Cla020037 (gene) Watermelon (97103) v1

Overview
NameCla020037
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr2 : 24599701 .. 24599967 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACTGGAACATTTCAATTTGATATGGAATTACTGGGGAATTGAGTTTCTAGTCTTGGCAAACTTCATATTCCAAGTTATCCTAATTTTCTGTGGAAGTCGTAGAAGGCACACACCAGGATATAAGCTTAGTTTATCTGTTTGGGTTTCCTACATACTTGTTGCTAGAATTGCAACTGTTGTTCTAGGCAAGCTCACGACAATCGACACAGGTGATCAACAGCGCAACACACACAGCCAAGTTGAGGCATTGTTGGCACCATAG

mRNA sequence

ATGGTACTGGAACATTTCAATTTGATATGGAATTACTGGGGAATTGAGTTTCTAGTCTTGGCAAACTTCATATTCCAAGTTATCCTAATTTTCTGTGGAAGTCGTAGAAGGCACACACCAGGATATAAGCTTAGTTTATCTGTTTGGGTTTCCTACATACTTGTTGCTAGAATTGCAACTGTTGTTCTAGGCAAGCTCACGACAATCGACACAGGTGATCAACAGCGCAACACACACAGCCAAGTTGAGGCATTGTTGGCACCATAG

Coding sequence (CDS)

ATGGTACTGGAACATTTCAATTTGATATGGAATTACTGGGGAATTGAGTTTCTAGTCTTGGCAAACTTCATATTCCAAGTTATCCTAATTTTCTGTGGAAGTCGTAGAAGGCACACACCAGGATATAAGCTTAGTTTATCTGTTTGGGTTTCCTACATACTTGTTGCTAGAATTGCAACTGTTGTTCTAGGCAAGCTCACGACAATCGACACAGGTGATCAACAGCGCAACACACACAGCCAAGTTGAGGCATTGTTGGCACCATAG

Protein sequence

MVLEHFNLIWNYWGIEFLVLANFIFQVILIFCGSRRRHTPGYKLSLSVWVSYILVARIATVVLGKLTTIDTGDQQRNTHSQVEALLAP
Homology
[Close]
BLAST of Cla020037 vs. TrEMBL
Match: A0A0A0LK45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G036650 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.5e-30
Identity = 66/88 (75.00%), Postives = 75/88 (85.23%), Query Frame = 1 

Query: 1  MVLEHFNLIWNYWGIEFLVLANFIFQVILIFCGSRRRHTPGYKLSLSVWVSYILVARIAT 60
          +V EH + IW YWGIE LVLANF+FQVIL F GSRRRHTPG +LSL VW SY+L A+IAT
Sbjct: 9  IVPEHISFIWGYWGIELLVLANFVFQVILTFNGSRRRHTPGNRLSLIVWFSYLLAAKIAT 68

Query: 61 VVLGKLTTIDTGDQQRNTHSQVEALLAP 89
          VVLGKLTTID G +QRNTH+QV+ALLAP
Sbjct: 69 VVLGKLTTIDIGHEQRNTHTQVQALLAP 96

[Close]
BLAST of Cla020037 vs. TrEMBL
Match: A2Q356_MEDTR (DUF594 family protein OS=Medicago truncatula GN=MTR_2g048300 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.6e-12
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 1 

Query: 9  IWNYWGIEFLVLANFIFQVILIFCGSRRRHTPGYKLSLSVWVSYILVARIATVVLGKLTT 68
          +W+ WG+E L+L +F  QVIL   GSRR+  PG  + L+VW +Y+L A +A +++GKLT 
Sbjct: 13 LWDLWGLEILMLMSFTIQVILTVYGSRRKDIPGMGIRLTVWFTYLLSASLAKIIIGKLTI 72

Query: 69 IDTGD-QQRNTHSQVEALLAP 89
          I   D  +RN   +++AL AP
Sbjct: 73 IPESDPDERNIRRELKALFAP 93

[Close]
BLAST of Cla020037 vs. TrEMBL
Match: A0A0S3RH49_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G278600 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-11
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 1 

Query: 9  IWNYWGIEFLVLANFIFQVILIFCGSRRRHTPGYKLSLSVWVSYILVARIATVVLGKLTT 68
          +W+ WG+E LVL +F  QVIL   GSRR+  PG +   +VW +Y+L A +  +++GKLT 
Sbjct: 13 LWDNWGLEMLVLLSFTIQVILTVYGSRRKDIPGLRTRFTVWFTYLLSASLQKIIIGKLTV 72

