Cla020151 (gene) Watermelon (97103) v1

Overview
NameCla020151
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr2 : 23075630 .. 23075785 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTGGATGGATGCGGGGGGGGGCCGGCCGCTTGAAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGCGGCTAGGTTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTAA

mRNA sequence

ATGCATTGGATGGATGCGGGGGGGGGCCGGCCGCTTGAAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGCGGCTAGGTTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTAA

Coding sequence (CDS)

ATGCATTGGATGGATGCGGGGGGGGGCCGGCCGCTTGAAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGCGGCTAGGTTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTAA

Protein sequence

MHWMDAGGGRPLEEAKGHGEIPSVIHGSPIGKPYPSSAARLRSLDFSNLAN
Homology
[Close]
BLAST of Cla020151 vs. TrEMBL
Match: B9RRJ3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1644140 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.8e-11
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 1 

Query: 12 LEEAKGHGEIPSVIHGSPIGKPYPSSAARLRSLDFSNLAN 52
          L +AKGHGEIPSVIHGSPIGKPYPSS A LRSLDF NLAN
Sbjct: 2  LSKAKGHGEIPSVIHGSPIGKPYPSSVASLRSLDFENLAN 41

[Close]
BLAST of Cla020151 vs. NCBI nr
Match: gi|223544460|gb|EEF45979.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 75.1 bits (183), Expect = 4.0e-11
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 1 

Query: 12 LEEAKGHGEIPSVIHGSPIGKPYPSSAARLRSLDFSNLAN 52
          L +AKGHGEIPSVIHGSPIGKPYPSS A LRSLDF NLAN
Sbjct: 2  LSKAKGHGEIPSVIHGSPIGKPYPSSVASLRSLDFENLAN 41

The following BLAST results are available for this feature:
BLAST of Cla020151 vs. TrEMBL
Match NameE-valueIdentityDescription
B9RRJ3_RICCO2.8e-1187.50Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1644140 PE=4 SV=1[more]
BLAST of Cla020151 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|223544460|gb|EEF45979.1|4.0e-1187.50conserved hypothetical protein [Ricinus communis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU32556watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU52117watermelon EST collection version 2.0transcribed_cluster
WMU53409watermelon EST collection version 2.0transcribed_cluster
WMU66447watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla020151Cla020151.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU32556WMU32556transcribed_cluster
WMU53409WMU53409transcribed_cluster
WMU66447WMU66447transcribed_cluster
WMU52117WMU52117transcribed_cluster