Cla020161 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla020161
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Nucleotide binding protein (AHRD V1 **** B6SXX6_MAIZE); contains Interpro domain(s) IPR019781 WD40 repeat, subgroup
Location	Chr2 : 22984025 .. 22984315 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATTTGCGTCTGGCAGAGAACAGCGGCGGAACATGCTTGCTTGTCGGTGTTGACGGGCCACACCGGCCCGGTGAAGTGCTTGGCCGTCGAGAGAGACAGTGAAGCCAGCGAAGGTGAGCGGCGGTGGATTGTGTATAGTGGGAGTTTGGATAAGTCGGTCAAGATGTGGAGGGTGTCGGAACAGCCGCCGGCGTCCCTTCAAACTCCGCCGTCTTTCTCGCAGGGATCCTCCCCAACCGCCGGCCTCTTGGTAAATGCTCCCAGTTTCGTTATTCGAGAACAGTAA

mRNA sequence

ATGGGGATTTGCGTCTGGCAGAGAACAGCGGCGGAACATGCTTGCTTGTCGGTGTTGACGGGCCACACCGGCCCGGTGAAGTGCTTGGCCGTCGAGAGAGACAGTGAAGCCAGCGAAGGTGAGCGGCGGTGGATTGTGTATAGTGGGAGTTTGGATAAGTCGGTCAAGATGTGGAGGGTGTCGGAACAGCCGCCGGCGTCCCTTCAAACTCCGCCGTCTTTCTCGCAGGGATCCTCCCCAACCGCCGGCCTCTTGGTAAATGCTCCCAGTTTCGTTATTCGAGAACAGTAA

Coding sequence (CDS)

ATGGGGATTTGCGTCTGGCAGAGAACAGCGGCGGAACATGCTTGCTTGTCGGTGTTGACGGGCCACACCGGCCCGGTGAAGTGCTTGGCCGTCGAGAGAGACAGTGAAGCCAGCGAAGGTGAGCGGCGGTGGATTGTGTATAGTGGGAGTTTGGATAAGTCGGTCAAGATGTGGAGGGTGTCGGAACAGCCGCCGGCGTCCCTTCAAACTCCGCCGTCTTTCTCGCAGGGATCCTCCCCAACCGCCGGCCTCTTGGTAAATGCTCCCAGTTTCGTTATTCGAGAACAGTAA

Protein sequence

MGICVWQRTAAEHACLSVLTGHTGPVKCLAVERDSEASEGERRWIVYSGSLDKSVKMWRVSEQPPASLQTPPSFSQGSSPTAGLLVNAPSFVIREQ

Homology

[Close]

BLAST of Cla020161 vs. TrEMBL
Match: A0A0A0LQ12_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G292220 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.6e-39
Identity = 80/96 (83.33%), Postives = 86/96 (89.58%), Query Frame = 1


Query: 1   MGICVWQRTAAEHACLSVLTGHTGPVKCLAVERDSEASEGERRWIVYSGSLDKSVKMWRV 60
           MGICVWQR A++H CLSVLTGHTGPVKCLAVE+D+E SEGERRWIVYSGSLDKSVKMWRV
Sbjct: 376 MGICVWQRIASDHFCLSVLTGHTGPVKCLAVEKDNEVSEGERRWIVYSGSLDKSVKMWRV 435

Query: 61  SEQPPASLQTPPSFSQGSSPTAGLLVNAPSFVIREQ 97
           SEQPP++ Q  PSF    SPTAGLLVNAPSFVIREQ
Sbjct: 436 SEQPPSTFQRSPSFIPECSPTAGLLVNAPSFVIREQ 471

[Close]

BLAST of Cla020161 vs. TrEMBL
Match: A0A061DGN7_THECC (Transducin/WD40 repeat-like superfamily protein, putative OS=Theobroma cacao GN=TCM_000509 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 9.1e-24
Identity = 55/92 (59.78%), Postives = 69/92 (75.00%), Query Frame = 1


Query: 1   MGICVWQRTAAEHACLSVLTGHTGPVKCLAVERDSEASEGERRWIVYSGSLDKSVKMWRV 60
           MGI VW+R+ +EH CLS+LTGH+GPVKCLA+ERD E++ GE+RWI+YSGSLDKSVKMWR+
Sbjct: 457 MGISVWKRSGSEHLCLSMLTGHSGPVKCLAIERDHESASGEKRWILYSGSLDKSVKMWRI 516