Query: 69 IDTGD-QQRNTHSQVEALLAP 89
          I   D  +RN   +++AL AP
Sbjct: 73 IPESDPSERNIRRELKALFAP 93

[Close]
BLAST of Cla020037 vs. TrEMBL
Match: A0A0L9UBV4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g021500 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-11
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 1 

Query: 9  IWNYWGIEFLVLANFIFQVILIFCGSRRRHTPGYKLSLSVWVSYILVARIATVVLGKLTT 68
          +W+ WG+E LVL +F  QVIL   GSRR+  PG +   +VW +Y+L A +  +++GKLT 
Sbjct: 13 LWDNWGLEMLVLLSFTIQVILTVYGSRRKDIPGLRTRFTVWFTYLLSASLQKIIIGKLTV 72

Query: 69 IDTGD-QQRNTHSQVEALLAP 89
          I   D  +RN   +++AL AP
Sbjct: 73 IPESDPSERNIRRELKALFAP 93

[Close]
BLAST of Cla020037 vs. TrEMBL
Match: V7B0K1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G206400g PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-11
Identity = 34/81 (41.98%), Postives = 53/81 (65.43%), Query Frame = 1 

Query: 9  IWNYWGIEFLVLANFIFQVILIFCGSRRRHTPGYKLSLSVWVSYILVARIATVVLGKLTT 68
          +W+ WG+E L+L +F  QVIL   GSRR+  PG ++  +VW +Y+L A +  +++GKLT 
Sbjct: 13 LWDNWGLEMLMLLSFTIQVILTVYGSRRKDIPGMRIRFTVWFTYLLSASLQKIIIGKLTV 72

Query: 69 IDTGD-QQRNTHSQVEALLAP 89
          I   D  +RN   +++AL AP
Sbjct: 73 IPESDPNERNIRRELKALFAP 93

[Close]
BLAST of Cla020037 vs. NCBI nr
Match: gi|449454093|ref|XP_004144790.1| (PREDICTED: uncharacterized protein LOC101214084 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 5.0e-30
Identity = 66/88 (75.00%), Postives = 75/88 (85.23%), Query Frame = 1 

Query: 1  MVLEHFNLIWNYWGIEFLVLANFIFQVILIFCGSRRRHTPGYKLSLSVWVSYILVARIAT 60
          +V EH + IW YWGIE LVLANF+FQVIL F GSRRRHTPG +LSL VW SY+L A+IAT
Sbjct: 9  IVPEHISFIWGYWGIELLVLANFVFQVILTFNGSRRRHTPGNRLSLIVWFSYLLAAKIAT 68

Query: 61 VVLGKLTTIDTGDQQRNTHSQVEALLAP 89
          VVLGKLTTID G +QRNTH+QV+ALLAP
Sbjct: 69 VVLGKLTTIDIGHEQRNTHTQVQALLAP 96

[Close]
BLAST of Cla020037 vs. NCBI nr
Match: gi|659069933|ref|XP_008452495.1| (PREDICTED: uncharacterized protein LOC103493508 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 6.6e-30
Identity = 66/88 (75.00%), Postives = 75/88 (85.23%), Query Frame = 1 

Query: 1  MVLEHFNLIWNYWGIEFLVLANFIFQVILIFCGSRRRHTPGYKLSLSVWVSYILVARIAT 60
          +V EH + IW YWGIE LVLANF+FQVIL F GSRRRHTPG +LSL VW SY+L A+IAT
Sbjct: 9  IVPEHISFIWGYWGIELLVLANFVFQVILTFNGSRRRHTPGNRLSLIVWFSYLLAAKIAT 68

Query: 61 VVLGKLTTIDTGDQQRNTHSQVEALLAP 89
          VVLGKLTTID G +QRNTH+QV+ALLAP
Sbjct: 69 VVLGKLTTIDIGREQRNTHTQVQALLAP 96

[Close]
BLAST of Cla020037 vs. NCBI nr
Match: gi|357450423|ref|XP_003595488.1| (DUF594 family protein [Medicago truncatula])

HSP 1 Score: 78.2 bits (191), Expect = 8.1e-12
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 1 

