Cla020612 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla020612
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35
Location	Chr5 : 28246363 .. 28246766 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCAAACCACCTCCATGTAGAATCAAATGAATGTTTGTTTGCCATACCATCAAACAGGAAGCTGAAAGTATGTACTTGCTTTGTGAAGGCTTCAAATCCTAGCAACCAATATTTTACTTAGAGACAAAGAACATGGTTTCTCCCTAATTGACAACTTTATTACTAATGAGATTGAAATCCGTTTTTGGTTCTCAGCTGCAGGATTACGAACATAGTAACCCGACAAGGAAGAGCATTCGTGTGGGTAACGTAAATCTTTACGACTACAGCCCCATCGATCCAGTTCCAAGCTCAAAGAGATCCATAAAACATGGACCAATAGAACATGGATCTCCTCTTATACCTCATATGCCAAATCCTTCTCCTCCTGATCAACCACAGCCTGGTGGTTTTGTGTAG

mRNA sequence

ATGGCTCCAAACCACCTCCATGTAGAATCAAATGAATGTTTGTTTGCCATACCATCAAACAGGAAGCTGAAACTGCAGGATTACGAACATAGTAACCCGACAAGGAAGAGCATTCGTGTGGGTAACGTAAATCTTTACGACTACAGCCCCATCGATCCAGTTCCAAGCTCAAAGAGATCCATAAAACATGGACCAATAGAACATGGATCTCCTCTTATACCTCATATGCCAAATCCTTCTCCTCCTGATCAACCACAGCCTGGTGGTTTTGTGTAG

Coding sequence (CDS)

ATGGCTCCAAACCACCTCCATGTAGAATCAAATGAATGTTTGTTTGCCATACCATCAAACAGGAAGCTGAAACTGCAGGATTACGAACATAGTAACCCGACAAGGAAGAGCATTCGTGTGGGTAACGTAAATCTTTACGACTACAGCCCCATCGATCCAGTTCCAAGCTCAAAGAGATCCATAAAACATGGACCAATAGAACATGGATCTCCTCTTATACCTCATATGCCAAATCCTTCTCCTCCTGATCAACCACAGCCTGGTGGTTTTGTGTAG

Protein sequence

MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKSIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV

Homology

[Close]

BLAST of Cla020612 vs. TrEMBL
Match: A0A0A0L0G3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642390 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 9.2e-42
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 1


Query: 1   MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKSIRVGNVNLYDYSPIDPVPSSKRS 60
           MAPNHLHVESNE LFA PSNRK+KLQD E SNPTRK++RVG+VNLYDY PIDPVPSSKRS
Sbjct: 28  MAPNHLHVESNEYLFATPSNRKMKLQDREQSNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 87

Query: 61  IKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV 92
           IKHGPIEHGSPLIPHMP+PSPPDQPQPGGFV
Sbjct: 88  IKHGPIEHGSPLIPHMPSPSPPDQPQPGGFV 118

[Close]

BLAST of Cla020612 vs. TrEMBL
Match: A0A0A0L2J3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642400 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.6e-23
Identity = 55/90 (61.11%), Postives = 65/90 (72.22%), Query Frame = 1


Query: 1   MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKSIRVGNVNLYDYSPIDPVPSSKRS 60
           +A NH HV +N+CL  I  NRKLK Q  EH N  RK +   ++NL DY PIDPVPSSK S
Sbjct: 34  IALNHHHVNANKCLSDILLNRKLKFQTDEHCNHGRKKVHPDDLNLDDYHPIDPVPSSKTS 93

Query: 61  IKHGPIEHGSPLIPHMPNPSPPDQPQPGGF 91
           +K GPIEHG+PL+PHMPNP PP   QPGG+
Sbjct: 94  VKPGPIEHGAPLLPHMPNPPPPS--QPGGY 121

[Close]

BLAST of Cla020612 vs. TrEMBL
Match: E0CP39_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g09270 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-20
Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = 1