Query: 61  SEQPPASLQTP-PSFSQGSSPTAGLLVNAPSF 92
           SE+ P  +Q     +S  S      L  APSF
Sbjct: 517 SERAPPMMQNQHQPYSSDSKRVPTSLTVAPSF 548

[Close]

BLAST of Cla020161 vs. TrEMBL
Match: B9S8Q4_RICCO (F-box and wd40 domain protein, putative OS=Ricinus communis GN=RCOM_0603620 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-22
Identity = 57/92 (61.96%), Postives = 65/92 (70.65%), Query Frame = 1


Query: 1   MGICVWQRTAAEHACLSVLTGHTGPVKCLAVERDSEASEGERRWIVYSGSLDKSVKMWRV 60
           MGICVW+R  A+H CLS+LTGHTGPVKCLA E+D E + GE RWI+YSGSLDKSVKMWRV
Sbjct: 365 MGICVWRRLGADHICLSLLTGHTGPVKCLATEKDQELTSGEARWILYSGSLDKSVKMWRV 424

Query: 61  SEQ-PPASLQ--------TPPSFSQGSSPTAG 84
           SE  PP +          + PS S GSS   G
Sbjct: 425 SENTPPVAWNGCASSMPLSLPSSSAGSSDIHG 456

[Close]

BLAST of Cla020161 vs. TrEMBL
Match: V4SPJ6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027384mg PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.9e-22
Identity = 56/94 (59.57%), Postives = 68/94 (72.34%), Query Frame = 1


Query: 1   MGICVWQRTAAEHACLSVLTGHTGPVKCLAVERDSEASEGERRWIVYSGSLDKSVKMWRV 60
           M IC+W+R   EH CLS+LTGH+GPVKCLAVE+D E+   E+RWI+YSGSLDKSVKMWRV
Sbjct: 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431

Query: 61  SEQPP---ASLQTPPSFSQGSSPTAGLLVNAPSF 92
           SEQ P   ++ Q  P    G +P +  L  APSF
Sbjct: 432 SEQAPPLVSTTQQHPLEGHGVAPNS--LPYAPSF 463

[Close]

BLAST of Cla020161 vs. TrEMBL
Match: A0A067GVP2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047728mg PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.9e-22
Identity = 56/94 (59.57%), Postives = 68/94 (72.34%), Query Frame = 1


Query: 1   MGICVWQRTAAEHACLSVLTGHTGPVKCLAVERDSEASEGERRWIVYSGSLDKSVKMWRV 60
           M IC+W+R   EH CLS+LTGH+GPVKCLAVE+D E+   E+RWI+YSGSLDKSVKMWRV
Sbjct: 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431

Query: 61  SEQPP---ASLQTPPSFSQGSSPTAGLLVNAPSF 92
           SEQ P   ++ Q  P    G +P +  L  APSF
Sbjct: 432 SEQAPPLVSTTQQHPLEGHGVAPNS--LPYAPSF 463

[Close]

BLAST of Cla020161 vs. NCBI nr
Match: gi|700206922|gb|KGN62041.1| (hypothetical protein Csa_2G292220 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 3.8e-39
Identity = 80/96 (83.33%), Postives = 86/96 (89.58%), Query Frame = 1


Query: 1   MGICVWQRTAAEHACLSVLTGHTGPVKCLAVERDSEASEGERRWIVYSGSLDKSVKMWRV 60
           MGICVWQR A++H CLSVLTGHTGPVKCLAVE+D+E SEGERRWIVYSGSLDKSVKMWRV
Sbjct: 376 MGICVWQRIASDHFCLSVLTGHTGPVKCLAVEKDNEVSEGERRWIVYSGSLDKSVKMWRV 435

Query: 61  SEQPPASLQTPPSFSQGSSPTAGLLVNAPSFVIREQ 97
           SEQPP++ Q  PSF    SPTAGLLVNAPSFVIREQ
Sbjct: 436 SEQPPSTFQRSPSFIPECSPTAGLLVNAPSFVIREQ 471

