|XP_008337060.1|1.8e-1242.05PREDICTED: probable calcium-binding protein CML10 [Malus domestica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU13471watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU22158watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU23877watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU24884watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU31135watermelon EST collection version 2.0transcribed_cluster
WMU48202watermelon EST collection version 2.0transcribed_cluster
WMU53151watermelon EST collection version 2.0transcribed_cluster
WMU66665watermelon EST collection version 2.0transcribed_cluster
WMU74321watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla020681Cla020681.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU23877WMU23877transcribed_cluster
WMU22158WMU22158transcribed_cluster
WMU74321WMU74321transcribed_cluster
WMU53151WMU53151transcribed_cluster
WMU31135WMU31135transcribed_cluster
WMU66665WMU66665transcribed_cluster
WMU13471WMU13471transcribed_cluster
WMU24884WMU24884transcribed_cluster
WMU48202WMU48202transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 23..82
score: 2.7
IPR002048EF-hand domainSMARTSM00054efh_1coord: 61..89
score: 3.1coord: 25..53
score: 0
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 57..92
score: 10.078coord: 21..56
score: 1
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 23..86
score: 6.1
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 20..85
score: 1.4
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 70..82
score: -coord: 34..46
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 19..90
score: 2.3
NoneNo IPR availablePANTHERPTHR10891:SF592CALCIUM-BINDING PROTEIN CML38-RELATEDcoord: 19..90
score: 2.3

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla020681Cla97C08G159400Watermelon (97103) v2wmwmbB222
Cla020681Cla97C05G101430Watermelon (97103) v2wmwmbB207
Cla020681Csa4G639740Cucumber (Chinese Long) v2cuwmB319
Cla020681Csa2G357350Cucumber (Chinese Long) v2cuwmB126
Cla020681MELO3C010865Melon (DHL92) v3.5.1mewmB317
Cla020681MELO3C016746Melon (DHL92) v3.5.1mewmB527
Cla020681ClCG08G015810Watermelon (Charleston Gray)wcgwmB412
Cla020681ClCG05G019810Watermelon (Charleston Gray)wcgwmB285
Cla020681CSPI02G19260Wild cucumber (PI 183967)cpiwmB129
Cla020681Cucsa.123710Cucumber (Gy14) v1cgywmB196
Cla020681Cucsa.232890Cucumber (Gy14) v1cgywmB434
Cla020681CmaCh09G002210Cucurbita maxima (Rimu)cmawmB026
Cla020681CmaCh12G005450Cucurbita maxima (Rimu)cmawmB159
Cla020681CmoCh05G001880Cucurbita moschata (Rifu)cmowmB753
Cla020681CmoCh01G019050Cucurbita moschata (Rifu)cmowmB434
Cla020681CmoCh12G004910Cucurbita moschata (Rifu)cmowmB145
Cla020681CmoCh09G002140Cucurbita moschata (Rifu)cmowmB018
Cla020681Lsi04G015700Bottle gourd (USVL1VR-Ls)lsiwmB316
Cla020681Lsi08G014610Bottle gourd (USVL1VR-Ls)lsiwmB480
Cla020681Cp4.1LG07g05220Cucurbita pepo (Zucchini)cpewmB795
Cla020681Cp4.1LG02g07030Cucurbita pepo (Zucchini)cpewmB559
Cla020681Cp4.1LG06g01580Cucurbita pepo (Zucchini)cpewmB765
Cla020681CsGy4G022320Cucumber (Gy14) v2cgybwmB295
Cla020681CsGy2G019070Cucumber (Gy14) v2cgybwmB119
Cla020681MELO3C010874.2Melon (DHL92) v3.6.1medwmB311
Cla020681MELO3C016746.2Melon (DHL92) v3.6.1medwmB512
Cla020681CsaV3_2G027950Cucumber (Chinese Long) v3cucwmB138
Cla020681Bhi09G002738Wax gourdwgowmB623
Cla020681Bhi04G000317Wax gourdwgowmB329
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla020681Cla022562Watermelon (97103) v1wmwmB059