Query: 19  SNRKLKLQDYEHSNPTRKSIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPN 78
           ++RKLK+  YEH+  T K I  GNVNL DY PIDPVPSSK SIK GPI+HG+PLIP++P 
Sbjct: 45  TSRKLKVNGYEHNLGTDKKIIAGNVNLEDYHPIDPVPSSKASIKPGPIQHGTPLIPYIPK 104

Query: 79  PSPPDQPQPGGF 91
           PSPP  P+PGGF
Sbjct: 105 PSPPGHPKPGGF 116

[Close]

BLAST of Cla020612 vs. TrEMBL
Match: W9S263_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010274 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.3e-15
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 1


Query: 7  HVESNECLFAIPSNRKLKLQDYEHSNPTRKSIRVGNVNLYDYSPIDPVPSSKRSIKHGPI 66
          H +    L AI   RKLK   Y+ +    K    GNVNL DY PIDPVPSSK S+K GPI
Sbjct: 19 HHDDGSTLIAI--TRKLKETSYKTNRKENKR-GFGNVNLEDYHPIDPVPSSKASVKPGPI 78

Query: 67 EHGSPLIPHMPNPSPPDQPQ 87
          EHG+P+IP++P PSPPDQP+
Sbjct: 79 EHGAPIIPYIPKPSPPDQPK 95

[Close]

BLAST of Cla020612 vs. TrEMBL
Match: A0A0D2TAF8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G218500 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.6e-15
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 1


Query: 19 SNRKLKLQDYEHSNPTRKSIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPN 78
          ++RKLK   Y  SN  R      NV++ DY PIDPVPSSK SIK GPIEHG+PLIP++P 
Sbjct: 14 TSRKLKGSGYSPSNEKRS-----NVDVDDYDPIDPVPSSKASIKPGPIEHGTPLIPYIPK 73

Query: 79 PSPPDQPQPGG 90
          PSPPD P+ GG
Sbjct: 74 PSPPDHPKIGG 79

[Close]

BLAST of Cla020612 vs. NCBI nr
Match: gi|778696382|ref|XP_011654146.1| (PREDICTED: uncharacterized protein LOC105435308 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 1.3e-41
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 1


Query: 1   MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKSIRVGNVNLYDYSPIDPVPSSKRS 60
           MAPNHLHVESNE LFA PSNRK+KLQD E SNPTRK++RVG+VNLYDY PIDPVPSSKRS
Sbjct: 28  MAPNHLHVESNEYLFATPSNRKMKLQDREQSNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 87

Query: 61  IKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV 92
           IKHGPIEHGSPLIPHMP+PSPPDQPQPGGFV
Sbjct: 88  IKHGPIEHGSPLIPHMPSPSPPDQPQPGGFV 118

[Close]

BLAST of Cla020612 vs. NCBI nr
Match: gi|659103505|ref|XP_008452635.1| (PREDICTED: uncharacterized protein LOC103493594 isoform X2 [Cucumis melo])

HSP 1 Score: 171.4 bits (433), Expect = 7.3e-40
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 1


Query: 1  MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKSIRVGNVNLYDYSPIDPVPSSKRS 60
          MA N+LHVESNE LFA PSNRK+KLQD E  NPTRK++RVG+VNLYDY PIDPVPSSKRS
Sbjct: 1  MAANNLHVESNEYLFATPSNRKMKLQDSEQRNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 60

Query: 61 IKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV 92
          IKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV
Sbjct: 61 IKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV 91

[Close]

BLAST of Cla020612 vs. NCBI nr
Match: gi|659103503|ref|XP_008452634.1| (PREDICTED: uncharacterized protein LOC103493594 isoform X1 [Cucumis melo])

HSP 1 Score: 171.4 bits (433), Expect = 7.3e-40
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 1