[Close]

BLAST of Cla020161 vs. NCBI nr
Match: gi|659116196|ref|XP_008457956.1| (PREDICTED: WD repeat-containing protein 5-like [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-35
Identity = 74/87 (85.06%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 1   MGICVWQRTAAEHACLSVLTGHTGPVKCLAVERDSEASEGERRWIVYSGSLDKSVKMWRV 60
           MGICVWQRTAAEH CLSVLTGHTGPVKCLAVE+DSEA EGERRWIVYSGSLDKSVKMWRV
Sbjct: 317 MGICVWQRTAAEHICLSVLTGHTGPVKCLAVEKDSEAGEGERRWIVYSGSLDKSVKMWRV 376

Query: 61  SEQPPASLQTPPSFSQGSSPTAGLLVN 88
           SEQPPA+ Q  PSF    SPTAGLL++
Sbjct: 377 SEQPPAAFQKQPSFMPECSPTAGLLLS 403

[Close]

BLAST of Cla020161 vs. NCBI nr
Match: gi|778674206|ref|XP_004148066.2| (PREDICTED: WD repeat-containing protein 5B [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 4.1e-33
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 1


Query: 1   MGICVWQRTAAEHACLSVLTGHTGPVKCLAVERDSEASEGERRWIVYSGSLDKSVKMWRV 60
           MGICVWQR A++H CLSVLTGHTGPVKCLAVE+D+E SEGERRWIVYSGSLDKSVKMWRV
Sbjct: 317 MGICVWQRIASDHFCLSVLTGHTGPVKCLAVEKDNEVSEGERRWIVYSGSLDKSVKMWRV 376

Query: 61  SEQPPASLQTPPSFSQGSSPTAGLLVN 88
           SEQPP++ Q  PSF    SPTAGLL++
Sbjct: 377 SEQPPSTFQRSPSFIPECSPTAGLLLS 403

[Close]

BLAST of Cla020161 vs. NCBI nr
Match: gi|590704244|ref|XP_007047105.1| (Transducin/WD40 repeat-like superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-23
Identity = 55/92 (59.78%), Postives = 69/92 (75.00%), Query Frame = 1


Query: 1   MGICVWQRTAAEHACLSVLTGHTGPVKCLAVERDSEASEGERRWIVYSGSLDKSVKMWRV 60
           MGI VW+R+ +EH CLS+LTGH+GPVKCLA+ERD E++ GE+RWI+YSGSLDKSVKMWR+
Sbjct: 457 MGISVWKRSGSEHLCLSMLTGHSGPVKCLAIERDHESASGEKRWILYSGSLDKSVKMWRI 516

Query: 61  SEQPPASLQTP-PSFSQGSSPTAGLLVNAPSF 92
           SE+ P  +Q     +S  S      L  APSF
Sbjct: 517 SERAPPMMQNQHQPYSSDSKRVPTSLTVAPSF 548

[Close]

BLAST of Cla020161 vs. NCBI nr
Match: gi|764593143|ref|XP_004300569.2| (PREDICTED: protein will die slowly-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 115.5 bits (288), Expect = 5.0e-23
Identity = 58/95 (61.05%), Postives = 65/95 (68.42%), Query Frame = 1


Query: 1   MGICVWQRTAAEHACLSVLTGHTGPVKCLAVERDSEASEGERRWIVYSGSLDKSVKMWRV 60
           MGICVW+R+  +H CLSVLTGHTGPVKCLAVE+D E +  E RWIVYSGSLDKSVKMWRV
Sbjct: 354 MGICVWRRSEGDHICLSVLTGHTGPVKCLAVEKDHEDTPAETRWIVYSGSLDKSVKMWRV 413

Query: 61  SEQ-PPASLQTPPSFSQGSSPTAGLLVNAPSFVIR 95
           SEQ PP                  +L +APSF  R
Sbjct: 414 SEQAPPMVPNQKHQHYTSDGYCVPMLSSAPSFASR 448

The following BLAST results are available for this feature:

BLAST of Cla020161 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ12_CUCSA	2.6e-39	83.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G292220 PE=4 SV=1	[more]
A0A061DGN7_THECC	9.1e-24	59.78	Transducin/WD40 repeat-like superfamily protein, putative OS=Theobroma cacao GN=...	[more]
B9S8Q4_RICCO	1.7e-22	61.96	F-box and wd40 domain protein, putative OS=Ricinus communis GN=RCOM_0603620 PE=4...	[more]
V4SPJ6_9ROSI	2.9e-22	59.57	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027384mg PE=4 SV=1	[more]
A0A067GVP2_CITSI	2.9e-22	59.57	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047728mg PE=4 SV=1	[more]

BLAST of Cla020161 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206922\|gb\|KGN62041.1\|	3.8e-39	83.33	hypothetical protein Csa_2G292220 [Cucumis sativus]	[more]
gi\|659116196\|ref\|XP_008457956.1\|	2.0e-35	85.06	PREDICTED: WD repeat-containing protein 5-like [Cucumis melo]	[more]
gi\|778674206\|ref\|XP_004148066.2\|	4.1e-33	79.31	PREDICTED: WD repeat-containing protein 5B [Cucumis sativus]	[more]
gi\|590704244\|ref\|XP_007047105.1\|	1.3e-23	59.78	Transducin/WD40 repeat-like superfamily protein, putative [Theobroma cacao]	[more]
gi\|764593143\|ref\|XP_004300569.2\|	5.0e-23	61.05	PREDICTED: protein will die slowly-like [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0016459	myosin complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016905	myosin heavy chain kinase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla020161	Cla020161.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 15..58 score: 8.
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 12..59 score: 1.
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 3..63 score: 4.
IPR017986	WD40-repeat-containing domain	unknown	SSF50978	WD40 repeat-like	coord: 3..62 score: 5.1
None	No IPR available	unknown	Coil	Coil	coord: 93..96 scor
None	No IPR available	PANTHER	PTHR22844	F-BOX AND WD40 DOMAIN PROTEIN	coord: 1..69 score: 1.8
None	No IPR available	PANTHER	PTHR22844:SF211	SUBFAMILY NOT NAMED	coord: 1..69 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla020161	Cla97C02G038760	Watermelon (97103) v2	wmwmbB316
Cla020161	CSPI02G14620	Wild cucumber (PI 183967)	cpiwmB142
Cla020161	Cucsa.366530	Cucumber (Gy14) v1	cgywmB667
Cla020161	CmaCh02G005650	Cucurbita maxima (Rimu)	cmawmB587
Cla020161	CmaCh20G011400	Cucurbita maxima (Rimu)	cmawmB533
Cla020161	CmoCh02G005740	Cucurbita moschata (Rifu)	cmowmB581
Cla020161	CmoCh20G011730	Cucurbita moschata (Rifu)	cmowmB522
Cla020161	CsaV3_2G017170	Cucumber (Chinese Long) v3	cucwmB153
Cla020161	Bhi10G001805	Wax gourd	wgowmB380

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla020161	Melon (DHL92) v3.6.1	medwmB116
Cla020161	Silver-seed gourd	carwmB0993
Cla020161	Silver-seed gourd	carwmB1058
Cla020161	Cucumber (Chinese Long) v3	cucwmB555
Cla020161	Watermelon (97103) v2	wmwmbB308
Cla020161	Wax gourd	wgowmB394
Cla020161	Cucumber (Gy14) v1	cgywmB139
Cla020161	Melon (DHL92) v3.5.1	mewmB120
Cla020161	Melon (DHL92) v3.5.1	mewmB593
Cla020161	Watermelon (Charleston Gray)	wcgwmB165
Cla020161	Watermelon (Charleston Gray)	wcgwmB197
Cla020161	Cucumber (Chinese Long) v2	cuwmB140
Cla020161	Cucumber (Chinese Long) v2	cuwmB525
Cla020161	Cucurbita pepo (Zucchini)	cpewmB290
Cla020161	Cucurbita pepo (Zucchini)	cpewmB749
Cla020161	Bottle gourd (USVL1VR-Ls)	lsiwmB159
Cla020161	Bottle gourd (USVL1VR-Ls)	lsiwmB065
Cla020161	Cucumber (Gy14) v2	cgybwmB495
Cla020161	Cucumber (Gy14) v2	cgybwmB133
Cla020161	Cucumber (Gy14) v2	cgybwmB139