Query: 9  IWNYWGIEFLVLANFIFQVILIFCGSRRRHTPGYKLSLSVWVSYILVARIATVVLGKLTT 68
          +W+ WG+E L+L +F  QVIL   GSRR+  PG  + L+VW +Y+L A +A +++GKLT 
Sbjct: 13 LWDLWGLEILMLMSFTIQVILTVYGSRRKDIPGMGIRLTVWFTYLLSASLAKIIIGKLTI 72

Query: 69 IDTGD-QQRNTHSQVEALLAP 89
          I   D  +RN   +++AL AP
Sbjct: 73 IPESDPDERNIRRELKALFAP 93

[Close]
BLAST of Cla020037 vs. NCBI nr
Match: gi|502167467|ref|XP_004514149.1| (PREDICTED: uncharacterized protein LOC101506604 [Cicer arietinum])

HSP 1 Score: 78.2 bits (191), Expect = 8.1e-12
Identity = 35/81 (43.21%), Postives = 55/81 (67.90%), Query Frame = 1 

Query: 9  IWNYWGIEFLVLANFIFQVILIFCGSRRRHTPGYKLSLSVWVSYILVARIATVVLGKLTT 68
          +W+ WG+E L+L +F  QVIL   GSRR+  PG  + L++W++Y+L A +A +++GKLT 
Sbjct: 13 LWDLWGLEILMLLSFSIQVILTVYGSRRKDIPGIWIRLTIWLTYLLSASLAKIIIGKLTV 72

Query: 69 IDTGD-QQRNTHSQVEALLAP 89
          I   D  +RN   +++AL AP
Sbjct: 73 IPESDPNERNIRRELKALFAP 93

[Close]
BLAST of Cla020037 vs. NCBI nr
Match: gi|593329965|ref|XP_007138409.1| (hypothetical protein PHAVU_009G206400g [Phaseolus vulgaris])

HSP 1 Score: 76.3 bits (186), Expect = 3.1e-11
Identity = 34/81 (41.98%), Postives = 53/81 (65.43%), Query Frame = 1 

Query: 9  IWNYWGIEFLVLANFIFQVILIFCGSRRRHTPGYKLSLSVWVSYILVARIATVVLGKLTT 68
          +W+ WG+E L+L +F  QVIL   GSRR+  PG ++  +VW +Y+L A +  +++GKLT 
Sbjct: 13 LWDNWGLEMLMLLSFTIQVILTVYGSRRKDIPGMRIRFTVWFTYLLSASLQKIIIGKLTV 72

Query: 69 IDTGD-QQRNTHSQVEALLAP 89
          I   D  +RN   +++AL AP
Sbjct: 73 IPESDPNERNIRRELKALFAP 93

The following BLAST results are available for this feature:
BLAST of Cla020037 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LK45_CUCSA3.5e-3075.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G036650 PE=4 SV=1[more]
A2Q356_MEDTR5.6e-1244.44DUF594 family protein OS=Medicago truncatula GN=MTR_2g048300 PE=4 SV=1[more]
A0A0S3RH49_PHAAN2.1e-1143.21Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G278600 PE=... [more]
A0A0L9UBV4_PHAAN2.1e-1143.21Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g021500 PE=4 SV=1[more]
V7B0K1_PHAVU2.1e-1141.98Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G206400g PE=4 SV=1[more]
BLAST of Cla020037 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449454093|ref|XP_004144790.1|5.0e-3075.00PREDICTED: uncharacterized protein LOC101214084 [Cucumis sativus][more]
gi|659069933|ref|XP_008452495.1|6.6e-3075.00PREDICTED: uncharacterized protein LOC103493508 [Cucumis melo][more]
gi|357450423|ref|XP_003595488.1|8.1e-1244.44DUF594 family protein [Medicago truncatula][more]
gi|502167467|ref|XP_004514149.1|8.1e-1243.21PREDICTED: uncharacterized protein LOC101506604 [Cicer arietinum][more]
gi|593329965|ref|XP_007138409.1|3.1e-1141.98hypothetical protein PHAVU_009G206400g [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla020037Cla020037.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31325FAMILY NOT NAMEDcoord: 9..88
score: 2.0
NoneNo IPR availablePANTHERPTHR31325:SF0SUBFAMILY NOT NAMEDcoord: 9..88
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla020037Cla97C02G040010Watermelon (97103) v2wmwmbB316
Cla020037ClCG02G014250Watermelon (Charleston Gray)wcgwmB197
Cla020037Cp4.1LG11g08270Cucurbita pepo (Zucchini)cpewmB113
Cla020037Bhi06G001202Wax gourdwgowmB134
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None