Query: 1   MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKSIRVGNVNLYDYSPIDPVPSSKRS 60
           MA N+LHVESNE LFA PSNRK+KLQD E  NPTRK++RVG+VNLYDY PIDPVPSSKRS
Sbjct: 28  MAANNLHVESNEYLFATPSNRKMKLQDSEQRNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 87

Query: 61  IKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV 92
           IKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV
Sbjct: 88  IKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV 118

[Close]

BLAST of Cla020612 vs. NCBI nr
Match: gi|778696384|ref|XP_011654147.1| (PREDICTED: uncharacterized protein LOC105435309 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 8.1e-23
Identity = 55/90 (61.11%), Postives = 65/90 (72.22%), Query Frame = 1


Query: 1   MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKSIRVGNVNLYDYSPIDPVPSSKRS 60
           +A NH HV +N+CL  I  NRKLK Q  EH N  RK +   ++NL DY PIDPVPSSK S
Sbjct: 34  IALNHHHVNANKCLSDILLNRKLKFQTDEHCNHGRKKVHPDDLNLDDYHPIDPVPSSKTS 93

Query: 61  IKHGPIEHGSPLIPHMPNPSPPDQPQPGGF 91
           +K GPIEHG+PL+PHMPNP PP   QPGG+
Sbjct: 94  VKPGPIEHGAPLLPHMPNPPPPS--QPGGY 121

[Close]

BLAST of Cla020612 vs. NCBI nr
Match: gi|659103507|ref|XP_008452636.1| (PREDICTED: uncharacterized protein LOC103493595 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 54/90 (60.00%), Postives = 66/90 (73.33%), Query Frame = 1


Query: 1   MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKSIRVGNVNLYDYSPIDPVPSSKRS 60
           +A N  HV + +CL  +P NRKLK Q  EHSN  RK +  G++NL DY PIDPVPSSK S
Sbjct: 34  IALNQHHVNAKKCLSDMPLNRKLKFQTDEHSNLGRKKVHPGDLNLDDYHPIDPVPSSKTS 93

Query: 61  IKHGPIEHGSPLIPHMPNPSPPDQPQPGGF 91
           +K GPIEH +PL+PHMPNP PP+  QPGG+
Sbjct: 94  VKPGPIEHSAPLLPHMPNPPPPN--QPGGY 121

The following BLAST results are available for this feature:

BLAST of Cla020612 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0G3_CUCSA	9.2e-42	89.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642390 PE=4 SV=1	[more]
A0A0A0L2J3_CUCSA	5.6e-23	61.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642400 PE=4 SV=1	[more]
E0CP39_VITVI	2.6e-20	66.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g09270 PE=4 SV=...	[more]
W9S263_9ROSA	4.3e-15	56.25	Uncharacterized protein OS=Morus notabilis GN=L484_010274 PE=4 SV=1	[more]
A0A0D2TAF8_GOSRA	9.6e-15	60.56	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G218500 PE=4 SV=1	[more]

BLAST of Cla020612 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778696382\|ref\|XP_011654146.1\|	1.3e-41	89.01	PREDICTED: uncharacterized protein LOC105435308 [Cucumis sativus]	[more]
gi\|659103505\|ref\|XP_008452635.1\|	7.3e-40	86.81	PREDICTED: uncharacterized protein LOC103493594 isoform X2 [Cucumis melo]	[more]
gi\|659103503\|ref\|XP_008452634.1\|	7.3e-40	86.81	PREDICTED: uncharacterized protein LOC103493594 isoform X1 [Cucumis melo]	[more]
gi\|778696384\|ref\|XP_011654147.1\|	8.1e-23	61.11	PREDICTED: uncharacterized protein LOC105435309 [Cucumis sativus]	[more]
gi\|659103507\|ref\|XP_008452636.1\|	1.1e-22	60.00	PREDICTED: uncharacterized protein LOC103493595 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0016972	thiol oxidase activity
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla020612	Cla020612.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37249	FAMILY NOT NAMED	coord: 16..90 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla020612	Csa4G642390	Cucumber (Chinese Long) v2	cuwmB319
Cla020612	MELO3C016806	Melon (DHL92) v3.5.1	mewmB527
Cla020612	ClCG05G020460	Watermelon (Charleston Gray)	wcgwmB285
Cla020612	CSPI04G24680	Wild cucumber (PI 183967)	cpiwmB324
Cla020612	Cucsa.352710	Cucumber (Gy14) v1	cgywmB631
Cla020612	CmaCh01G017940	Cucurbita maxima (Rimu)	cmawmB440
Cla020612	CmoCh01G018540	Cucurbita moschata (Rifu)	cmowmB434
Cla020612	CmoCh09G002730	Cucurbita moschata (Rifu)	cmowmB018
Cla020612	Lsi04G014960	Bottle gourd (USVL1VR-Ls)	lsiwmB316
Cla020612	Cp4.1LG02g06690	Cucurbita pepo (Zucchini)	cpewmB559
Cla020612	Cp4.1LG06g01850	Cucurbita pepo (Zucchini)	cpewmB765
Cla020612	CsGy4G022930	Cucumber (Gy14) v2	cgybwmB295
Cla020612	MELO3C032376.2	Melon (DHL92) v3.6.1	medwmB512
Cla020612	Carg21786	Silver-seed gourd	carwmB0313
Cla020612	Carg10635	Silver-seed gourd	carwmB0769
Cla020612	CsaV3_4G034910	Cucumber (Chinese Long) v3	cucwmB332
Cla020612	Bhi09G002674	Wax gourd	wgowmB623

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla020612	Cucumber (Gy14) v2	cgybwmB119
Cla020612	Cucumber (Gy14) v2	cgybwmB554
Cla020612	Melon (DHL92) v3.6.1	medwmB227
Cla020612	Melon (DHL92) v3.6.1	medwmB311
Cla020612	Silver-seed gourd	carwmB0173
Cla020612	Silver-seed gourd	carwmB0404
Cla020612	Cucumber (Chinese Long) v3	cucwmB138
Cla020612	Cucumber (Chinese Long) v3	cucwmB619
Cla020612	Watermelon (97103) v2	wmwmbB207
Cla020612	Watermelon (97103) v2	wmwmbB222
Cla020612	Wax gourd	wgowmB329
Cla020612	Watermelon (97103) v1	wmwmB059
Cla020612	Cucumber (Gy14) v1	cgywmB424
Cla020612	Cucumber (Gy14) v1	cgywmB709
Cla020612	Cucurbita maxima (Rimu)	cmawmB026
Cla020612	Cucurbita maxima (Rimu)	cmawmB115
Cla020612	Cucurbita maxima (Rimu)	cmawmB159
Cla020612	Cucurbita maxima (Rimu)	cmawmB627
Cla020612	Cucurbita maxima (Rimu)	cmawmB758
Cla020612	Cucurbita maxima (Rimu)	cmawmB823
Cla020612	Cucurbita moschata (Rifu)	cmowmB145
Cla020612	Cucurbita moschata (Rifu)	cmowmB618
Cla020612	Cucurbita moschata (Rifu)	cmowmB753
Cla020612	Cucurbita moschata (Rifu)	cmowmB813
Cla020612	Melon (DHL92) v3.5.1	mewmB232
Cla020612	Melon (DHL92) v3.5.1	mewmB317
Cla020612	Watermelon (Charleston Gray)	wcgwmB412
Cla020612	Cucumber (Chinese Long) v2	cuwmB126
Cla020612	Cucumber (Chinese Long) v2	cuwmB591
Cla020612	Cucurbita pepo (Zucchini)	cpewmB108
Cla020612	Cucurbita pepo (Zucchini)	cpewmB480
Cla020612	Cucurbita pepo (Zucchini)	cpewmB797
Cla020612	Bottle gourd (USVL1VR-Ls)	lsiwmB256
Cla020612	Bottle gourd (USVL1VR-Ls)	lsiwmB480